A Study of the Effects of Phytohormones on Aging of Caenorhabditis Elegans

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A Study of the Effects of Phytohormones on Aging of Caenorhabditis Elegans Palacký University in Olomouc Faculty of Science Laboratory of Growth Regulators & Department of Botany A study of the effects of phytohormones on aging of Caenorhabditis elegans Doctoral thesis Mgr. Alena Kadlecová Study Programme: P1527 / Biology Field of Study: 1507V004 / Botany Form: Full-time Olomouc 2019 Supervisor: Prof. Ing. Miroslav Strnad, CSc. DSc. Consultant: Mgr. Jiríˇ Voller, Ph.D. Bibliographical identification Author’s first name and surname : Mgr. Alena Kadlecová Title of thesis : A study of the effects of phytohormones on aging of Caenorhabditis elegans Type of thesis : Doctoral Department : Laboratory of Growth Regulators Supervisor : Prof. Ing. Miroslav Strnad, CSc. DSc. Consultant : Mgr. Jiríˇ Voller, Ph.D. The year of presentation : 2019 Abstract : Cytokinins, a class of phytohormones involved in various aspects of plant growth and development, are also known to have diverse activities in animal models and humans. This thesis is directed to investigating the multiple protective effects of cytokinin bases which include anti-oxidative effect, anti-aging activity in skin cells and flies and neuroprotective effects in several in vitro and in vivo models. For detailed examination of these effects, we used the well-established model of aging – the nematode Caenorhabditis elegans. The results show that several cytokinins (both natural and synthetic derivatives prepared in our laboratory) – were able to increase the lifespan and/or stress resistance of the worms. We also carried out the initial steps to finding out more about the mechanism of action and metabolization of the best known active cytokinin – kinetin. Keywords : Cytokinins, kinetin, Caenorhabditis elegans, aging, longevity, stress resistance. Number of pages : 42 (+ 64 pages of supplements) Number of appendices : 4 Language : English Bibliografická identifikace Jméno a príjmeníˇ : Mgr. Alena Kadlecová Název práce : Studium vlivu fytohormon˚una stárnutí Caenorhabditis elegans Typ práce : Dizertacníˇ Pracovišteˇ : Laboratorˇ r˚ustových regulátor˚u Vedoucí práce : Prof. Ing. Miroslav Strnad, CSc. DSc. Konzultant : Mgr. Jiríˇ Voller, Ph.D. Rok obhajoby práce : 2019 Abstrakt : Cytokininy, fytohormony podílející se na r˚ustua vývoji rostlin, jsou také známy pro své r˚uznorodéúcinkyˇ v živociších.ˇ V této práci jsme se zameˇriliˇ na protektivní efekt cy- tokininových bází. Ty jsou dle drívˇ ejšíchˇ studií schopny napríkladˇ zpomalovat stárnutí lidských kožních bunekˇ a octomilek a mají antioxidativní a neuroprotektivní úcinkyˇ v in vitro a in vivo modelech. Pro podrobnejšíˇ studium jejich aktivity jsme zvolili hád’átko obecné (Caenorhabdi- tis elegans), jakožto dobreˇ zavedený model stárnutí. Zjistili jsme, že radaˇ cytokinin˚u– a to jak prírodníchˇ látek, tak jejich syntetických derivát˚u– dokáže proloužit délku života a/nebo zvýšit rezistenci C. elegans ke stresu. Provedli jsme také pilotní exprerimenty s cílem lépe porozumetˇ metabolismu a mechanismu úcinkuˇ nejlépe prostudovaného aktivního cytokininu, kinetinu. Klícovᡠslova : Cytokininy, kinetin, Caenorhabditis elegans, stárnutí, dlouhovekost,ˇ odolnost v˚uciˇ stresu. Pocetˇ stran : 42 (+ 64 stran príloh)ˇ Pocetˇ prílohˇ : 4 Jazyk : Anglický I declare that this thesis is my original work and that I used only the sources listed in the Bibliography section. In Olomouc, Mgr. Alena Kadlecová I would like to thank my supervisor Prof. Miroslav Strnad and my consultant Dr. Jiríˇ Voller for their input and advice. I would also like to thank our international collaborators, prof. Jan Kammenga from Wagengen University and Dr. Marta Artal-Sanz of the University Pablo de Olavide, as well as all of the members of their groups for allowing me to stay in their laboratories and learn a number of new valuable skills. I am also grateful to all of the members of Laboratory of Growth Regulators, especially the members of the "Anti-aging interventions" group for all of their support and advice, Dr. Ondrejˇ Novák and Hana Martínková for preforming the UHPLC- MS/MS analysis and Dr. Lenka Zahájská, Dr. Martin Hönig, Dr. Václav Mik and OlChemIm s.r.o for providing the test compounds. Last but not least, I would like to thank Mgr. Jan Michelfeit for his help with programming. Contents 1 Introduction and aims of this work 5 2 Literature review 6 2.1 Cytokinins . .6 2.1.1 Discovery of cytokinins . .7 2.1.2 Biosynthesis, metabolism and activity in plants . .7 2.1.3 Protective effect of cytokinins in animal models . .8 2.2 Caenorhabitis elegans .............................. 10 2.2.1 C. elegans as a model of aging . 13 3 Materials and methods 15 3.1 Strains . 15 3.2 Compounds . 15 3.3 Basic cultivation protocols . 15 3.4 Chitinase assay . 16 3.5 Visual evaluation of lifespan in 96-well plates . 17 3.6 Stress assays . 17 3.6.1 Visual evaluation of stress resistance in 96-well plates . 17 3.6.2 Automated microscopy and image analysis . 17 3.7 Preparation of worm extracts and UHPLC-MS/MS analysis . 18 4 Results and discussion 19 4.1 Protective effect of natural cytokinin bases . 