Ichthyoplankton Distribution and Assemblage Within and Around the As Co River Plume Tracey Bauer University of New England
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Jennings Et Al., 2002)
1 Food Webs Archimer December 2017, Volume 13, Pages 33-37 http://dx.doi.org/10.1016/j.fooweb.2017.08.001 http://archimer.ifremer.fr http://archimer.ifremer.fr/doc/00395/50614/ © 2017 Published by Elsevier Inc. Investigating feeding ecology of two anglerfish species, Lophius piscatorius and Lophius budegassa in the Celtic Sea using gut content and isotopic analyses Issac Pierre 1, 2, Robert Marianne 2, Le Bris Hervé 1, Rault Jonathan 2, Pawlowski Lionel 2, Kopp Dorothee 2 1 ESE, Ecology and Ecosystem Health, Agrocampus Ouest, INRA, 35042, Rennes, France 2 Ifremer, Unité de Sciences et Technologies Halieutiques, Laboratoire de Technologie et Biologie Halieutique, 8 rue François Toullec, F-56100, Lorient, France Abstract : We used stable isotope ratio and gut content analyses to determine and compare the feeding ecology of two commercially important predator species, Lophius piscatorius and Lophius budegassa in the Celtic sea, where data concerning their trophic ecology remain sparse. This study included two areas and two size-classes, showing that anglerfish in the Celtic sea are mainly piscivorous top predators as observed in other marine waters. However, a substantial part of the diet of the fish in the small size classes consists of benthic macro-invertebrates, mainly Crustaceans. Despite the common knowledge that they are opportunistic predators that display a low degree of prey selectivity, our results suggest that the two species have different trophic niches when they occur in the same area. In the shallow area, both small and large individuals of L. budegassa seemed to prefer Crustacean prey, whereas L. piscatorius showed a clear shift from Crustaceans to fish prey with increasing size-class in the two areas. -
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Vol. 1: 117–132, 2015 SEXUALITY AND EARLY DEVELOPMENT IN AQUATIC ORGANISMS Published online June 11 doi: 10.3354/sedao00012 Sex Early Dev Aquat Org OPENPEN ACCESSCCESS Sexual development and maturity scale for the angel shark Squatina squatina (Elasmobranchii: Squatinidae), with comments on the adequacy of general maturity scales Filip Osaer1,2,3,*, Krupskaya Narváez1,2,3, José G. Pajuelo2, José M. Lorenzo2 1ELASMOCAN, Asociación Canaria para la Investigación y Conservación de los Elasmobranquios, 35001 Las Palmas de Gran Canaria, Spain 2Departamento de Biología, Universidad de Las Palmas de Gran Canaria, Edificio de Ciencias Básicas, Campus de Tafira, 35017 Las Palmas de Gran Canaria, Spain 3Fundación Colombiana para la Investigación y Conservación de Tiburones y Rayas, SQUALUS, Carrera 60A No 11−39, Cali, Colombia ABSTRACT: This paper contributes to the reproductive biology of the genus Squatina and aims to complement the criteria, uniformity and adaptable staging of sexual maturity scales for elasmo- branchs based on data from the angel shark S. squatina captured near the island of Gran Canaria (Canary Islands, Central-East Atlantic). Both sexes presented a paired reproductive tract with both sides active and asymmetric gonad development. Microscopic and macroscopic observations of the testes were consistent and indicated seasonality of spermatogenesis. The spermatocyst de - velopment pattern in mature individuals could not be assigned to any of the categories described in the literature. The ovaries−epigonal organ association was of the external type. Although all Squatinidae share a conservative morphology, they show differences across species in the func- tionality of the paired reproductive tract, seasonality of spermatogenesis, coiled spermatozoa and the presence of egg candles. -
The Osmoregulatory Metabolism Op the Starry Flounder, Platichthys Stellatus
