9 Glutathione S-Transferases
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Comparative Modeling and Functional Characterization of Two Enzymes of the Cyclooxygenase Pathway in Drosophila Melanogaster
City University of New York (CUNY) CUNY Academic Works All Dissertations, Theses, and Capstone Projects Dissertations, Theses, and Capstone Projects 2-2014 Comparative Modeling and Functional Characterization of Two Enzymes of the Cyclooxygenase Pathway in Drosophila melanogaster Yan Qi Graduate Center, City University of New York How does access to this work benefit ou?y Let us know! More information about this work at: https://academicworks.cuny.edu/gc_etds/94 Discover additional works at: https://academicworks.cuny.edu This work is made publicly available by the City University of New York (CUNY). Contact: [email protected] Comparative Modeling and Functional Characterization of Two Enzymes of the Cyclooxygenase Pathway in Drosophila melanogaster by Yan Qi A dissertation submitted to the Graduate Faculty in Biology in partial fulfillment of the requirements for the degree of Doctor of Philosophy, The City University of New York 2014 i © 2014 Yan Qi All Rights Reserved ii This manuscript has been read and accepted for the Graduate Faculty in Biology in satisfaction of the dissertation requirement for the degree of Doctor of Philosophy. _______ ______________________ Date Chair of Examining Committee Dr. Shaneen Singh, Brooklyn College _______ ______________________ Date Executive Officer Dr. Laurel A. Eckhardt ______________________ Dr. Peter Lipke, Brooklyn College ______________________ Dr. Shubha Govind, City College ______________________ Dr. Richard Magliozzo, Brooklyn College ______________________ Dr. Evros Vassiliou, Kean University Supervising Committee The City University of New York iii Abstract Comparative Modeling and Functional Characterization of Two Enzymes of the Cyclooxygenase Pathway in Drosophila melanogaster by Yan Qi Mentor: Shaneen Singh Eicosanoids are biologically active molecules oxygenated from twenty carbon polyunsaturated fatty acids. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
GT Lauram.Sc Thesis (FINAL)
OPTIMIZATION OF OVER-EXPRESSION AND PURIFICATION OF HUMAN LEUKOTRIENE C4 SYNTHASE MUTANT R104A FOR STRUCTURE-FUNCTION STUDIES BY TWO-DIMENSIONAL CRYSTALLIZATION AND ELECTRON CRYSTALLOGRAPHY A Thesis Presented to The Academic Faculty by Laura Yaunhee Kim In Partial Fulfillment of the Requirements for the Degree Master of Science in the School of Biology Georgia Institute of Technology December 2012 OPTIMIZATION OF OVER-EXPRESSION AND PURIFICATION OF HUMAN LEUKOTRIENE C4 SYNTHASE MUTANT R104A FOR STRUCTURE-FUNCTION STUDIES BY TWO-DIMENSIONAL CRYSTALLIZATION AND ELECTRON CRYSTALLOGRAPHY Approved by: Dr. Ingeborg Schmidt-Krey, Advisor School of Biology School of Chemistry and Biochemistry Georgia Institute of Technology Dr. Thomas DiChristina School of Biology Georgia Institute of Technology Dr. Raquel L. Lieberman School of Chemistry and Biochemistry Georgia Institute of Technology Date Approved: July 24, 2012 I dedicate this work to my father Sun Dong Kim, mother In Ok Kim, and sister Esther Kim, who have supported me from the very beginning. This work could not have been completed without your love and encouragement. ACKNOWLEDGEMENTS I would like to thank my advisor, Dr. Inga Schmidt-Krey, for guiding and supporting me throughout my academic studies. I would like to thank her for her consistent availability and scientific input during every step of research. Without her guidance this work would not have been possible. I am in debt to my family and friends for their unflinching support and encouragement, without which none of this would be possible. I am also very grateful to all the Schmidt-Krey lab members, especially Matthew Johnson and Maureen Metcalfe, for their support and input into this work. -
GSTK1 Rabbit Pab
