MECOSTA Phd Thesis 2014
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Jennings Et Al., 2002)
1 Food Webs Archimer December 2017, Volume 13, Pages 33-37 http://dx.doi.org/10.1016/j.fooweb.2017.08.001 http://archimer.ifremer.fr http://archimer.ifremer.fr/doc/00395/50614/ © 2017 Published by Elsevier Inc. Investigating feeding ecology of two anglerfish species, Lophius piscatorius and Lophius budegassa in the Celtic Sea using gut content and isotopic analyses Issac Pierre 1, 2, Robert Marianne 2, Le Bris Hervé 1, Rault Jonathan 2, Pawlowski Lionel 2, Kopp Dorothee 2 1 ESE, Ecology and Ecosystem Health, Agrocampus Ouest, INRA, 35042, Rennes, France 2 Ifremer, Unité de Sciences et Technologies Halieutiques, Laboratoire de Technologie et Biologie Halieutique, 8 rue François Toullec, F-56100, Lorient, France Abstract : We used stable isotope ratio and gut content analyses to determine and compare the feeding ecology of two commercially important predator species, Lophius piscatorius and Lophius budegassa in the Celtic sea, where data concerning their trophic ecology remain sparse. This study included two areas and two size-classes, showing that anglerfish in the Celtic sea are mainly piscivorous top predators as observed in other marine waters. However, a substantial part of the diet of the fish in the small size classes consists of benthic macro-invertebrates, mainly Crustaceans. Despite the common knowledge that they are opportunistic predators that display a low degree of prey selectivity, our results suggest that the two species have different trophic niches when they occur in the same area. In the shallow area, both small and large individuals of L. budegassa seemed to prefer Crustacean prey, whereas L. piscatorius showed a clear shift from Crustaceans to fish prey with increasing size-class in the two areas. -
The Osmoregulatory Metabolism Op the Starry Flounder, Platichthys Stellatus
THE OSMOREGULATORY METABOLISM OP THE STARRY FLOUNDER, PLATICHTHYS STELLATUS by CLEVELAND PENDLETON HICKMAN, JR. B.A., DePauw University, 1950 M.S., University of New Hampshire, 1953 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in the Department of Zoology We accept this thesis as conforming to the required standard. THE UNIVERSITY OF BRITISH COLUMBIA June, 1958 Faculty of Graduate Studies PROGRAMME OF THE FINAL ORAL EXAMINATION FOR THE DEGREE OF DOCTOR OF PHILOSOPHY of CLEVELAND PENDLETON HICKMAN JR. B.A. DePauw University, 1950 M.S. University of New Hampshire, 1953 IN ROOM 187A, BIOLOGICAL SCIENCES BUILDING MONDAY, JUNE 30, 1958 at 10:30 a.m. COMMITTEE IN CHARGE DEAN F. H. SOWARD, Chairman H. ADASKIN W. S. HOAR W. A. CLEMENS W. N. HOLMES I. McT. COWAN C. C. LINDSEY P. A. DEHNEL H. McLENNAN R. F. SCAGEL External Examiner: F. E. J. FRY University of Toronto THE OSMOREGULATORY METABOLISM OF THE STARRY FLOUNDER, PLATICHTYS STELLATUS ABSTRACT Energy demands for osmotic regulation and the possible osmoregulatory role of the thyroid gland were investigated in the euryhaline starry flounder, Platichthys stellatus. Using a melt• ing-point technique, it was established that flounder could regulate body fluid concentration independent of widely divergent environ• mental salinities. Small flounder experienced more rapid disturb• ances of body fluid concentration than large flounder after abrupt salinity alterations. The standard metabolic rate of flounder adapted to fresh water was consistently and significantly less than that of marine flounder. In supernormal salinities standard metabolic rate was significantly greater than in normal sea water. -
Full Text in Pdf Format