THE OSMOREGULATORY METABOLISM OP THE STARRY FLOUNDER, PLATICHTHYS STELLATUS by CLEVELAND PENDLETON HICKMAN, JR. B.A., DePauw University, 1950 M.S., University of New Hampshire, 1953 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in the Department of Zoology We accept this thesis as conforming to the required standard. THE UNIVERSITY OF BRITISH COLUMBIA June, 1958 Faculty of Graduate Studies PROGRAMME OF THE FINAL ORAL EXAMINATION FOR THE DEGREE OF DOCTOR OF PHILOSOPHY of CLEVELAND PENDLETON HICKMAN JR. B.A. DePauw University, 1950 M.S. University of New Hampshire, 1953 IN ROOM 187A, BIOLOGICAL SCIENCES BUILDING MONDAY, JUNE 30, 1958 at 10:30 a.m. COMMITTEE IN CHARGE DEAN F. H. SOWARD, Chairman H. ADASKIN W. S. HOAR W. A. CLEMENS W. N. HOLMES I. McT. COWAN C. C. LINDSEY P. A. DEHNEL H. McLENNAN R. F. SCAGEL External Examiner: F. E. J. FRY University of Toronto THE OSMOREGULATORY METABOLISM OF THE STARRY FLOUNDER, PLATICHTYS STELLATUS ABSTRACT Energy demands for osmotic regulation and the possible osmoregulatory role of the thyroid gland were investigated in the euryhaline starry flounder, Platichthys stellatus. Using a melt• ing-point technique, it was established that flounder could regulate body fluid concentration independent of widely divergent environ• mental salinities. Small flounder experienced more rapid disturb• ances of body fluid concentration than large flounder after abrupt salinity alterations. The standard metabolic rate of flounder adapted to fresh water was consistently and significantly less than that of marine flounder. In supernormal salinities standard metabolic rate was significantly greater than in normal sea water. -
Zooplankton and Ichthyoplankton Distribution on the Southern Brazilian Shelf: an Overview
sm70n2189-2006 25/5/06 15:15 Página 189 SCIENTIA MARINA 70 (2) June 2006, 189-202, Barcelona (Spain) ISSN: 0214-8358 Zooplankton and ichthyoplankton distribution on the southern Brazilian shelf: an overview RUBENS M. LOPES1, MARIO KATSURAGAWA1, JUNE F. DIAS1, MONICA A. MONTÚ2(†), JOSÉ H. MUELBERT2, CHARLES GORRI2 and FREDERICO P. BRANDINI3 1 Oceanographic Institute, Dept. of Biological Oceanography, University of São Paulo, São Paulo, 05508-900, Brazil. E-mail: [email protected] 2 Federal University of Rio Grande, Rio Grande, 96201-900, Brazil. 3 Center for Marine Studies, Federal University of Paraná, Pontal do Paraná, 83255-000, Brazil. (†) Deceased SUMMARY: The southern Brazilian coast is the major fishery ground for the Brazilian sardine (Sardinella brasiliensis), a species responsible for up to 40% of marine fish catches in the region. Fish spawning and recruitment are locally influenced by seasonal advection of nutrient-rich waters from both inshore and offshore sources. Plankton communities are otherwise controlled by regenerative processes related to the oligotrophic nature of the Tropical Water from the Brazil Current. As recorded in other continental margins, zooplankton species diversity increases towards outer shelf and open ocean waters. Peaks of zooplankton biomass and ichthyoplankton abundance are frequent on the inner shelf, either at upwelling sites or off large estuarine systems. However, meandering features of the Brazil Current provide an additional mechanism of upward motion of the cold and nutrient-rich South Atlantic Central Water, increasing phyto- and zooplankton biomass and produc- tion on mid- and outer shelves. Cold neritic waters originating off Argentina, and subtropical waters from the Subtropical Convergence exert a strong seasonal influence on zooplankton and ichthyoplankton distribution towards more southern areas. -
Marine Fish Conservation Global Evidence for the Effects of Selected Interventions
Marine Fish Conservation Global evidence for the effects of selected interventions Natasha Taylor, Leo J. Clarke, Khatija Alliji, Chris Barrett, Rosslyn McIntyre, Rebecca0 K. Smith & William J. Sutherland CONSERVATION EVIDENCE SERIES SYNOPSES Marine Fish Conservation Global evidence for the effects of selected interventions Natasha Taylor, Leo J. Clarke, Khatija Alliji, Chris Barrett, Rosslyn McIntyre, Rebecca K. Smith and William J. Sutherland Conservation Evidence Series Synopses 1 Copyright © 2021 William J. Sutherland This work is licensed under a Creative Commons Attribution 4.0 International license (CC BY 4.0). This license allows you to share, copy, distribute and transmit the work; to adapt the work and to make commercial use of the work providing attribution is made to the authors (but not in any way that suggests that they endorse you or your use of the work). Attribution should include the following information: Taylor, N., Clarke, L.J., Alliji, K., Barrett, C., McIntyre, R., Smith, R.K., and Sutherland, W.J. (2021) Marine Fish Conservation: Global Evidence for the Effects of Selected Interventions. Synopses of Conservation Evidence Series. University of Cambridge, Cambridge, UK. Further details about CC BY licenses are available at https://creativecommons.org/licenses/by/4.0/ Cover image: Circling fish in the waters of the Halmahera Sea (Pacific Ocean) off the Raja Ampat Islands, Indonesia, by Leslie Burkhalter. Digital material and resources associated with this synopsis are available at https://www.conservationevidence.com/ -
