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The Holomorph of Parasarcopodium (Stachybotryaceae), Introducing P
Phytotaxa 266 (4): 250–260 ISSN 1179-3155 (print edition) http://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2016 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.266.4.2 The holomorph of Parasarcopodium (Stachybotryaceae), introducing P. pandanicola sp. nov. on Pandanus sp. SAOWALUCK TIBPROMMA1,2,3,4,5, SARANYAPHAT BOONMEE2, NALIN N. WIJAYAWARDENE2,3,5, SAJEEWA S.N. MAHARACHCHIKUMBURA6, ERIC H. C. McKENZIE7, ALI H. BAHKALI8, E.B. GARETH JONES8, KEVIN D. HYDE1,2,3,4,5,8 & ITTHAYAKORN PROMPUTTHA9,* 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kun- ming 650201, Yunnan, People’s Republic of China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4World Agroforestry Centre, East and Central Asia, Kunming 650201, Yunnan, P. R. China 5Mushroom Research Foundation, 128 M.3 Ban Pa Deng T. Pa Pae, A. Mae Taeng, Chiang Mai 50150, Thailand 6Department of Crop Sciences, College of Agricultural and Marine Sciences Sultan Qaboos University, P.O. Box 34, AlKhoud 123, Oman 7Manaaki Whenua Landcare Research, Private Bag 92170, Auckland, New Zealand 8Botany and Microbiology Department, College of Science, King Saud University, Riyadh, KSA 11442, Saudi Arabia 9Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, 50200, Thailand *Corresponding author: e-mail: [email protected] Abstract Collections of microfungi on Pandanus species (Pandanaceae) in Krabi, Thailand resulted in the discovery of a new species in the genus Parasarcopodium, producing both its sexual and asexual morphs. -
Metabolites from Nematophagous Fungi and Nematicidal Natural Products from Fungi As an Alternative for Biological Control
Appl Microbiol Biotechnol (2016) 100:3799–3812 DOI 10.1007/s00253-015-7233-6 MINI-REVIEW Metabolites from nematophagous fungi and nematicidal natural products from fungi as an alternative for biological control. Part I: metabolites from nematophagous ascomycetes Thomas Degenkolb1 & Andreas Vilcinskas1,2 Received: 4 October 2015 /Revised: 29 November 2015 /Accepted: 2 December 2015 /Published online: 29 December 2015 # The Author(s) 2015. This article is published with open access at Springerlink.com Abstract Plant-parasitic nematodes are estimated to cause Keywords Phytoparasitic nematodes . Nematicides . global annual losses of more than US$ 100 billion. The num- Oligosporon-type antibiotics . Nematophagous fungi . ber of registered nematicides has declined substantially over Secondary metabolites . Biocontrol the last 25 years due to concerns about their non-specific mechanisms of action and hence their potential toxicity and likelihood to cause environmental damage. Environmentally Introduction beneficial and inexpensive alternatives to chemicals, which do not affect vertebrates, crops, and other non-target organisms, Nematodes as economically important crop pests are therefore urgently required. Nematophagous fungi are nat- ural antagonists of nematode parasites, and these offer an eco- Among more than 26,000 known species of nematodes, 8000 physiological source of novel biocontrol strategies. In this first are parasites of vertebrates (Hugot et al. 2001), whereas 4100 section of a two-part review article, we discuss 83 nematicidal are parasites of plants, mostly soil-borne root pathogens and non-nematicidal primary and secondary metabolites (Nicol et al. 2011). Approximately 100 species in this latter found in nematophagous ascomycetes. Some of these sub- group are considered economically important phytoparasites stances exhibit nematicidal activities, namely oligosporon, of crops. -
(Hypocreales) Proposed for Acceptance Or Rejection
IMA FUNGUS · VOLUME 4 · no 1: 41–51 doi:10.5598/imafungus.2013.04.01.05 Genera in Bionectriaceae, Hypocreaceae, and Nectriaceae (Hypocreales) ARTICLE proposed for acceptance or rejection Amy Y. Rossman1, Keith A. Seifert2, Gary J. Samuels3, Andrew M. Minnis4, Hans-Josef Schroers5, Lorenzo Lombard6, Pedro W. Crous6, Kadri Põldmaa7, Paul F. Cannon8, Richard C. Summerbell9, David M. Geiser10, Wen-ying Zhuang11, Yuuri Hirooka12, Cesar Herrera13, Catalina Salgado-Salazar13, and Priscila Chaverri13 1Systematic Mycology & Microbiology Laboratory, USDA-ARS, Beltsville, Maryland 20705, USA; corresponding author e-mail: Amy.Rossman@ ars.usda.gov 2Biodiversity (Mycology), Eastern Cereal and Oilseed Research Centre, Agriculture & Agri-Food Canada, Ottawa, ON K1A 0C6, Canada 3321 Hedgehog Mt. Rd., Deering, NH 03244, USA 4Center for Forest Mycology Research, Northern Research Station, USDA-U.S. Forest Service, One Gifford Pincheot Dr., Madison, WI 53726, USA 5Agricultural Institute of Slovenia, Hacquetova 17, 1000 Ljubljana, Slovenia 6CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands 7Institute of Ecology and Earth Sciences and Natural History Museum, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia 8Jodrell Laboratory, Royal Botanic Gardens, Kew, Surrey TW9 3AB, UK 9Sporometrics, Inc., 219 Dufferin Street, Suite 20C, Toronto, Ontario, Canada M6K 1Y9 10Department of Plant Pathology and Environmental Microbiology, 121 Buckhout Laboratory, The Pennsylvania State University, University Park, PA 16802 USA 11State -
Sexual Morph of Furcasterigmium Furcatum (Plectosphaerellaceae) from Magnolia Liliifera Collected in Northern Thailand
Phyton-International Journal of Experimental Botany Tech Science Press DOI:10.32604/phyton.2020.09720 Article Sexual Morph of Furcasterigmium furcatum (Plectosphaerellaceae) from Magnolia liliifera Collected in Northern Thailand Jutamart Monkai1, Ruvishika S. Jayawardena1,2, Sajeewa S. N. Maharachchikumbura3,* and Kevin D. Hyde1 1Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 2School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 611731, China *Corresponding Author: Sajeewa S. N. Maharachchikumbura. Email: [email protected] Received: 16 January 2020; Accepted: 20 March 2020 Abstract: We isolated an interesting fungus from dead leaves of Magnolia liliifera collected from Chiang Mai, Thailand. The novel strain is related to Plectosphaer- ellaceae based on the morphology of its asexual morph and the analysis of sequence data. Phylogenetic analyses using a combined gene analysis of LSU and ITS sequence data showed that this strain is clustered in the same clade with Furcasterigmium furcatum with high statistical support. The new strains produced the asexual morph in culture which is morphologically similar to F. furcatum. Thus, we identified this strain as the sexual morph of F. furcatum. This is the first record of sexual morph for the monotypic genus Furcasterigmium and the first record of this genus on Magnolia. Keywords: Acremonium; phylogeny; sexual morph; sordariomycetes; taxonomy 1 Introduction The family Plectosphaerellaceae was introduce by Zare et al. [1], with the generic type Plectosphaerella [1,2]. Members in this family are found in diverse habitats, and most of them are soil-borne saprobes and plant pathogens [3–5]. -
AR TICLE Genera in Bionectriaceae, Hypocreaceae, and Nectriaceae
IMA FUNGUS · VOLUME 4 · NO 1: 41–51 doi:10.5598/imafungus.2013.04.01.05 Genera in Bionectriaceae, Hypocreaceae, and Nectriaceae (Hypocreales) ARTICLE proposed for acceptance or rejection Amy Y. Rossman1, Keith A. Seifert2, Gary J. Samuels3, Andrew M. Minnis4, Hans-Josef Schroers5, Lorenzo Lombard6, Pedro W. Crous6, Kadri Põldmaa7, Paul F. Cannon8, Richard C. Summerbell9, David M. Geiser10, Wen-ying Zhuang11, Yuuri Hirooka12, Cesar Herrera13, Catalina Salgado-Salazar13, and Priscila Chaverri13 1Systematic Mycology & Microbiology Laboratory, USDA-ARS, Beltsville, Maryland 20705, USA; corresponding author e-mail: Amy.Rossman@ ars.usda.gov 2Biodiversity (Mycology), Eastern Cereal and Oilseed Research Centre, Agriculture & Agri-Food Canada, Ottawa, ON K1A 0C6, Canada 3321 Hedgehog Mt. Rd., Deering, NH 03244, USA 4Center for Forest Mycology Research, Northern Research Station, USDA-U.S. Forest Service, One Gifford Pincheot Dr., Madison, WI 53726, USA 5Agricultural Institute of Slovenia, Hacquetova 17, 1000 Ljubljana, Slovenia 6CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands 7Institute of Ecology and Earth Sciences and Natural History Museum, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia 8Jodrell Laboratory, Royal Botanic Gardens, Kew, Surrey TW9 3AB, UK 9Sporometrics, Inc., 219 Dufferin Street, Suite 20C, Toronto, Ontario, Canada M6K 1Y9 10Department of Plant Pathology and Environmental Microbiology, 121 Buckhout Laboratory, The Pennsylvania State University, University Park, PA 16802 USA 11State -
An Overview of the Taxonomy, Phylogeny, and Typification of Nectriaceous Fungi in Cosmospora, Acremonium, Fusarium, Stilbella, and Volutella
