Experimental Taxonomy, 1930-1950: the Impact of Cytology
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Phleum Alpinum L
Phleum alpinum L. Alpine Cat’s-tail A scarce alpine grass with distinctive purplish flower heads, long bristly awns and short, broad and glabrous leaves. It is associated with base- rich flushes and mires, more rarely with rocky habitats, and occasionally with weakly acid substrates enriched by flushing with base-rich water. In Britain it is more or less confined to above 610 m northern and central Scotland with two southern outliers in the North Pennines. It is assessed as of Least Concern in Great Britain, but in England it is assessed as Critically Endangered, due to very restricted numbers and recent decline. ©Pete Stroh IDENTIFICATION limit for both these species (540 m) is well below the lower limit for P. alpinum in Britain (610 m). However, P. pratense Phleum alpinum is a shortly rhizomatous, loosely tufted has been recorded as an introduction at 845 m near to the P. perennial alpine grass with short, broad, glabrous leaves (-6 alpinum on Great Dun Fell (Pearman & Corner 2004). mm) and short, blunt ligules (0.5–2 mm; Cope & Gray 2009). The uppermost leaf sheath is inflated. Alopecurus magellanicus, with which it often grows, has hairy, awnless glumes and ‘thunder-cloud’ coloured flower- The inflorescences are dark-blue or brownish purple, oval to heads (red-purple in P. alpinum; Raven & Walters 1956). oblong shaped (10-50 mm). The spikelets are purplish with long awns (2-3 mm) and the keels are fringed with stiff white bristles. HABITATS Phleum alpinum is a montane grass of open, rocky habitats or SIMILAR SPECIES of closed swards on base-rich substrates, or occasionally on more acidic materials enriched by flushing or down-washed Phleum alpinum is told from P. -
The Glycosyltransferase Repertoire of the Spikemoss Selaginella Moellendorffiind a a Comparative Study of Its Cell Wall
Purdue University Purdue e-Pubs Department of Botany and Plant Pathology Faculty Department of Botany and Plant Pathology Publications 5-2-2012 The Glycosyltransferase Repertoire of the Spikemoss Selaginella moellendorffiind a a Comparative Study of Its Cell Wall. Jesper Harholt Iben Sørensen Cornell University Jonatan Fangel Alison Roberts University of Rhode Island William G.T. Willats See next page for additional authors Follow this and additional works at: http://docs.lib.purdue.edu/btnypubs Recommended Citation Harholt, Jesper; Sørensen, Iben; Fangel, Jonatan; Roberts, Alison; Willats, William G.T.; Scheller, Henrik Vibe; Petersen, Bent Larsen; Banks, Jo Ann; and Ulvskov, Peter, "The Glycosyltransferase Repertoire of the Spikemoss Selaginella moellendorffii and a Comparative Study of Its Cell Wall." (2012). Department of Botany and Plant Pathology Faculty Publications. Paper 15. http://dx.doi.org/10.1371/journal.pone.0035846 This document has been made available through Purdue e-Pubs, a service of the Purdue University Libraries. Please contact [email protected] for additional information. Authors Jesper Harholt, Iben Sørensen, Jonatan Fangel, Alison Roberts, William G.T. Willats, Henrik Vibe Scheller, Bent Larsen Petersen, Jo Ann Banks, and Peter Ulvskov This article is available at Purdue e-Pubs: http://docs.lib.purdue.edu/btnypubs/15 The Glycosyltransferase Repertoire of the Spikemoss Selaginella moellendorffii and a Comparative Study of Its Cell Wall Jesper Harholt1, Iben Sørensen1,2, Jonatan Fangel1, Alison Roberts3, William G. -
Synthesis of Phylogeny and Taxonomy Into a Comprehensive Tree of Life
Synthesis of phylogeny and taxonomy into a comprehensive tree of life Cody E. Hinchliffa,1, Stephen A. Smitha,1,2, James F. Allmanb, J. Gordon Burleighc, Ruchi Chaudharyc, Lyndon M. Coghilld, Keith A. Crandalle, Jiabin Dengc, Bryan T. Drewf, Romina Gazisg, Karl Gudeh, David S. Hibbettg, Laura A. Katzi, H. Dail Laughinghouse IVi, Emily Jane McTavishj, Peter E. Midfordd, Christopher L. Owenc, Richard H. Reed, Jonathan A. Reesk, Douglas E. Soltisc,l, Tiffani Williamsm, and Karen A. Cranstonk,2 aEcology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109; bInterrobang Corporation, Wake Forest, NC 27587; cDepartment of Biology, University of Florida, Gainesville, FL 