Segmentation Genes in the Fruitfly
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Francois Jacob Memorial
RETROSPECTIVE RETROSPECTIVE Francois Jacob memorial Arthur B. Pardee1 Department of Adult Oncology, Dana-Farber Institute, Boston, MA 02115 Dr. Francois Jacob is one of a handful of the DNA would integrate into the bacterial chro- 20th century’smostdistinguishedlifescien- mosome and remain dormant or, at other tists. His research with Dr. Jacques Monod, times, would kill the cell. like that of Watson and Crick, provided the Jacob’s next major contribution, in collab- foundations for understanding mechanisms oration with Dr. Jacques Monod, was to in- of genetic regulation of life processes such vestigate how a gene is regulated. Remark- as cell differentiation and defects in diseases. ably, native E. coli synthesize β-galactosidase Jacob joined the College de France in 1964 only when lactose is available. Some mutated and shared the Nobel Prize in Physiology bacteria can make the enzyme in the absence or Medicine 1965 with Jacques Monod of inducer. Monod’s initial idea was that and Andre Lwoff. He was elected to the these constitutive bacteria activate the gene National Academy of Sciences (NAS) USA by synthesizing an intracellular lactose-like in 1969. inducer molecule. Jacob was born in 1920 in a French Jewish To investigate this model, interrupted family; his grandfather was a four-star gen- mating was applied to bring the β-galactosi- eral. He began to study medicine before dase gene of a donor bacterium into a consti- World War II, in which he served as a mil- tutive receptor. According to the induction itary officer in the Free French Army and was model, the mated cell should produce en- badly wounded in an air raid. -
Quiet Debut'' of the Double Helix: a Bibliometric and Methodological
Journal of the History of Biology Ó Springer 2009 DOI 10.1007/s10739-009-9183-2 Revisiting the ‘‘Quiet Debut’’ of the Double Helix: A Bibliometric and Methodological note on the ‘‘Impact’’ of Scientific Publications YVES GINGRAS De´partement d’histoire Universite´ du Que´bec a` Montre´al C.P. 8888, Suc. Centre-Ville Montreal, QC H3C-3P8 Canada E-mail: [email protected] Abstract. The object of this paper is two-fold: first, to show that contrary to what seem to have become a widely accepted view among historians of biology, the famous 1953 first Nature paper of Watson and Crick on the structure of DNA was widely cited – as compared to the average paper of the time – on a continuous basis from the very year of its publication and over the period 1953–1970 and that the citations came from a wide array of scientific journals. A systematic analysis of the bibliometric data thus shows that Watson’s and Crick’s paper did in fact have immediate and long term impact if we define ‘‘impact’’ in terms of comparative citations with other papers of the time. In this precise sense it did not fall into ‘‘relative oblivion’’ in the scientific community. The second aim of this paper is to show, using the case of the reception of the Watson–Crick and Jacob–Monod papers as concrete examples, how large scale bibliometric data can be used in a sophisticated manner to provide information about the dynamic of the scientific field as a whole instead of limiting the analysis to a few major actors and generalizing the result to the whole community without further ado. -
MCDB 5220 Methods and Logics April 21 2015 Marcelo Bassalo
Cracking the Genetic Code MCDB 5220 Methods and Logics April 21 2015 Marcelo Bassalo The DNA Saga… so far Important contributions for cracking the genetic code: • The “transforming principle” (1928) Frederick Griffith The DNA Saga… so far Important contributions for cracking the genetic code: • The “transforming principle” (1928) • The nature of the transforming principle: DNA (1944 - 1952) Oswald Avery Alfred Hershey Martha Chase The DNA Saga… so far Important contributions for cracking the genetic code: • The “transforming principle” (1928) • The nature of the transforming principle: DNA (1944 - 1952) • X-ray diffraction and the structure of proteins (1951) Linus Carl