available online at www.studiesinmycology.org StudieS in Mycology 68: 79–113. 2011. doi:10.3114/sim.2011.68.04 An overview of the taxonomy, phylogeny, and typification of nectriaceous fungi in Cosmospora, Acremonium, Fusarium, Stilbella, and Volutella T. Gräfenhan1, 4*, H.-J. Schroers2, H.I. Nirenberg3 and K.A. Seifert1 1Eastern Cereal and Oilseed Research Centre, Biodiversity (Mycology and Botany), 960 Carling Ave., Ottawa, Ontario, K1A 0C6, Canada; 2Agricultural Institute of Slovenia, 1000 Ljubljana, Slovenia; 3Julius-Kühn-Institute, Institute for Epidemiology and Pathogen Diagnostics, Königin-Luise-Str. 19, D-14195 Berlin, Germany; 4Current address: Grain Research Laboratory, Canadian Grain Commission, 1404-303 Main Street, Winnipeg, Manitoba, R3C 3G8, Canada *Correspondence: [email protected] Abstract: A comprehensive phylogenetic reassessment of the ascomycete genus Cosmospora (Hypocreales, Nectriaceae) is undertaken using fresh isolates and historical strains, sequences of two protein encoding genes, the second largest subunit of RNA polymerase II (rpb2), and a new phylogenetic marker, the larger subunit of ATP citrate lyase (acl1). The result is an extensive revision of taxonomic concepts, typification, and nomenclatural details of many anamorph- and teleomorph-typified genera of theNectriaceae, most notably Cosmospora and Fusarium. The combined phylogenetic analysis shows that the present concept of Fusarium is not monophyletic and that the genus divides into two large groups, one basal in the family, the other terminal, separated by a large group of species classified in genera such as Calonectria, Neonectria, and Volutella. All accepted genera received high statistical support in the phylogenetic analyses. Preliminary polythetic morphological descriptions are presented for each genus, providing details of perithecia, micro- and/or macro-conidial synanamorphs, cultural characters, and ecological traits. -
<I>Gliomastix</I> <I&G
MYCOTAXON Volume 111, pp. 95–102 January–March 2010 A new species of Hydropisphaera, H. bambusicola, is the sexual state of Gliomastix fusigera Christian Lechat1*, David F. Farr2, Yuuri Hirooka2, Andrew M. Minnis2 & Amy Y. Rossman2 1*[email protected] 64 route de Chizé, F-79360 Villiers en Bois, France 2Systematic Mycology & Microbiology Laboratory USDA-ARS, Rm. 304, B011A, 10300 Baltimore Avenue Beltsville, MD 20705, USA Abstract — Hydropisphaera bambusicola sp. nov. (Bionectriaceae, Hypocreales) is described and illustrated based on a collection from Bambusa vulgaris in Martinique. The asexual state was obtained in culture and identified asGliomastix fusigera. Gliomastix fusigera is an anamorphic species that occurs on members of the Arecaceae and Poaceae throughout the tropics and for which no sexual state is known. Hydropisphaera bambusicola is distinctive in having aseptate, striate ascospores. All other species of Hydropisphaera and most species of the Bionectriaceae have one or more septate ascospores. Hydropisphaera bambusicola and eight other species in Hydropisphaera are unusual in having fasciculate hairs near the perithecial apex. A key to the species of Hydropisphaera with hairs is presented. Key words — Acremonium, Ascomycota, bamboo, Ijuhya, Protocreopsis Introduction The genusHydropisphaera Dumort., based on the type species H. peziza (Tode) Dumort., was established by Dumortier (1822), but was long considered to be a synonym of the genus Nectria (Fr.) Fr. Rossman et al. (1999) resurrected Hydropisphaera as a distinct genus in the Bionectriaceae (Hypocreales) for species of Nectria-like fungi that had previously been placed in the N. peziza group (Booth 1959, Samuels 1976, Rossman 1983). The ascomata of Hydropisphaera are yellow, orange to brown, and do not change color in potassium hydroxide or lactic acid, which is characteristic of the Bionectriaceae. -
Lasionectriopsis, a New Genus in the Bionectriaceae, Based on the New Species L
