The Genus Stephanospora Pat., Two New Combinations
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Major Clades of Agaricales: a Multilocus Phylogenetic Overview
Mycologia, 98(6), 2006, pp. 982–995. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 Major clades of Agaricales: a multilocus phylogenetic overview P. Brandon Matheny1 Duur K. Aanen Judd M. Curtis Laboratory of Genetics, Arboretumlaan 4, 6703 BD, Biology Department, Clark University, 950 Main Street, Wageningen, The Netherlands Worcester, Massachusetts, 01610 Matthew DeNitis Vale´rie Hofstetter 127 Harrington Way, Worcester, Massachusetts 01604 Department of Biology, Box 90338, Duke University, Durham, North Carolina 27708 Graciela M. Daniele Instituto Multidisciplinario de Biologı´a Vegetal, M. Catherine Aime CONICET-Universidad Nacional de Co´rdoba, Casilla USDA-ARS, Systematic Botany and Mycology de Correo 495, 5000 Co´rdoba, Argentina Laboratory, Room 304, Building 011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350 Dennis E. Desjardin Department of Biology, San Francisco State University, Jean-Marc Moncalvo San Francisco, California 94132 Centre for Biodiversity and Conservation Biology, Royal Ontario Museum and Department of Botany, University Bradley R. Kropp of Toronto, Toronto, Ontario, M5S 2C6 Canada Department of Biology, Utah State University, Logan, Utah 84322 Zai-Wei Ge Zhu-Liang Yang Lorelei L. Norvell Kunming Institute of Botany, Chinese Academy of Pacific Northwest Mycology Service, 6720 NW Skyline Sciences, Kunming 650204, P.R. China Boulevard, Portland, Oregon 97229-1309 Jason C. Slot Andrew Parker Biology Department, Clark University, 950 Main Street, 127 Raven Way, Metaline Falls, Washington 99153- Worcester, Massachusetts, 01609 9720 Joseph F. Ammirati Else C. Vellinga University of Washington, Biology Department, Box Department of Plant and Microbial Biology, 111 355325, Seattle, Washington 98195 Koshland Hall, University of California, Berkeley, California 94720-3102 Timothy J. -
Biodiversity of Wood-Decay Fungi in Italy
AperTO - Archivio Istituzionale Open Access dell'Università di Torino Biodiversity of wood-decay fungi in Italy This is the author's manuscript Original Citation: Availability: This version is available http://hdl.handle.net/2318/88396 since 2016-10-06T16:54:39Z Published version: DOI:10.1080/11263504.2011.633114 Terms of use: Open Access Anyone can freely access the full text of works made available as "Open Access". Works made available under a Creative Commons license can be used according to the terms and conditions of said license. Use of all other works requires consent of the right holder (author or publisher) if not exempted from copyright protection by the applicable law. (Article begins on next page) 28 September 2021 This is the author's final version of the contribution published as: A. Saitta; A. Bernicchia; S.P. Gorjón; E. Altobelli; V.M. Granito; C. Losi; D. Lunghini; O. Maggi; G. Medardi; F. Padovan; L. Pecoraro; A. Vizzini; A.M. Persiani. Biodiversity of wood-decay fungi in Italy. PLANT BIOSYSTEMS. 145(4) pp: 958-968. DOI: 10.1080/11263504.2011.633114 The publisher's version is available at: http://www.tandfonline.com/doi/abs/10.1080/11263504.2011.633114 When citing, please refer to the published version. Link to this full text: http://hdl.handle.net/2318/88396 This full text was downloaded from iris - AperTO: https://iris.unito.it/ iris - AperTO University of Turin’s Institutional Research Information System and Open Access Institutional Repository Biodiversity of wood-decay fungi in Italy A. Saitta , A. Bernicchia , S. P. Gorjón , E. -
Boletus Edulis and Cistus Ladanifer: Characterization of Its Ectomycorrhizae, in Vitro Synthesis, and Realised Niche