32611; dField Museum of Natural History, Chicago, IL 60605; eComputational Biology Institute, George Washington University, Ashburn, VA 20147; fDepartment of Biology, University of Nebraska-Kearney, Kearney, NE 68849; gDepartment of Biology, Clark University, Worcester, MA 01610; hSchool of Journalism, Michigan State University, East Lansing, MI 48824; iBiological Science, Clark Science Center, Smith College, Northampton, MA 01063; jDepartment of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS 66045; kNational Evolutionary Synthesis Center, Duke University, Durham, NC 27705; lFlorida Museum of Natural History, University of Florida, Gainesville, FL 32611; and mComputer Science and Engineering, Texas A&M University, College Station, TX 77843 Edited by David M. Hillis, The University of Texas at Austin, Austin, TX, and approved July 28, 2015 (received for review December 3, 2014) Reconstructing the phylogenetic relationships that unite all line- published phylogenies are available only as journal figures, rather ages (the tree of life) is a grand challenge. The paucity of homologous than in electronic formats that can be integrated into databases and character data across disparately related lineages currently renders synthesis methods (7–9). -
Principles of Plant Taxonomy Bot
PRINCIPLES OF PLANT TAXONOMY BOT 222 Dr. M. Ajmal Ali, PhD 1 What is Taxonomy / Systematics ? Animal group No. of species Amphibians 6,199 Birds 9,956 Fish 30,000 Mammals 5,416 Tundra Reptiles 8,240 Subtotal 59,811 Grassland Forest Insects 950,000 Molluscs 81,000 Q: Why we keep the stuffs of our home Crustaceans 40,000 at the fixed place or arrange into some Corals 2,175 kinds of system? Desert Others 130,200 Rain forest Total 1,203,375 • Every Human being is a Taxonomist Plants No. of species Mosses 15,000 Ferns and allies 13,025 Gymnosperms 980 Dicotyledons 199,350 Monocotyledons 59,300 Green Algae 3,715 Red Algae 5,956 Lichens 10,000 Mushrooms 16,000 Brown Algae 2,849 Subtotal 28,849 Total 1,589,361 • We have millions of different kind of plants, animals and microorganism. We need to scientifically identify, name and classify all the living organism. • Taxonomy / Systematics is the branch of science deals with classification of organism. 2 • Q. What is Plant Taxonomy / Plant systematics We study plants because: Plants convert Carbon dioxide gas into Every things we eat comes Plants produce oxygen. We breathe sugars through the process of directly or indirectly from oxygen. We cannot live without photosynthesis. plants. oxygen. Many chemicals produced by the Study of plants science helps to Study of plants science helps plants used as learn more about the natural Plants provide fibres for paper or fabric. to conserve endangered medicine. world plants. We have millions of different kind of plants, animals and microorganism. -
What Is a Species, and What Is Not? Ernst Mayr Philosophy of Science
What Is a Species, and What Is Not? Ernst Mayr Philosophy of Science, Vol. 63, No. 2. (Jun., 1996), pp. 262-277. Stable URL: http://links.jstor.org/sici?sici=0031-8248%28199606%2963%3A2%3C262%3AWIASAW%3E2.0.CO%3B2-H Philosophy of Science is currently published by The University of Chicago Press. Your use of the JSTOR archive indicates your acceptance of JSTOR's Terms and Conditions of Use, available at http://www.jstor.org/about/terms.html. JSTOR's Terms and Conditions of Use provides, in part, that unless you have obtained prior permission, you may not download an entire issue of a journal or multiple copies of articles, and you may use content in the JSTOR archive only for your personal, non-commercial use. Please contact the publisher regarding any further use of this work. Publisher contact information may be obtained at http://www.jstor.org/journals/ucpress.html. Each copy of any part of a JSTOR transmission must contain the same copyright notice that appears on the screen or printed page of such transmission. The JSTOR Archive is a trusted digital repository providing for long-term preservation and access to leading academic journals and scholarly literature from around the world. The Archive is supported by libraries, scholarly societies, publishers, and foundations. It is an initiative of JSTOR, a not-for-profit organization with a mission to help the scholarly community take advantage of advances in technology. For more information regarding JSTOR, please contact [email protected]. http://www.jstor.org Tue Aug 21 14:59:32 2007 WHAT IS A SPECIES, AND WHAT IS NOT?" ERNST MAYRT I analyze a number of widespread misconceptions concerning species. -