Vol. 3: 41–50, 2008 AQUATIC BIOLOGY Printed August 2008 doi: 10.3354/ab00062 Aquat Biol Published online July 1, 2008 OPEN ACCESS Effects of water temperature, salinity and feeding regimes on metamorphosis, growth and otolith Sr:Ca ratios of Megalops cyprinoides leptocephali Hui-Lun Chen1, Kang-Ning Shen1, Chih-Wei Chang3, 4, Yoshiyuki Iizuka5, Wann-Nian Tzeng1, 2,* 1Institute of Fisheries Science, and 2Department of Life Science, National Taiwan University, Taipei, Taiwan 106, ROC 3National Museum of Marine Biology and Aquarium, Pingtung, Taiwan 944, ROC 4Institute of Marine Biodiversity and Evolution, National Donghwa University, Hualien, Taiwan 974, ROC 5Institute of Earth Sciences, Academia Sinica, Nankang, Taipei, Taiwan 115, ROC National Taiwan University, Taipei, Taiwan 106, ROC ABSTRACT: We examined the effects of water temperature, salinity and feeding regime on lepto- cephalus metamorphosis, and on daily growth increment deposition and strontium:calcium (Sr:Ca) ratios of otoliths in the Pacific tarpon Megalops cyprinoides. The tarpons at the pre-metamorphic lep- tocephalus stage (SI) were collected in the estuary, marked with tetracycline and then reared for 18 and 30 d in 2 independent experiments with different temperatures (20, 25 and 30°C), salinities (0, 10 and 35) and feeding regimes (fed and starved)—environmental conditions that the fish may experi- ence in the wild. Temporal changes in Sr:Ca ratios from the primordium to the otolith edge of the reared tarpon were examined with an electron probe microanalyzer. At the optimal temperature (25°C) in Expt I, the leptocephalus completed metamorphosis (SII and SIII) after ca. 2 wk irrespective of being fed or starved and reared in low (10) or high (35) salinity, although both somatic and otolith growth rates were lower in starved than in fed groups. -
Marine Fish Conservation Global Evidence for the Effects of Selected Interventions
Marine Fish Conservation Global evidence for the effects of selected interventions Natasha Taylor, Leo J. Clarke, Khatija Alliji, Chris Barrett, Rosslyn McIntyre, Rebecca0 K. Smith & William J. Sutherland CONSERVATION EVIDENCE SERIES SYNOPSES Marine Fish Conservation Global evidence for the effects of selected interventions Natasha Taylor, Leo J. Clarke, Khatija Alliji, Chris Barrett, Rosslyn McIntyre, Rebecca K. Smith and William J. Sutherland Conservation Evidence Series Synopses 1 Copyright © 2021 William J. Sutherland This work is licensed under a Creative Commons Attribution 4.0 International license (CC BY 4.0). This license allows you to share, copy, distribute and transmit the work; to adapt the work and to make commercial use of the work providing attribution is made to the authors (but not in any way that suggests that they endorse you or your use of the work). Attribution should include the following information: Taylor, N., Clarke, L.J., Alliji, K., Barrett, C., McIntyre, R., Smith, R.K., and Sutherland, W.J. (2021) Marine Fish Conservation: Global Evidence for the Effects of Selected Interventions. Synopses of Conservation Evidence Series. University of Cambridge, Cambridge, UK. Further details about CC BY licenses are available at https://creativecommons.org/licenses/by/4.0/ Cover image: Circling fish in the waters of the Halmahera Sea (Pacific Ocean) off the Raja Ampat Islands, Indonesia, by Leslie Burkhalter. Digital material and resources associated with this synopsis are available at https://www.conservationevidence.com/ -
Skates and Rays Diversity, Exploration and Conservation – Case-Study of the Thornback Ray, Raja Clavata
UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL SKATES AND RAYS DIVERSITY, EXPLORATION AND CONSERVATION – CASE-STUDY OF THE THORNBACK RAY, RAJA CLAVATA Bárbara Marques Serra Pereira Doutoramento em Ciências do Mar 2010 UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL SKATES AND RAYS DIVERSITY, EXPLORATION AND CONSERVATION – CASE-STUDY OF THE THORNBACK RAY, RAJA CLAVATA Bárbara Marques Serra Pereira Tese orientada por Professor Auxiliar com Agregação Leonel Serrano Gordo e Investigadora Auxiliar Ivone Figueiredo Doutoramento em Ciências do Mar 2010 The research reported in this thesis was carried out at the Instituto de Investigação das Pescas e do Mar (IPIMAR - INRB), Unidade de Recursos Marinhos e