Lasionectriopsis, a new genus in the Bionectriaceae, based on the new species L. germanica Christian LECHAT Abstract: Lasionectriopsis germanica gen. and sp. nov. is described and illustrated based on a collection from Pierre-Arthur MOREAU germany. The asexual morph of this fungus was obtained in culture and the culture was sequenced. The Hans BENDER genus is placed in the Bionectriaceae based on ascomata not changing colour in 3% KOH or lactic acid, and phylogenetic comparison of LSU sequences with species in 14 genera of the Bionectriaceae. Lasionectriopsis is primarily characterized by whitish to pale orange, globose ascomata, semi-immersed in a subiculum, and Ascomycete.org, 11 (1) : 1–4 verruculose ascospores. Based on molecular data, two species known only as asexual morphs, Acremonium Mise en ligne le 16/02/2019 pteridii and A. spinosum, are recombined in Lasionectriopsis. 10.25664/ART-0250 Keywords: acremonium-like, ascomycota, Hypocreales, ribosomal Dna, taxonomy. Résumé : Lasionectriopsis germanica gen. et sp. nov. est décrit et illustré d’après une récolte effectuée en al- lemagne. La forme asexuée de ce champignon a été obtenue en culture et cette dernière a été séquencée. Le genre est placé dans les Bionectriaceae d’après les ascomes ne changeant pas de couleur dans KOH à 3% ou dans l’acide lactique et la comparaison des séquences LSU avec des espèces représentant 14 genres de Bionectriaceae. Lasionectriopsis est caractérisé par des ascomes globuleux, semi-immergés dans un subicu- lum, blanchâtre à orange pâle et des ascospores verruculeuses. Deux espèces connues jusqu’à présent par leur seul stade asexué, Acremonium pteridii et A. -
AR TICLE Are Alkalitolerant Fungi of the Emericellopsis Lineage
IMA FUNGUS · VOLUME 4 · NO 2: 213–228 I#JKK$'LNJ#*JPJNJ Are alkalitolerant fungi of the Emericellopsis lineage (Bionectriaceae) of ARTICLE marine origin? ;6;`?`G14+`2, Alfons J.M. Debets1, and Elena N. Bilanenko3 1+ ` ~ " ` _ # J'~x @ |> ?I6G 2`|;;4"##$JN#4 3<x+4"_#?#N+`##$N*P4 Abstract: Surveying the fungi of alkaline soils in Siberia, Trans-Baikal regions (Russia), the Aral lake (Kazakhstan), Key words: and Eastern Mongolia, we report an abundance of alkalitolerant species representing the Emericellopsis-clade Acremonium within the Acremonium cluster of fungi (order Hypocreales). On an alkaline medium (pH ca. 10), 34 acremonium-like Emericellopsis 6 alkaline soils of the genus Emericellopsis, described here as E. alkalina sp. nov. Previous studies showed two distinct ecological molecular phylogeny clades within Emericellopsis, one consisting of terrestrial isolates and one predominantly marine. Remarkably, all pH tolerance 6+"_""_|;~xN soda soils @<#?!?@"@ ?[ in the Emericellopsis lineage. We tested the capacities of all newly isolated strains, and the few available reference 6?@ showed differences in growth rate as well as in pH preference. Whereas every newly isolated strain from soda soils 6PM##N reference marine-borne and terrestrial strains showed moderate and no alkalitolerance, respectively. The growth pattern of the alkalitolerant Emericellopsis6 unrelated alkaliphilic Sodiomyces alkalinus, obtained from the same type of soils but which showed a narrower preference towards high pH. Article info:"IN¤NJ#*>;IN*NJ#*>~IK|NJ#* INTRODUCTION such as high osmotic pressures, low water potentials, and, Æ$ @ Alkaline soils (or soda soils) and soda lakes represent a unique so-called alkaliphiles, with a growth optimum at pH above environmental niche. -
New Method for Identifying Fungal Kingdom Enzyme Hotspots from Genome Sequences
Journal of Fungi Article New Method for Identifying Fungal Kingdom Enzyme Hotspots from Genome Sequences Lene Lange 1, Kristian Barrett 2 and Anne S. Meyer 2,* 1 BioEconomy, Research & Advisory, Copenhagen, 2500 Valby, Denmark; [email protected] 2 Section for Protein Chemistry and Enzyme Technology, Department of Biotechnology and Biomedicine, Building 221, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark; [email protected] * Correspondence: [email protected]; Tel.: +45-4525-2600 Abstract: Fungal genome sequencing data represent an enormous pool of information for enzyme dis- covery. Here, we report a new approach to identify and quantitatively compare biomass-degrading capacity and diversity of fungal genomes via integrated function-family annotation of carbohydrate- active enzymes (CAZymes) encoded by the genomes. Based on analyses of 1932 fungal genomes the most potent hotspots of fungal biomass processing CAZymes are identified and ranked accord- ing to substrate degradation capacity. The analysis is achieved by a new bioinformatics approach, Conserved Unique Peptide Patterns (CUPP), providing for CAZyme-family annotation and robust prediction of molecular function followed