Leader in Biomolecular Solutions for Life Science GSTK1 Rabbit pAb Catalog No.: A5226 1 Publications Basic Information Background Catalog No. This gene encodes a member of the kappa class of the glutathione transferase A5226 superfamily of enzymes that function in cellular detoxification. The encoded protein is localized to the peroxisome and catalyzes the conjugation of glutathione to a wide Observed MW range of hydrophobic substates facilitating the removal of these compounds from cells. 25KDa Alternative splicing results in multiple transcript variants. Calculated MW 20kDa/24kDa/25kDa/31kDa Category Primary antibody Applications WB, IHC, IF Cross-Reactivity Human, Mouse, Rat Recommended Dilutions Immunogen Information WB 1:500 - 1:2000 Gene ID Swiss Prot 373156 Q9Y2Q3 IHC 1:50 - 1:100 Immunogen 1:50 - 1:100 IF Recombinant fusion protein containing a sequence corresponding to amino acids 1-226 of human GSTK1 (NP_057001.1). Synonyms GSTK1;GST;GST 13-13;GST13;GST13-13;GSTK1-1;hGSTK1 Contact Product Information www.abclonal.com Source Isotype Purification Rabbit IgG Affinity purification Storage Store at -20℃. Avoid freeze / thaw cycles. Buffer: PBS with 0.02% sodium azide,50% glycerol,pH7.3. Validation Data Western blot analysis of extracts of various cell lines, using GSTK1 antibody (A5226) at 1:1000 dilution. Secondary antibody: HRP Goat Anti-Rabbit IgG (H+L) (AS014) at 1:10000 dilution. Lysates/proteins: 25ug per lane. Blocking buffer: 3% nonfat dry milk in TBST. Detection: ECL Basic Kit (RM00020). Exposure time: 60s. Immunohistochemistry of paraffin- Immunohistochemistry of paraffin- Immunohistochemistry of paraffin- embedded human lung cancer using embedded human liver cancer using embedded human thyroid cancer using GSTK1 Rabbit pAb (A5226) at dilution of GSTK1 Rabbit pAb (A5226) at dilution of GSTK1 Rabbit pAb (A5226) at dilution of 1:25 (40x lens). -
Characterization of Visceral and Subcutaneous Adipose Tissue
J. Perinat. Med. 2016; 44(7): 813–835 Shali Mazaki-Tovi*, Adi L. Tarca, Edi Vaisbuch, Juan Pedro Kusanovic, Nandor Gabor Than, Tinnakorn Chaiworapongsa, Zhong Dong, Sonia S. Hassan and Roberto Romero* Characterization of visceral and subcutaneous adipose tissue transcriptome in pregnant women with and without spontaneous labor at term: implication of alternative splicing in the metabolic adaptations of adipose tissue to parturition DOI 10.1515/jpm-2015-0259 groups (unpaired analyses) and adipose tissue regions Received July 27, 2015. Accepted October 26, 2015. Previously (paired analyses). Selected genes were tested by quantita- published online March 19, 2016. tive reverse transcription-polymerase chain reaction. Abstract Results: Four hundred and eighty-two genes were differ- entially expressed between visceral and subcutaneous Objective: The aim of this study was to determine gene fat of pregnant women with spontaneous labor at term expression and splicing changes associated with par- (q-value < 0.1; fold change > 1.5). Biological processes turition and regions (visceral vs. subcutaneous) of the enriched in this comparison included tissue and vascu- adipose tissue of pregnant women. lature development as well as inflammatory and meta- Study design: The transcriptome of visceral and abdomi- bolic pathways. Differential splicing was found for 42 nal subcutaneous adipose tissue from pregnant women at genes [q-value < 0.1; differences in Finding Isoforms using term with (n = 15) and without (n = 25) spontaneous labor Robust Multichip Analysis scores > 2] between adipose was profiled with the Affymetrix GeneChip Human Exon tissue regions of women not in labor. Differential exon 1.0 ST array. Overall gene expression changes and the dif- usage associated with parturition was found for three ferential exon usage rate were compared between patient genes (LIMS1, HSPA5, and GSTK1) in subcutaneous tissues. -
Whole Egg Consumption Increases Gene Expression Within the Glutathione Pathway in the Liver of Zucker Diabetic Fatty Rats