Ecography ECOG-03961 Flanagan, P
Ecography ECOG-03961 Flanagan, P. H., Jensen, O. P., Morley, J. W. and Pinsky, M. L. 2019. Response of marine communities to local temperature changes. – Ecography doi: 10.1111/ ecog.03961 Supplementary material Appendix 1 2 3 4 5 6 Figure A1. Boxplots of annual survey sampling days per year in spring (a) and fall (b), bottom 7 temperature measurements per year in spring (c) and fall (d), and bottom temperatures per day of 8 year in spring (e) and fall (f) time series. Black bars indicate mean, gray boxes include 95% of 9 range, and whiskers include entire range of data points. 10 1 11 12 Figure A2. Histogram of Species Thermal Index values for the 246 demersal fish and invertebrate 13 species found in the Northeast U.S. Continental Shelf ecosystem and used in this study. 2 14 15 16 Figure A3. Maps of the difference in slopes of long-term trends (bottom temperature slope minus 17 CTI slope) in (a) spring and (b) fall strata. 3 18 19 Figure A4. Model II major axis linear regression between change in temperature-only model CTI 20 and change in observed CTI in spring (a) and fall (b) communities. Spring slope = 0.88, r2 = 21 0.066, P = 0.0223; fall slope = 0.465, r2 = 0.062, P = 0.026. 4 22 23 24 25 Figure A5. Pearson’s correlations between interannual values of bottom temperature or null 26 model CTI and observed CTI in each stratum and season. (a) Histogram of r values between 27 bottom temperature and observed CTI, with dashed line denoting mean (n = 160, mean r = 28 0.381). -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Comparison of an Active and a Passive Age-0 Fish Sampling Gear in a Tropical Reservoir
Comparison of an Active and a Passive Age-0 Fish Sampling Gear in a Tropical Reservoir M. Clint Lloyd, Department of Wildlife, Fisheries and Aquaculture, Mississippi State University, Box 9690 Mississippi State, MS 39762 J. Wesley Neal, Department of Wildlife, Fisheries and Aquaculture, Mississippi State University, Box 9690 Mississippi State, MS 39762 Abstract: Age-0 fish sampling is an important tool for predicting recruitment success and year-class strength of cohorts in fish populations. In Puerto Rico, limited research has been conducted on age-0 fish sampling with no studies addressing reservoir systems. In this study, we compared the efficacy of passively-fished light traps and actively-fished push nets for sampling the limnetic age-0 fish community in a tropical reservoir. Diversity of catch between push nets and light traps were similar, although species composition of catches differed between gears (pseudo-F = 32.21, df =1,23, P < 0.001) and among seasons (pseudo-F = 4.29, df = 3,23, P < 0.006). Push-net catches were dominated by threadfin shad (Dorosoma petenense), comprising 94.2% of total catch. Conversely, light traps collected primarily channel catfish Ictalurus( punctatus; 76.8%), with threadfin shad comprising only 13.8% of the sample. Light-trap catches had less species diversity and evenness compared to push nets, consequently their efficiency may be limited to presence/ absence of species. These two gears sampled different components of the age-0 fish community and therefore, gear selection should be based on- re search goals, with push nets an ideal gear for threadfin shad age-0 fish sampling, and light traps more appropriate for community sampling. -
Fish Passage Engineering Design Criteria 2019
FISH PASSAGE ENGINEERING DESIGN CRITERIA 2019 37.2’ U.S. Fish and Wildlife Service Northeast Region June 2019 Fish and Aquatic Conservation, Fish Passage Engineering Ecological Services, Conservation Planning Assistance United States Fish and Wildlife Service Region 5 FISH PASSAGE ENGINEERING DESIGN CRITERIA June 2019 This manual replaces all previous editions of the Fish Passage Engineering Design Criteria issued by the U.S. Fish and Wildlife Service Region 5 Suggested citation: USFWS (U.S. Fish and Wildlife Service). 