by conversion of the CUPP output to lists of integrated “Function;Family” (e.g., EC 3.2.1.4;GH5) enzyme observations. An EC-function found in several pro- tein families counts as different observations. Summing up such observations allows for ranking of all analyzed genome sequenced fungal species according to richness in CAZyme function diversity and degrading capacity. Identifying fungal CAZyme hotspots provides for identification of fungal species richest in cellulolytic, xylanolytic, pectinolytic, and lignin modifying enzymes. The fungal enzyme Citation: Lange, L.; Barrett, K.; hotspots are found in fungi having very different lifestyle, ecology, physiology and substrate/host Meyer, A.S. -
(2004) the Diversity and Distribution of Microfungi in Leaf Litter of an Australian Wet Tropics Rainforest
ResearchOnline@JCU This file is part of the following reference: Paulus, Barbara Christine (2004) The diversity and distribution of microfungi in leaf litter of an Australian wet tropics rainforest. PhD thesis, James Cook University. Access to this file is available from: http://eprints.jcu.edu.au/1308/ If you believe that this work constitutes a copyright infringement, please contact [email protected] and quote http://eprints.jcu.edu.au/1308/ The Diversity and Distribution of Microfungi in Leaf Litter of an Australian Wet Tropics Rainforest Thesis submitted by Barbara Christine PAULUS BSc, MSc NZ in March 2004 for the degree of Doctor of Philosophy in the School of Biological Sciences James Cook University STATEMENT OF ACCESS I, the undersigned, author of this work, understand that James Cook University will make this thesis available for use within the University Library and, via the Australian Digital Theses network, for use elsewhere. I understand that, as an unpublished work, a thesis has significant protection under the Copyright Act and; I do not wish to place any further restriction on access to this work. The description of species in this thesis does not constitute valid form of publication. _________________________ ______________ Signature Date ii STATEMENT OF SOURCES DECLARATION I declare that this thesis is my own work and has not been submitted in any form for another degree or diploma at any university or other institution of tertiary education. Information derived from the published or unpublished work of others has been acknowledged in the text and a list of references is given. ____________________________________ ____________________ Signature Date iii STATEMENT ON THE CONTRIBUTION OF OTHERS In this section, a number of individuals and institutions are thanked for their direct contribution to this thesis. -
What Is the Fungal Diversity of Marine Ecosystems in Europe?
mycologist 20 (2006) 15– 21 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycol What is the Fungal Diversity of Marine Ecosystems in Europe? Eleanor T. LANDY*, Gerwyn M. JONES School of Biomedical and Molecular Sciences, University of Surrey, Guildford, Surrey, GU2 7XH, UK abstract Keywords: Diversity In 2001 the European Register of Marine Species 1.0 was published (Costello et al. 2001 and Europe http://erms.biol.soton.ac.uk/, and latterly: http://www.marbef.org/data/stats.php) [Costello Fungi MJ, Emblow C, White R, 2001. European register of marine species: a check list of the marine Marine species in Europe and a bibliography of guides to their identification. Collection Patrimoines Naturels 50, 463p.]. The lists of species (from fungi to mammals) were published as part of a European Union Concerted action project (funded by the European Union Marine Science and Technology (MAST) research programme) and the updated version (ERMS 2) is EU- funded through the Marine Biodiversity and Ecosystem Functioning (MARBEF) Framework project 6 Network of Excellence. Among these lists, a list of the fungi isolated and identified from coastal and marine ecosystems in Europe was included (Clipson et al. 2001) [Clipson NJW, Landy ET, Otte ML, 2001. Fungi. In@ Costelloe MJ, Emblow C, White R (eds), European register of marine species: a check-list of the marine species in Europe and a bibliography of guides to their identification. Collection Patrimoines Naturels 50: 15–19.]. This article deals with the results of compiling a new taxonomically correct and complete list of all fungi that have been reported occurring in European marine waters.