Food Science and Human Nutrition Publications Food Science and Human Nutrition 11-3-2020 Whole egg consumption increases gene expression within the glutathione pathway in the liver of Zucker Diabetic Fatty rats Joe L. Webb Iowa State University Amanda E. Bries Iowa State University, [email protected] Brooke Vogel Iowa State University Claudia Carrillo Iowa State University, [email protected] Lily Harvison Iowa State University, [email protected] See next page for additional authors Follow this and additional works at: https://lib.dr.iastate.edu/fshn_hs_pubs Part of the Dietetics and Clinical Nutrition Commons, Endocrinology, Diabetes, and Metabolism Commons, Exercise Science Commons, Food Chemistry Commons, Human and Clinical Nutrition Commons, and the Molecular, Genetic, and Biochemical Nutrition Commons The complete bibliographic information for this item can be found at https://lib.dr.iastate.edu/ fshn_hs_pubs/38. For information on how to cite this item, please visit http://lib.dr.iastate.edu/ howtocite.html. This Article is brought to you for free and open access by the Food Science and Human Nutrition at Iowa State University Digital Repository. It has been accepted for inclusion in Food Science and Human Nutrition Publications by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Whole egg consumption increases gene expression within the glutathione pathway in the liver of Zucker Diabetic Fatty rats Abstract Nutrigenomic evidence supports the idea that Type 2 Diabetes Mellitus (T2DM) arises due to the interactions between the transcriptome, individual genetic profiles, lifestyle, and diet. Since eggs are a nutrient dense food containing bioactive ingredients that modify gene expression, our goal was to examine the role of whole egg consumption on the transcriptome during T2DM. -
GSTZ1 Deficiency Promotes Hepatocellular Carcinoma
Li et al. Journal of Experimental & Clinical Cancer Research (2019) 38:438 https://doi.org/10.1186/s13046-019-1459-6 RESEARCH Open Access GSTZ1 deficiency promotes hepatocellular carcinoma proliferation via activation of the KEAP1/NRF2 pathway Jingjing Li1,2†, Qiujie Wang1†, Yi Yang1, Chong Lei1, Fan Yang1, Li Liang1, Chang Chen3, Jie Xia1, Kai Wang1* and Ni Tang1* Abstract Background: Glutathione S-transferase zeta 1 (GSTZ1) is the penultimate enzyme in phenylalanine/tyrosine catabolism. GSTZ1 is dysregulated in cancers; however, its role in tumorigenesis and progression of hepatocellular carcinoma (HCC) is largely unknown. We aimed to assess the role of GSTZ1 in HCC and to reveal the underlying mechanisms, which may contribute to finding a potential therapeutic strategy against HCC. Methods: We first analyzed GSTZ1 expression levels in paired human HCC and adjacent normal tissue specimens and the prognostic effect of GSTZ1 on HCC patients. Thereafter, we evaluated the role of GSTZ1 in aerobic glycolysis in HCC cells on the basis of the oxygen consumption rate (OCR) and extracellular acidification rate (ECAR). Furthermore, we assessed the effect of GSTZ1 on HCC proliferation, glutathione (GSH) concentration, levels of reactive oxygen species (ROS), and nuclear factor erythroid 2-related factor 2 (NRF2) signaling via gain- and loss- of GSTZ1 function in vitro. Moreover, we investigated the effect of GSTZ1 on diethylnitrosamine (DEN) and carbon tetrachloride (CCl4)induced hepatocarcinogenesis in a mouse model of HCC. Results: GSTZ1 was downregulated in HCC, thus indicating a poor prognosis. GSTZ1 deficiency significantly promoted hepatoma cell proliferation and aerobic glycolysis in HCC cells. Moreover, loss of GSTZ1 function depleted GSH, increased ROS levels, and enhanced lipid peroxidation, thus activating the NRF2-mediated antioxidant pathway. -
Age-Related Changes in Mirna Expression Influence GSTZ1 and Other Drug Metabolizing Enzymes S
Supplemental material to this article can be found at: http://dmd.aspetjournals.org/content/suppl/2020/04/30/dmd.120.090639.DC1 1521-009X/48/7/563–569$35.00 https://doi.org/10.1124/dmd.120.090639 DRUG METABOLISM AND DISPOSITION Drug Metab Dispos 48:563–569, July 2020 Copyright ª 2020 by The American Society for Pharmacology and Experimental Therapeutics Age-Related Changes in miRNA Expression Influence GSTZ1 and Other Drug Metabolizing Enzymes s Stephan C. Jahn, Lauren A. Gay, Claire J. Weaver, Rolf Renne, Taimour Y. Langaee,Department of Pharmacotherapy and Translational Research. Peter W. Stacpoole, and Margaret O. James Departments