Sustentabilidade. This research was funded by Fundação para a Ciência e a Tecnologia (FCT) through a PhD grant (SFRH/BD/23777/2005) and the research project EU Data Collection/DCR (PNAB). Skates and rays diversity, exploration and conservation | Table of Contents Table of Contents List of Figures ............................................................................................................................. i List of Tables ............................................................................................................................. v List of Abbreviations ............................................................................................................. viii Agradecimentos ........................................................................................................................ -
The Diet of Conger Conger (L
THE DIET OF CONGER CONGER (L. 1758) IN THE DEEP-WATERS OF EASTERN MEDITERRANEAN SEA Anastasopoulou A., Mytilineou Ch., Lefkaditou E., Kavadas S., Bekas P., Smith C.J., Papadopoulou K.N., Dogramatzi K. , Papastamou N. Inst. of Marine Biological Resources, Hellenic Centre for Marine Research, 46.7 km Athens-Sounio, Mavro Lithari P.O. BOX 712, 19013 Anavissos, Attica, Greece, [email protected] Abstract The diet of European conger eel Conger conger was investigated for the first time in the Eastern Ionian Sea from specimens collected during experimental bottom long line fishing. Sampling was carried out of Cephalonia Island in deep waters ranging from 300 to 855 m depth in summer and autumn 2010. European conger eel diet was dominated by Fish. Natantia and Brachyura Crustacea were identified as secondary preys, while Cephalopoda, Sipunculida and Isopoda represented accidental preys. C. conger exhibits a benthopelagic feeding behavior as it preys upon both demersal and mesopelagic taxa. The high values of Vacuity index and the low stomach and intestine fullness indicated that the feeding intensity of C. conger in the deep-water of Eastern Ionian Sea was quite low. Larger individuals showed more intense feeding activity and consume larger preys than smaller ones. However, no statistically significant differences were detected in the diet composition and feeding intensity of the species between seasons or size groups. Keywords: European conger eel, stomach analysis, intestine analysis, feeding, Ionian Sea. Η ΔΙΑΤΡΟΦΗ ΤΟΥ CONGER CONGER (L. 1758) ΣΤΑ ΒΑΘΙΑ ΝΕΡΑ ΤΗΣ ΑΝΑΤΟΛΙΚΗΣ ΜΕΣΟΓΕΙΟΥ ΘΑΛΑΣΣΑΣ Αναστασοπούλου Α., Μυτηλιναίου Χ., Λευκαδίτου Ε., Καβαδδάς Σ., Μπέκας Π., Smith C.J., Παπαδοπούλου Κ., Ντογραμματζή Κ., Παπαστάμου Ν. -
Fisheries Overview, Including Mixed-Fisheries Considerations
ICES Fisheries Overviews Bay of Biscay and Iberian Coast ecoregion Published 30 November 2020 Version 2: 3 December 2020 6.2 Bay of Biscay and Iberian Coast ecoregion – Fisheries overview, including mixed-fisheries considerations Table of contents Executive summary .................................................................................................................................................................. 1 Definition of the ecoregion ...................................................................................................................................................... 1 Mixed-fisheries considerations Bay of Biscay .......................................................................................................................... 2 Mixed-fisheries considerations Iberian waters ...................................................................................................................... 10 Who is fishing ........................................................................................................................................................................ 18 Catches over time .................................................................................................................................................................. 21 Description of the fisheries .................................................................................................................................................... 23 Fisheries management measures ......................................................................................................................................... -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Taste Preferences in Fish