Pauling The DNA Saga… so far Important contributions for cracking the genetic code: • The “transforming principle” (1928) • The nature of the transforming principle: DNA (1944 - 1952) • X-ray diffraction and the structure of proteins (1951) • The structure of DNA (1953) James Watson and Francis Crick The DNA Saga… so far Important contributions for cracking the genetic code: • The “transforming principle” (1928) • The nature of the transforming principle: DNA (1944 - 1952) • X-ray diffraction and the structure of proteins (1951) • The structure of DNA (1953) How is DNA (4 nucleotides) the genetic material while proteins (20 amino acids) are the building blocks? ? DNA Protein ? The Coding Craze ? DNA Protein What was already known? • DNA resides inside the nucleus - DNA is not the carrier • Protein synthesis occur in the cytoplasm through ribosomes {• Only RNA is associated with ribosomes (no DNA) - rRNA is not the carrier { • Ribosomal RNA (rRNA) was a homogeneous population The “messenger RNA” hypothesis François Jacob Jacques Monod The Coding Craze ? DNA RNA Protein RNA Tie Club Table from Wikipedia The Coding Craze Who won the race Marshall Nirenberg J. -
The Eighth Day of Creation”: Looking Back Across 40 Years to the Birth of Molecular Biology and the Roots of Modern Cell Biology
“The Eighth Day of Creation”: looking back across 40 years to the birth of molecular biology and the roots of modern cell biology Mark Peifer1 1 Department of Biology and Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, CB#3280, Chapel Hill, NC 27599-3280, USA * To whom correspondence should be addressed Email: [email protected] Phone: (919) 962-2272 1 Forty years ago, Horace Judson’s “The Eight Day of Creation” was published, a book vividly recounting the foundations of modern biology, the molecular biology revolution. This book inspired many in my generation. The anniversary provides a chance for a new generation to take a look back, to see how science has changed and hasn’t changed. Many central players in the book, including Sydney Brenner, Seymour Benzer and Francois Jacob, would go on to be among the founders of modern cell, developmental, and neurobiology. These players come alive via their own words, as complex individuals, both heroes and anti-heroes. The technologies and experimental approaches they pioneered, ranging from cell fractionation to immunoprecipitation to structural biology, and the multidisciplinary approaches they took continue to power and inspire our work today. In the process, Judson brings out of the shadows the central roles played by women in many of the era’s discoveries. He provides us with a vision of how science and scientists have changed, of how many things about our endeavor never change, and how some new ideas are perhaps not as new as we’d like to think. 2 In 1979 Horace Judson completed a ten-year project about cell and molecular biology’s foundations, unveiling “The Eighth Day of Creation”, a book I view as one of the most masterful evocations of a scientific revolution (Judson, 1979). -
Probabilistic Methods Surpass Parsimony When Assessing Clade Support in Phylogenetic Analyses of Discrete Morphological Data
O'Reilly, J., Puttick, M., Pisani, D., & Donoghue, P. (2017). Probabilistic methods surpass parsimony when assessing clade support in phylogenetic analyses of discrete morphological data. Palaeontology. https://doi.org/10.1111/pala.12330 Publisher's PDF, also known as Version of record License (if available): CC BY Link to published version (if available): 10.1111/pala.12330 Link to publication record in Explore Bristol Research PDF-document This is the final published version of the article (version of record). It first appeared online via Wiley at http://onlinelibrary.wiley.com/doi/10.1111/pala.12330/abstract. Please refer to any applicable terms of use of the publisher. University of Bristol - Explore Bristol Research General rights This document is made available in accordance with publisher policies. Please cite only the published version using the reference above. Full terms of use are available: http://www.bristol.ac.uk/red/research-policy/pure/user-guides/ebr-terms/ [Palaeontology, 2017, pp. 1–14] PROBABILISTIC METHODS SURPASS PARSIMONY WHEN ASSESSING CLADE SUPPORT IN PHYLOGENETIC ANALYSES OF DISCRETE MORPHOLOGICAL DATA by JOSEPH E. O’REILLY1 ,MARKN.PUTTICK1,2 , DAVIDE PISANI1,3 and PHILIP C. J. DONOGHUE1 1School of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol, BS8 1TQ, UK; [email protected]; [email protected]; [email protected]; [email protected] 2Department of Earth Sciences, The Natural History Museum, Cromwell Road, London, SW7 5BD, UK 3School of Biological Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol, BS8 1TQ, UK Typescript received 28 April 2017; accepted in revised form 13 September 2017 Abstract: Fossil taxa are critical to inferences of historical 50% support. -
In 1953 in England James Watson and Francis Crick Discovered the Structure of DNA in the Now-Famous Scientific Narrative Known As the “Race Towards the Double Helix”
THE NARRATIVES OF SCIENCE: LITERARY THEORY AND DISCOVERY IN MOLECULAR BIOLOGY PRIYA VENKATESAN In 1953 in England James Watson and Francis Crick discovered the structure of DNA in the now-famous scientific narrative known as the “race towards the double helix”. Meanwhile in France, Roland Barthes published his first book, Writing Degree Zero, on literary theory, which became the intellectual precursor for the new human sciences that were developing based on Saussurean linguistics. The discovery by Watson and Crick of the double helix marked a definitive turning point in the development of the life sciences, paving the way for the articulation of the genetic code and the emergence of molecular biology. The publication by Barthes was no less significant, since it served as an exemplar for elucidating how literary narratives are structured and for formulating how textual material is constructed. As Françoise Dosse notes, Writing Degree Zero “received unanimous acclaim and quickly became a symptom of new literary demands, a break with tradition”.1 Both the work of Roland Barthes and Watson and Crick served as paradigms in their respective fields. Semiotics, the field of textual analysis as developed by Barthes in Writing Degree Zero, offered a new direction in the structuring of narrative whereby each distinct unit in a story formed a “code” or “isotopy” that categorizes the formal elements of the story. The historical concurrence of the discovery of the double helix and the publication of Writing Degree Zero may be mere coincidence, but this essay is an exploration of the intellectual influence that both events may have had on each other, since both the discovery of the double helix and Barthes’ publication gave expression to the new forms of knowledge 1 Françoise Dosse, History of Structuralism: The Rising Sign, 1945-1966, trans. -
Aragonite Bias Exhibits Systematic Spatial Variation in the Late Cretaceous Western Interior Seaway, North America
Paleobiology, 45(4), 2019, pp. 571–597 DOI: 10.1017/pab.2019.33 Article Aragonite bias exhibits systematic spatial variation in the Late Cretaceous Western Interior Seaway, North America Christopher D. Dean , Peter A. Allison, Gary J. Hampson, and Jon Hill Abstract.—Preferential dissolution of the biogenic carbonate polymorph aragonite promotes preserva- tional bias in shelly marine faunas. While field studies have documented the impact of preferential aragon- ite dissolution on fossil molluscan diversity, its impact on regional and global biodiversity metrics is debated. Epicontinental seas are especially prone to conditions that both promote and inhibit preferential dissolution, which may result in spatially extensive zones with variable preservation. Here we present a multifaceted evaluation of aragonite dissolution within the Late Cretaceous Western Interior Seaway of North America. Occurrence data of mollusks from two time intervals (Cenomanian/Turonian boundary, early Campanian) are plotted on new high-resolution paleogeographies to assess aragonite preservation within the seaway. Fossil occurrences, diversity estimates, and sampling probabilities for calcitic and ara- gonitic fauna were