19 4.2 Protective effect of selected cytokinin derivatives . 26 5 Conclusions and future perspectives 29 References 30 6 List of published papers and other contributions 41 1 7 Supplements 43 7.1 Supplement 1 . 43 7.2 Supplement 2 . 56 7.3 Supplement 3 . 69 7.4 Supplement 4 . 82 2 List of abbreviations C. elegans Caenorhabditis elegans cZ cis-zeatin E. coli Escherichia coli tZ trans-zeatin AMP adenosine monophosphate AMPK AMP-activated protein kinase ATP adenosine triphosphate BAP 6-benzylaminopurine DHZ dihydrozeatin DMSO dimethylsulfoxid FOXO Forkhead box protein O FUDR fluorodeoxyuridine HTS high-throughput screening IIS Insulin/insulin-like growth factor signalling pathway iPN 6-isopentenyladenine K kinetin KR kinetin riboside KRDP kinetin riboside-5’-diphosphate KRMP kinetin riboside-5’-monophosphate 3 KRTP kinetin riboside-5’-triphosphate LGR Laboratory of Growth Regulators mT meta-topolin mTOR mechanistic target of rampamycin NGM nematode growth medium oT ortho-topolin pT para-topolin ROS reactive oxygen species WT wild type 4 1 Introduction and aims of this work Cytokinins are plant hormones that play a crucial role in plant growth and development. Various activities of cytokinins in animal models and humans have also been reported over the years. While many cytokinin ribosides possess anti-cancer activity, protective and anti-aging effects have been described for some cytokinin bases. The purpose of this work was to investigate the protective and pro-longevity effects of natural cytokinin bases and their derivatives using the well-established and convenient model organism, Caenorhabditis elegans (C. elegans). We studied the effect of natural cytokinin bases on the lifespan and stress resistance of the worms and performed initial experiments aimed at establishing the mechanism of action and understanding the metabolism of the best known active natural compound, kinetin. We also tested dozens of cytokinin derivatives from the unique chemical library of Laboratory of Growth Regulators (LGR), and found several that are potentially more active than their natural counterparts. An important part of this thesis was a literature survey that served as a basis of two reviews, in which we summarized the health-promoting activity of cytokinins, especially kinetin, in animal models. 5 2 Literature review In this part of the thesis, we briefly describe the discovery and activity of cytokinins in plants and animal models, as well as discuss the advantages of using C. elegans as a model of aging. For detailed information on the protective activity of cytokinins in animal models, the readers are referred to our published review article and book chapter ([1, 2], supplements 2 and 4). 2.1 Cytokinins Cytokinins are a group of phytohormones implicated in various aspects of plant growth and development. Naturally occurring cytokinins are derivatives of adenine with either isoprenoid or aromatic side chain at position N6-. Examples of the best known cytokinin bases can be seen in Figure 1. Apart from bases, cytokinin ribosides, ribotides and conjugates with amino acids and sugars, most commonly glucose, can also be found in plants. Figure 1: Structures of selected cytokinin bases. A) kinetin. B) N6-isopentenyladenine. C) 6-benzylaminopurine. D) para-topolin. E) meta-topolin. F) ortho-topolin. G) trans-zeatin. H) cis-zeatin. I) dihydrozeatin 6 2.1.1 Discovery of cytokinins The discovery of cytokinins dates back to 1955, when Miller et al. isolated a derivative of adenine, N6-furfuryladenine, from autoclaved herring sperm [3]. In the presence of auxin, this compound was able to stimulate cytokinesis of plant cells and was therefore called kinetin (K). The first evidence of the natural occurrence of cytokinins came in the 1960s, when Letham and Miller partially isolated a compound which we now know as zeatin from maize (Zea mays) kernels [4]. K itself was long thought to be an artificial DNA rearrangement product. This changed in the 1990s, when K was found not only in plant extracts [5], but also in animal DNA [6] and later in human urine. [7]. Since then, various cytokinins were identified in other organisms apart from plants, including bacteria, fungi and mammals [8, 9, 10, 11]. 2.1.2 Biosynthesis, metabolism and activity in plants In plants, the biosynthesis of isoprenoid cytokinins is regulated by isopentenyl transferase [12, 13]. The enzyme converts ADP/ATP and dimethylallylpyrophosphate, produced by methylery- thritol phosphate pathway or the mevalonate pathway, into the active cytokinins, isopentenyl- adenosine-5’-diphosphate or -triphopshate. The isoprenoid side chain can be hydroxylated by cytochrome P450 enzymes, yielding trans-zeatin (tZ) ribotides. Ribotides can then be converted into their active, free base forms by the LONELY GUY family of enzymes [14]. That said, the biosynthesis of cytokinins with an aromatic side chain is not yet fully understood. On the other hand, cytokinin oxidases, enzymes able to cleave the N6- side chain, are re- sponsible for the degradation of cytokinins [15, 13]. Plants can also decrease the levels of active cytokinins through their conjugation to glucose, calatyzed by glucosyl transferases.
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