of Medicinal Chemistry (S.C.J., C.J.W., M.O.J.), Pharmacotherapy and Translational Research (T.Y.L.), Medicine (P.W.S.), Biochemistry and Molecular Biology (P.W.S.), and Molecular Genetics and Microbiology (L.A.G., R.R.), University of Florida, Gainesville, Florida Received January 1, 2020; accepted April 7, 2020 ABSTRACT Previous work has shown that hepatic levels of human glutathione miR-376c-3p could downregulate GSTZ1 protein expression. Our Downloaded from transferase zeta 1 (GSTZ1) protein, involved in tyrosine catabolism findings suggest that miR-376c-3p prevents production of GSTZ1 and responsible for metabolism of the investigational drug dichlor- through inhibition of translation. These experiments further our oacetate, increase in cytosol after birth before reaching a plateau understanding of GSTZ1 regulation. Furthermore, our array results around age 7. However, the mechanism regulating this change of provide a database resource for future studies on mechanisms expression is still unknown, and previous studies showed that regulating human hepatic developmental expression. -
Human Induced Pluripotent Stem Cell–Derived Podocytes Mature Into Vascularized Glomeruli Upon Experimental Transplantation
BASIC RESEARCH www.jasn.org Human Induced Pluripotent Stem Cell–Derived Podocytes Mature into Vascularized Glomeruli upon Experimental Transplantation † Sazia Sharmin,* Atsuhiro Taguchi,* Yusuke Kaku,* Yasuhiro Yoshimura,* Tomoko Ohmori,* ‡ † ‡ Tetsushi Sakuma, Masashi Mukoyama, Takashi Yamamoto, Hidetake Kurihara,§ and | Ryuichi Nishinakamura* *Department of Kidney Development, Institute of Molecular Embryology and Genetics, and †Department of Nephrology, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan; ‡Department of Mathematical and Life Sciences, Graduate School of Science, Hiroshima University, Hiroshima, Japan; §Division of Anatomy, Juntendo University School of Medicine, Tokyo, Japan; and |Japan Science and Technology Agency, CREST, Kumamoto, Japan ABSTRACT Glomerular podocytes express proteins, such as nephrin, that constitute the slit diaphragm, thereby contributing to the filtration process in the kidney. Glomerular development has been analyzed mainly in mice, whereas analysis of human kidney development has been minimal because of limited access to embryonic kidneys. We previously reported the induction of three-dimensional primordial glomeruli from human induced pluripotent stem (iPS) cells. Here, using transcription activator–like effector nuclease-mediated homologous recombination, we generated human iPS cell lines that express green fluorescent protein (GFP) in the NPHS1 locus, which encodes nephrin, and we show that GFP expression facilitated accurate visualization of nephrin-positive podocyte formation in -
Dmd.120.000143.Full.Pdf
DMD Fast Forward. Published on September 1, 2020 as DOI: 10.1124/dmd.120.000143 This article has not been copyedited and formatted. The final version may differ from this version. Drug Metabolism and Disposition Exposure of Rats to Multiple Oral Doses of Dichloroacetate Results in Upregulation of Hepatic GSTs and NQO1 Edwin J. Squirewell, Ricky Mareus, Lloyd P. Horne, Peter W. Stacpoole, and Margaret O. James Downloaded from Department of Medicinal Chemistry (E.J.S., R.M., M.O.J.), Department of Medicine (L.P.H., P.W.S.), and Department of Biochemistry and Molecular Biology (P.W.S.), University of Florida, Gainesville FL dmd.aspetjournals.org at ASPET Journals on October 1, 2021 1 DMD Fast Forward. Published on September 1, 2020 as DOI: 10.1124/dmd.120.000143 This article has not been copyedited and formatted. The final version may differ from this version. Running title: Repeated DCA dosing in Rats Increases Hepatic GSTs and NQO1 Address correspondence to: Dr. Margaret O. James, Department of Medicinal Chemistry, University of Florida College of Pharmacy, 1345 Center Drive, Gainesville, FL 32610. Tel: 352-273-7707. Email: [email protected] Downloaded from Number of text pages: 16 Number of tables: 3 Number of figures: 3 dmd.aspetjournals.org Number of references: 77 Number of words in the Abstract: 250 Number