PART II PERSONAL PAPERS and ORGANIZATIONAL RECORDS Allen, Paul Hamilton, 1911-1963 Collection 1 RG 4/1/5/15 Photographs, 1937-1959 (1.0 Linear Feet)
PART II PERSONAL PAPERS AND ORGANIZATIONAL RECORDS Allen, Paul Hamilton, 1911-1963 Collection 1 RG 4/1/5/15 Photographs, 1937-1959 (1.0 linear feet) Paul Allen was a botanist and plantsman of the American tropics. He was student assistant to C. W. Dodge, the Garden's mycologist, and collector for the Missouri Botanical Garden expedition to Panama in 1934. As manager of the Garden's tropical research station in Balboa, Panama, from 1936 to 1939, he actively col- lected plants for the Flora of Panama. He was the representative of the Garden in Central America, 1940-43, and was recruited after the War to write treatments for the Flora of Panama. The photos consist of 1125 negatives and contact prints of plant taxa, including habitat photos, herbarium specimens, and close-ups arranged in alphabetical order by genus and species. A handwritten inventory by the donor in the collection file lists each item including 19 rolls of film of plant communities in El Salvador, Costa Rica, Honduras, Nicaragua, and Panama. The collection contains 203 color slides of plants in Panama, other parts of Central America, and North Borneo. Also included are black and white snapshots of Panama, 1937-1944, and specimen photos presented to the Garden's herbarium. Allen's field books and other papers that may give further identification are housed at the Hunt Institute of Botanical Documentation. Copies of certain field notebooks and specimen books are in the herbarium curator correspondence of Robert Woodson, (Collection 1, RG 4/1/1/3). Gift, 1983-1990. ARRANGEMENT: 1) Photographs of Central American plants, no date; 2) Slides, 1947-1959; 3) Black and White photos, 1937-44. -
Systematics in Palaeontology
Systematics in palaeontology THOMAS NEVILLE GEORGE PRESIDENT'S ANNIVERSARY ADDRESS 1969 CONTENTS Fossils in neontological categories I98 (A) Purpose and method x98 (B) Linnaean taxa . x99 (e) The biospecies . 202 (D) Morphology and evolution 205 The systematics of the lineage 205 (A) Bioserial change 205 (B) The palaeodeme in phyletic series 209 (e) Palaeodemes as facies-controlled phena 2xi Phyletic series . 2~6 (A) Rates of bioserial change 2~6 (B) Character mosaics 218 (c) Differential characters 222 Phylogenetics and systematics 224 (A) Clade and grade 224 (a) Phylogenes and cladogenes 228 (e) Phylogenetic reconstruction 23 I (D) Species and genus 235 (~) The taxonomic hierarchy 238 5 Adansonian methods 240 6 References 243 SUMMARY A 'natural' taxonomic system, inherent in evolutionary change, pulses of biased selection organisms that themselves demonstrate their pressure in expanded and restricted palaeo- 'affinity', is to be recognized perhaps only in demes, and permutations of character-expres- the biospecies. The concept of the biospecies as sion in the evolutionary plexus impose a need a comprehensive taxon is, however, only for a palaeontologically-orientated systematics notional amongst the vast majority of living under which (in evolutionary descent) could organisms, and it is not directly applicable to be subsumed the taxa of the neontological fossils. 'Natural' systems of Linnaean kind rest moment. on assumptions made a priori and are imposed Environmentally controlled morphs, bio- by the systematist. The graded time-sequence facies variants, migrating variation fields, and of the lineage and the clade introduces factors typological segregants are sources of ambiguity into a systematics that cannot well be accommo- in a distinction between phenetic and genetic dated under pre-Darwinian assumptions or be fossil grades. -
Full of Beans: a Study on the Alignment of Two Flowering Plants Classification Systems