compared in zones defined by depth and distance from the seaway margins. Apparent range sizes, which could be influenced by differential preservation potential of aragonite between separate localities, were also compared. Our results are consistent with exacerbated aragonite dissolution within specific depth zones for both time slices, with aragonitic bivalves additionally showing a statistically significant decrease in range size compared with calcitic fauna within carbonate-dominated Cenoma- nian–Turonian strata. However, we are unable to conclusively show that aragonite dissolution impacted diversity estimates. Therefore, while aragonite dissolution is likely to have affected the preservation of fauna in specific localities, time averaging and instantaneous preservation events preserve regional biodiversity. -
Cover June 2011
z NOBEL LAUREATES IN Qui DNA RESEARCH n u SANGRAM KESHARI LENKA & CHINMOYEE MAHARANA F 1. Who got the Nobel Prize in Physiology or Medicine 1933) for discovering the famous concept that says chromosomes carry genes? a. Gregor Johann Mendel b. Thomas Hunt Morgan c. Aristotle d. Charles Darwin 5. Name the Nobel laureate (1959) for his discovery of the mechanisms in the biological 2. The concept of Mutations synthesis of ribonucleic acid and are changes in genetic deoxyribonucleic acid? information” awarded him a. Arthur Kornberg b. Har Gobind Khorana the Nobel Prize in 1946: c. Roger D. Kornberg d. James D. Watson a. Hermann Muller b. M.F. Perutz c. James D. Watson 6. Discovery of the DNA double helix fetched them d. Har Gobind Khorana the Nobel Prize in Physiology or Medicine (1962). a. Francis Crick, James Watson, Rosalind Elsie Franklin b. Francis Crick, James Watson and Maurice Willkins c. James Watson, Maurice Willkins, Rosalind Elsie Franklin 3. Identify the discoverer and d. Maurice Willkins, Rosalind Elsie Franklin and Francis Crick Nobel laureate of 1958 who found DNA in bacteria and viruses. a. Louis Pasteur b. Alexander Fleming c. Joshua Lederberg d. Roger D. Kornberg 4. A direct link between genes and enzymatic reactions, known as the famous “one gene, one enzyme” hypothesis, was put forth by these 7. They developed the theory of genetic regulatory scientists who shared the Nobel Prize in mechanisms, showing how, on a molecular level, Physiology or Medicine, 1958. certain genes are activated and suppressed. Name a. George Wells Beadle and Edward Lawrie Tatum these famous Nobel laureates of 1965. -
Balcomk41251.Pdf (558.9Kb)
Copyright by Karen Suzanne Balcom 2005 The Dissertation Committee for Karen Suzanne Balcom Certifies that this is the approved version of the following dissertation: Discovery and Information Use Patterns of Nobel Laureates in Physiology or Medicine Committee: E. Glynn Harmon, Supervisor Julie Hallmark Billie Grace Herring James D. Legler Brooke E. Sheldon Discovery and Information Use Patterns of Nobel Laureates in Physiology or Medicine by Karen Suzanne Balcom, B.A., M.L.S. Dissertation Presented to the Faculty of the Graduate School of The University of Texas at Austin in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy The University of Texas at Austin August, 2005 Dedication I dedicate this dissertation to my first teachers: my father, George Sheldon Balcom, who passed away before this task was begun, and to my mother, Marian Dyer Balcom, who passed away before it was completed. I also dedicate it to my dissertation committee members: Drs. Billie Grace Herring, Brooke Sheldon, Julie Hallmark and to my supervisor, Dr. Glynn Harmon. They were all teachers, mentors, and friends who lifted me up when I was down. Acknowledgements I would first like to thank my committee: Julie Hallmark, Billie Grace Herring, Jim Legler, M.D., Brooke E. Sheldon, and Glynn Harmon for their encouragement, patience and support during the nine years that this investigation was a work in progress. I could not have had a better committee. They are my enduring friends and I hope I prove worthy of the faith they have always showed in me. I am grateful to Dr. -
Recent Advances and Unanswered Questions in Deep Molluscan Phylogenetics Author(S): Kevin M