of words in Introduction: 657 at ASPET Journals on October 1, 2021 Number of words in Discussion: 1512 Abbreviations: DCA, dichloroacetate; DCPIP, 2,6-dichlorophenolindophenol; DCNB, 1,2-dichloro-4- nitrobenzene; CDNB, 1-chloro-2,4-dinitrobenzene, NQO1, NAD(P)H dehydrogenase [quinone] 1; NBD-Cl, 7-chloro-4-nitrobenzo-2-oxa-1,3-diazole; GCLC, glutamylcysteine ligase complex; GSS, glutathione synthetase; GSH, glutathione; GSTZ1, glutathione transferase zeta 1; MAAI, maleylacetoacetate isomerase; PDK, pyruvate dehydrogenase kinase; PDC, pyruvate dehydrogenase complex; ROS, reactive oxygen species; S.D., standard deviation. -
Disruption of GSTZ1 Gene by Large Genetic Alteration in Oryza Glaberrima
Breeding Science 54 : 67-73 (2004) Disruption of GSTZ1 Gene by Large Genetic Alteration in Oryza glaberrima Tokuji Tsuchiya and Ikuo Nakamura* Graduate School of Science and Technology, Chiba University, 648 Matsudo, Matsudo, Chiba 271-8510, Japan After the completion of the genome sequencing project Introduction of common rice (Oryza sativa L.), comparative genomic studies between rice and related species became impor- Glutathione S-transferases (GSTs; EC 2.5.1.18) are tant to reveal the function of each gene. The rice ge- ubiquitous and abundant detoxifying enzymes in all the organ- nome contains two copies of the gene encoding zeta class isms, such as bacteria, fungi, animals and plants. Recently, glutathione S-transferase (GSTZ) that is reported to be plant GSTs have been classified into four different classes, the enzyme in the catabolic pathway of tyrosine and phi, tau, theta and zeta, based on amino acid sequence simi- phenylalanine. Two GSTZ genes of O. sativa, OsGSTZ1 larity and gene structure (Dixon et al. 1998, Edward et al. and OsGSTZ2, display a tandem arrangement. Up- 2000). The phi and tau GST genes are plant-specific and com- stream OsGSTZ1 gene is constitutively expressed, pose large multi-gene families, whereas the theta and zeta whereas the downstream OsGSTZ2 gene is inducible by GST genes have a few copies. The zeta class GST (GSTZ) stresses. We analyzed the expression of the GSTZ gene genes are present as one or two copies in every plant genome in the African cultivated species O. glaberrima and wild studied, such as A. thaliana, maize, soybean, carnation and species O. -
Crystal Structure of Microsomal Prostaglandin E2 Synthase Provides Insight Into Diversity in the MAPEG Superfamily
Crystal structure of microsomal prostaglandin E2 synthase provides insight into diversity in the MAPEG superfamily Tove Sjögrena,1, Johan Nordb, Margareta Eka, Patrik Johanssona, Gang Liub, and Stefan Geschwindnera,1 aDiscovery Sciences, AstraZeneca R&D Mölndal, S-43183 Mölndal, Sweden; and bDepartment of Neuroscience, AstraZeneca R&D Södertälje, S-151 85 Södertälje, Sweden Edited by R. Michael Garavito, Michigan State University, East Lansing, MI, and accepted by the Editorial Board January 17, 2013 (received for review October 24, 2012) fl Prostaglandin E2 (PGE2) is a key mediator in in ammatory re- with mPGES-1. Leukotriene C4 (LTC4) synthase, 5-lipoxygenase sponse. The main source of inducible PGE2, microsomal PGE2 syn- activating protein (FLAP), MGST2, and MGST3 are more dis- thase-1 (mPGES-1), has emerged as an interesting drug target for tantly related with a sequence identity of 15–30%. Initial struc- treatment of pain. To support inhibitor design, we have deter- tural characterization of the MAPEG family was done using mined the crystal structure of human mPGES-1 to 1.2 Å resolution. electron crystallography and showed that the members contain The structure reveals three well-defined active site cavities within four transmembrane helices and are organized as trimers (8, 9). the membrane-spanning region in each monomer interface of This was later confirmed by the X-ray crystal structures of FLAP the trimeric structure. An important determinant of the active (10) and LTC4 synthase (11, 12). There are also low-resolution site cavity is a small cytosolic domain inserted between trans- 3D electron crystallography structures of MGST1 and mPGES-1 membrane helices I and II.