Full of beans: a study on the alignment of two flowering plants classification systems Yi-Yun Cheng and Bertram Ludäscher School of Information Sciences, University of Illinois at Urbana-Champaign, USA {yiyunyc2,ludaesch}@illinois.edu Abstract. Advancements in technologies such as DNA analysis have given rise to new ways in organizing organisms in biodiversity classification systems. In this paper, we examine the feasibility of aligning two classification systems for flowering plants using a logic-based, Region Connection Calculus (RCC-5) ap- proach. The older “Cronquist system” (1981) classifies plants using their mor- phological features, while the more recent Angiosperm Phylogeny Group IV (APG IV) (2016) system classifies based on many new methods including ge- nome-level analysis. In our approach, we align pairwise concepts X and Y from two taxonomies using five basic set relations: congruence (X=Y), inclusion (X>Y), inverse inclusion (X<Y), overlap (X><Y), and disjointness (X!Y). With some of the RCC-5 relationships among the Fabaceae family (beans family) and the Sapindaceae family (maple family) uncertain, we anticipate that the merging of the two classification systems will lead to numerous merged solutions, so- called possible worlds. Our research demonstrates how logic-based alignment with ambiguities can lead to multiple merged solutions, which would not have been feasible when aligning taxonomies, classifications, or other knowledge or- ganization systems (KOS) manually. We believe that this work can introduce a novel approach for aligning KOS, where merged possible worlds can serve as a minimum viable product for engaging domain experts in the loop. Keywords: taxonomy alignment, KOS alignment, interoperability 1 Introduction With the advent of large-scale technologies and datasets, it has become increasingly difficult to organize information using a stable unitary classification scheme over time. -
Reminder Arthur Cronquist Dies PROGRAMS the Jekyll and Hyde Of
May - Julie 1992 Vol. 2, No. 3 Reminder the Jekyll and Hyde The spring is passing by, and it's time to pay those 1992 dues if you haven't already done so. Please check of the Long Island Flora this issue's mailing label. If the code *NP* appears, we haven't yet received your membership renewal. Dr. John Fogg, in his wonderful Wectis of Lawn Membership is $10.00 per calendar year. Make and Garden (1945) called poke (Phylolaccu nnlcricnnu checks payable to: L.I. Botanical Socicty and mail to: L.) the "Jekyll and Hyde of thc plant worltl," and Lois Lindberg, Membership revealed his horticultural disdain by suggesting "... war Welwyn Prcscrve should be declared on all suspects [sectllings hclicvcd LO Cresccnt Bcach Rd. represent poke] and they should be ruthlessly Glen Covc, NY 11542 liquidated." Knowledge gained since Dr. Fogg's 1945 If you hnvc rcceivcd a co~nplimentarynewsletter, insights has shown him to be more corrcct in his please indicalc if you would likc to remain on our assessment of the good vs. evil, yinlyang of pokc than mailing list. he could have ever expected. Arthur Cronquist Dies On March 22, 1992, Arthur Cronquist of the New York Botanical Garden died of a heart attack while working on the Intermountain Flora in Utah. The New York Botanical Garden will have a memorial service on May 5, 1992 at 11:00 a.m. For more information contact the New York Botanical Garden. If you wish to submit reminiscences of Dr. Cronquist we will gather Beyond being a garden pest, poke is dangerous. -
The Tempo and Mode of Evolution Reconsidered Stephen Jay Gould
Punctuated Equilibria: The Tempo and Mode of Evolution Reconsidered Stephen Jay Gould; Niles Eldredge Paleobiology, Vol. 3, No. 2. (Spring, 1977), pp. 115-151. Stable URL: http://links.jstor.org/sici?sici=0094-8373%28197721%293%3A2%3C115%3APETTAM%3E2.0.CO%3B2-H Paleobiology is currently published by Paleontological Society. Your use of the JSTOR archive indicates your acceptance of JSTOR's Terms and Conditions of Use, available at http://www.jstor.org/about/terms.html. JSTOR's Terms and Conditions of Use provides, in part, that unless you have obtained prior permission, you may not download an entire issue of a journal or multiple copies of articles, and you may use content in the JSTOR archive only for your personal, non-commercial use. Please contact the