Recent Advances and Unanswered Questions in Deep Molluscan Phylogenetics Author(s): Kevin M. Kocot Source: American Malacological Bulletin, 31(1):195-208. 2013. Published By: American Malacological Society DOI: http://dx.doi.org/10.4003/006.031.0112 URL: http://www.bioone.org/doi/full/10.4003/006.031.0112 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Amer. Malac. Bull. 31(1): 195–208 (2013) Recent advances and unanswered questions in deep molluscan phylogenetics* Kevin M. Kocot Auburn University, Department of Biological Sciences, 101 Rouse Life Sciences, Auburn University, Auburn, Alabama 36849, U.S.A. Correspondence, Kevin M. Kocot: [email protected] Abstract. Despite the diversity and importance of Mollusca, evolutionary relationships among the eight major lineages have been a longstanding unanswered question in Malacology. Early molecular studies of deep molluscan phylogeny, largely based on nuclear ribosomal gene data, as well as morphological cladistic analyses largely failed to provide robust hypotheses of relationships among major lineages. -
Alfred Henry Sturtevant
NATIONAL ACADEMY OF SCIENCES A LFRED HENRY S TURTEVANT 1891—1970 A Biographical Memoir by E D WA R D B . L E W IS Any opinions expressed in this memoir are those of the author(s) and do not necessarily reflect the views of the National Academy of Sciences. Biographical Memoir COPYRIGHT 1998 NATIONAL ACADEMIES PRESS WASHINGTON D.C. CourtesyoftheInstituteArchives,CaliforniaInstitueofTechnology,Pasadena ALFREDHENRYSTURTEVANT November21,1891—April5,1970 BYEDWARDB.LEWIS TURTEVANTWASTHEyoungestofsixchildrenofAlfred SHenrySturtevantandHarrietEvelynMorse.Hisgrand- fatherJulianM.SturtevantgraduatedfromYaleDivinity SchoolandwasafounderandlaterpresidentofIllinois College.Sturtevant’sfathertaughtmathematicsforatime atIllinoisCollegebutsubsequentlyturnedtofarming,first inIllinoisandlaterinsouthernAlabama,wherethefamily movedwhenSturtevantwasseven.Hisearlyeducationwas inAlabamainaone-roomcountryschool,butforthelast threeyearsofhighschoolhewenttoapublicschoolin Mobile. Inthefallof1908SturtevantenteredColumbiaUniver- sity.Thechoice,acrucialone,wasmadebecauseSturtevant’s oldestbrother,Edgar,wasthenteachingLatinandGreek atBarnardCollege;Edgarandhiswifemadeitpossible forSturtevanttoattendtheuniversitybytakinghiminto theirhome.SturtevantwasgreatlyinfluencedbyEdgar, fromwhomhelearnedtheaimsandstandardsofscholar- shipandresearch. AsaboySturtevanthaddrawnupthepedigreesofhis father’shorsesandofhisownfamily.Hepursuedthisinter- ReprintedwithpermissionfromDictionaryofScientificBiography,vol.13,pp.133-38. NewYork:Chas.Scribner’sSons,1976. 3 4 BIOGRAPHICALMEMOIRS -
Aragonite Bias Exhibits Systematic Spatial Variation in the Late Cretaceous Western Interior Seaway, North America
This is a repository copy of Aragonite bias exhibits systematic spatial variation in the late Cretaceous Western Interior Seaway, North America. White Rose Research Online URL for this paper: https://eprints.whiterose.ac.uk/150559/ Version: Accepted Version Article: Dean, Christopher, Allison, Peter A., Hampson, Gary et al. (1 more author) (2019) Aragonite bias exhibits systematic spatial variation in the late Cretaceous Western Interior Seaway, North America. Paleobiology. ISSN 1938-5331 https://doi.org/10.1017/pab.2019.33 Reuse Items deposited in White Rose Research Online are protected by copyright, with all rights reserved unless indicated otherwise. They may be downloaded and/or printed for private study, or other acts as permitted by national copyright laws. The publisher or other rights holders may allow further reproduction and re-use of the full text version. This is indicated by the licence information on the White Rose Research Online record for the item. Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ Paleobiology For Peer Review Aragonite bias exhibits systematic spatial variation in the late Cretaceous Western Interior Seaway, North America Journal: Paleobiology Manuscript ID PAB-OR-2019-0021.R2 Manuscript Type: Article Date Submitted by the n/a Author: Complete List of Authors: Dean, Christopher; Imperial