FISH and FISHERIES, 2003, 4, 289^347 Taste preferences in ®sh Alexander O Kasumyan1 & Kjell B DÖving2 1Department of Ichthyology,Faculty of Biology,Moscow State University,119992 Moscow,Russia; 2Department of Biology, University of Oslo, N-0136 Oslo, Norway Abstract Correspondence: The ¢sh gustatory system provides the ¢nal sensory evaluation in the feeding process. Alexander O Unlike other vertebrates, the gustatory system in ¢sh may be divided into two distinct Kasumyan, Department of subsystems, oral and extraoral, both of them mediating behavioural responses to food Ichthyology,Faculty items brought incontact withthe ¢sh.The abundance of taste buds is anotherpeculiarity of Biology,Moscow of the ¢sh gustatory system. For many years, morphological and electrophysiological State University, techniques dominated the studies of the ¢sh gustatory system, and systematic investiga- 119992 Moscow, tions of ¢sh taste preferences have only been performed during the last 10 years. In the Russia E-mail: present review,basic principles in the taste preferences of ¢sh are formulated. Categories alex_kasumyan@ or types of taste substances are de¢ned in accordance with their e¡ects on ¢sh feeding mail.ru behaviour and further mediation by the oral or extraoral taste systems (incitants, sup- pressants, stimulants, deterrents, enhancers and indi¡erent substances). Information Received17July 2002 on taste preferences to di¡erent types of substances including classical taste substances, Accepted3April 2003 free amino acids, betaine, nucleotides, nucleosides, amines, sugars and other hydrocar- bons, organic acids, alcohols and aldehydes, and their mixtures, is summarised. The threshold concentrations for taste substances are discussed, and the relationship between ¢sh taste preferences with ¢sh systematic positionand ¢sh ecology is evaluated. -
Fao Species Catalogue
FAO Fisheries Synopsis No. 125, Volume 15 ISSN 0014-5602 FIR/S125 Vol. 15 FAO SPECIES CATALOGUE VOL. 15. SNAKE MACKERELS AND CUTLASSFISHES OF THE WORLD (FAMILIES GEMPYLIDAE AND TRICHIURIDAE) AN ANNOTATED AND ILLUSTRATED CATALOGUE OF THE SNAKE MACKERELS, SNOEKS, ESCOLARS, GEMFISHES, SACKFISHES, DOMINE, OILFISH, CUTLASSFISHES, SCABBARDFISHES, HAIRTAILS AND FROSTFISHES KNOWN TO DATE FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS FAO Fisheries Synopsis No. 125, Volume 15 FIR/S125 Vol. 15 FAO SPECIES CATALOGUE VOL. 15. SNAKE MACKERELS AND CUTLASSFISHES OF THE WORLD (Families Gempylidae and Trichiuridae) An Annotated and Illustrated Catalogue of the Snake Mackerels, Snoeks, Escolars, Gemfishes, Sackfishes, Domine, Oilfish, Cutlassfishes, Scabbardfishes, Hairtails, and Frostfishes Known to Date I. Nakamura Fisheries Research Station Kyoto University Maizuru, Kyoto, 625, Japan and N. V. Parin P.P. Shirshov Institute of Oceanology Academy of Sciences Krasikova 23 Moscow 117218, Russian Federation FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS Rome, 1993 The designations employed and the presenta- tion of material in this publication do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. M-40 ISBN 92-5-103124-X All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying or otherwise, without the prior permission of the copyright owner. Applications for such permission, with a statement of the purpose and extent of the reproduction, should be addressed to the Director, Publications Division, Food and Agriculture Organization of the United Nations, Via delle Terme di Caracalla, 00100 Rome, Italy.