2019. Fish Passage Engineering Design Criteria. USFWS, Northeast Region R5, Hadley, Massachusetts. USFWS R5 Fish Passage Engineering Design Criteria June 2019 USFWS R5 Fish Passage Engineering Design Criteria June 2019 Contents List of Figures ................................................................................................................................ ix List of Tables .................................................................................................................................. x List of Equations ............................................................................................................................ xi List of Appendices ........................................................................................................................ xii 1 Scope of this Document ....................................................................................................... 1-1 1.1 Role of the USFWS Region 5 Fish Passage Engineering ............................................ -
The Round Goby (Neogobius Melanostomus):A Review of European and North American Literature
ILLINOI S UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN PRODUCTION NOTE University of Illinois at Urbana-Champaign Library Large-scale Digitization Project, 2007. CI u/l Natural History Survey cF Library (/4(I) ILLINOIS NATURAL HISTORY OT TSrX O IJX6V E• The Round Goby (Neogobius melanostomus):A Review of European and North American Literature with notes from the Round Goby Conference, Chicago, 1996 Center for Aquatic Ecology J. Ei!en Marsden, Patrice Charlebois', Kirby Wolfe Illinois Natural History Survey and 'Illinois-Indiana Sea Grant Lake Michigan Biological Station 400 17th St., Zion IL 60099 David Jude University of Michigan, Great Lakes Research Division 3107 Institute of Science & Technology Ann Arbor MI 48109 and Svetlana Rudnicka Institute of Fisheries Varna, Bulgaria Illinois Natural History Survey Lake Michigan Biological Station 400 17th Sti Zion, Illinois 6 Aquatic Ecology Technical Report 96/10 The Round Goby (Neogobius melanostomus): A Review of European and North American Literature with Notes from the Round Goby Conference, Chicago, 1996 J. Ellen Marsden, Patrice Charlebois1, Kirby Wolfe Illinois Natural History Survey and 'Illinois-Indiana Sea Grant Lake Michigan Biological Station 400 17th St., Zion IL 60099 David Jude University of Michigan, Great Lakes Research Division 3107 Institute of Science & Technology Ann Arbor MI 48109 and Svetlana Rudnicka Institute of Fisheries Varna, Bulgaria The Round Goby Conference, held on Feb. 21-22, 1996, was sponsored by the Illinois-Indiana Sea Grant Program, and organized by the -
The Zebrafish Anatomy and Stage Ontologies: Representing the Anatomy and Development of Danio Rerio
Van Slyke et al. Journal of Biomedical Semantics 2014, 5:12 http://www.jbiomedsem.com/content/5/1/12 JOURNAL OF BIOMEDICAL SEMANTICS RESEARCH Open Access The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio Ceri E Van Slyke1*†, Yvonne M Bradford1*†, Monte Westerfield1,2 and Melissa A Haendel3 Abstract Background: The Zebrafish Anatomy Ontology (ZFA) is an OBO Foundry ontology that is used in conjunction with the Zebrafish Stage Ontology (ZFS) to describe the gross and cellular anatomy and development of the zebrafish, Danio rerio, from single cell zygote to adult. The zebrafish model organism database (ZFIN) uses the ZFA and ZFS to annotate phenotype and gene expression data from the primary literature and from contributed data sets. Results: The ZFA models anatomy and development with a subclass hierarchy, a partonomy, and a developmental hierarchy and with relationships to the ZFS that define the stages during which each anatomical entity exists. The ZFA and ZFS are developed utilizing OBO Foundry principles to ensure orthogonality, accessibility, and interoperability. The ZFA has 2860 classes representing a diversity of anatomical structures from different anatomical systems and from different stages of development. Conclusions: The ZFA describes zebrafish anatomy and development semantically for the purposes of annotating gene expression and anatomical phenotypes. The ontology and the data have been used by other resources to perform cross-species queries of gene expression and phenotype data, providing insights into genetic relationships, morphological evolution, and models of human disease. Background function, development, and evolution. ZFIN, the zebrafish Zebrafish (Danio rerio) share many anatomical and physio- model organism database [10] manually curates these dis- logical characteristics with other vertebrates, including parate data obtained from the literature or by direct data humans, and have emerged as a premiere organism to submission.