publisher regarding any further use of this work. Publisher contact information may be obtained at http://www.jstor.org/journals/paleo.html. Each copy of any part of a JSTOR transmission must contain the same copyright notice that appears on the screen or printed page of such transmission. The JSTOR Archive is a trusted digital repository providing for long-term preservation and access to leading academic journals and scholarly literature from around the world. The Archive is supported by libraries, scholarly societies, publishers, and foundations. It is an initiative of JSTOR, a not-for-profit organization with a mission to help the scholarly community take advantage of advances in technology. For more information regarding JSTOR, please contact [email protected]. http://www.jstor.org Sun Aug 19 19:30:53 2007 Paleobiology. -
Plant Science Bulletin A
PLANT SCIENCE BULLETIN A. Publication of the &tanical Societyof A.merica,Inc. VOLUME 3 JULY, 1957 NUMBER 3 Genetics, Corn, and Potato in the USSR ANTON LANG Department of Botany, Univ. of California. Los Angeles In April. 1956, the Soviet Russian government an- corn. He declared that, corn being a cross-pollinating nounced the resignation of T. D. Lysenko as president plant, inbreeding would lead to a "biological im- of the All-Union Lenin Academy of Agricultural poverishment of its genetical basis," that a "half-dead Science. This event signified theencL of the period of organism" would result, and that it would be impossible absolute domination which the so-called Soviet or to maintain inbred lines for more than 10 or 11 genera- Michurin-Lysenko genetics had enjoyed in the USSR. tions.2 He ridiculed the idea that crossing such inbreds This time therefore seemsappropriate for assessingsome could produce a superior plant. Instead, he advocated of the consequenceswhich the Lysenkoist experiment the use of varietal hybrids, asserting. in addition. that had for the USSR. The losses suffered by science can their hybrid vigor would not be limited to Fl' but be appreciated fairly easily. although it will probably would persist through F2 and Fs. take a long time before all details will be known. Any Under Lysenko's influence. breeding of hybrid corn person with some appreciation for the continuity of (in the "Western" sense) was completely abandoned scientific work can visualize how an experimental science in the USSR for more than 10 years, until 1947. when will be affected by eight years of almost total suppres- the All-Union Institute of Plant Industry (formerly sion. -
Reader 19 05 19 V75 Timeline Pagination
Plant Trivia TimeLine A Chronology of Plants and People The TimeLine presents world history from a botanical viewpoint. It includes brief stories of plant discovery and use that describe the roles of plants and plant science in human civilization. The Time- Line also provides you as an individual the opportunity to reflect on how the history of human interaction with the plant world has shaped and impacted your own life and heritage. Information included comes from secondary sources and compila- tions, which are cited. The author continues to chart events for the TimeLine and appreciates your critique of the many entries as well as suggestions for additions and improvements to the topics cov- ered. Send comments to planted[at]huntington.org 345 Million. This time marks the beginning of the Mississippian period. Together with the Pennsylvanian which followed (through to 225 million years BP), the two periods consti- BP tute the age of coal - often called the Carboniferous. 136 Million. With deposits from the Cretaceous period we see the first evidence of flower- 5-15 Billion+ 6 December. Carbon (the basis of organic life), oxygen, and other elements ing plants. (Bold, Alexopoulos, & Delevoryas, 1980) were created from hydrogen and helium in the fury of burning supernovae. Having arisen when the stars were formed, the elements of which life is built, and thus we ourselves, 49 Million. The Azolla Event (AE). Hypothetically, Earth experienced a melting of Arctic might be thought of as stardust. (Dauber & Muller, 1996) ice and consequent formation of a layered freshwater ocean which supported massive prolif- eration of the fern Azolla.