UNIVERSIDAD DE MURCIA ESCUELA INTERNACIONAL DE DOCTORADO Boletus edulis and Cistus ladanifer: characterization of its ectomycorrhizae, in vitro synthesis, and realised niche. Boletus edulis y Cistus ladanifer: caracterización de sus ectomicorrizas, síntesis in vitro y área potencial. Dª. Beatriz Águeda Hernández 2014 UNIVERSIDAD DE MURCIA ESCUELA INTERNACIONAL DE DOCTORADO Boletus edulis AND Cistus ladanifer: CHARACTERIZATION OF ITS ECTOMYCORRHIZAE, in vitro SYNTHESIS, AND REALISED NICHE tesis doctoral BEATRIZ ÁGUEDA HERNÁNDEZ Memoria presentada para la obtención del grado de Doctor por la Universidad de Murcia: Dra. Luz Marina Fernández Toirán Directora, Universidad de Valladolid Dra. Asunción Morte Gómez Tutora, Universidad de Murcia 2014 Dª. Luz Marina Fernández Toirán, Profesora Contratada Doctora de la Universidad de Valladolid, como Directora, y Dª. Asunción Morte Gómez, Profesora Titular de la Universidad de Murcia, como Tutora, AUTORIZAN: La presentación de la Tesis Doctoral titulada: ‘Boletus edulis and Cistus ladanifer: characterization of its ectomycorrhizae, in vitro synthesis, and realised niche’, realizada por Dª Beatriz Águeda Hernández, bajo nuestra inmediata dirección y supervisión, y que presenta para la obtención del grado de Doctor por la Universidad de Murcia. En Murcia, a 31 de julio de 2014 Dra. Luz Marina Fernández Toirán Dra. Asunción Morte Gómez Área de Botánica. Departamento de Biología Vegetal Campus Universitario de Espinardo. 30100 Murcia T. 868 887 007 – www.um.es/web/biologia-vegetal Not everything that can be counted counts, and not everything that counts can be counted. Albert Einstein Le petit prince, alors, ne put contenir son admiration: -Que vous êtes belle! -N´est-ce pas, répondit doucement la fleur. Et je suis née meme temps que le soleil.. -
Chapter 1. Introduction
Chapter 1: Introduction Chapter 1. Introduction Research and ecological context Importance of the mutualistic symbiosis Truffle-like fungi are an important component in many terrestrial ecosystems. They provide a food resource for mycophagous (‘fungus-eating’) animals and are an essential symbiont for many plant species (Claridge 2002; Brundrett 2009). Most truffle-like fungi are considered ectomycorrhizal (EcM) in which the fungus hyphae penetrate the plant root structure and form a sheath (‘Hartig Net’) around plant root tips. This enables the exchange of water, minerals, and metabolites between fungus and plant (Nehls et al. 2010). The fungus can form extensive networks of mycelium in the soil extending the effective surface of the plant-host root system. EcM fungi can also confer resistance to parasites, predators, pathogens, and heavy-metal pollution, as well as the breakdown of inorganic substrates (Claridge 2002; Gadd 2007; Bonfante & Genre 2010). EcM fungi can reproduce through mycelia (vegetative) growth or through spores. Truffle-like EcM fungi form reproductive below-ground (hypogeous) fruit-bodies (sporocarps) in which spores are entirely or partly enclosed within fungal tissue of the sporocarp (‘sequestrate’), and often referred to as ‘truffles’. The sporocarps of these fungi (‘truffles’) generally require excavation and consumption by mycophagous mammals for spores to be liberated and dispersed to new locations (Johnson 1996; Bougher & Lebel 2001). In contrast, epigeous or ‘mushroom-like’ fungi produce stipitate above-ground sporocarps in which spores are not enclosed within fungal tissue and are actively or passively discharged into the surrounding environment. Consequently, truffle-like taxa are considered to have evolved to be reliant on mycophagous animals for their dispersal. -
Re-Thinking the Classification of Corticioid Fungi
mycological research 111 (2007) 1040–1063 journal homepage: www.elsevier.com/locate/mycres Re-thinking the classification of corticioid fungi Karl-Henrik LARSSON Go¨teborg University, Department of Plant and Environmental Sciences, Box 461, SE 405 30 Go¨teborg, Sweden article info abstract Article history: Corticioid fungi are basidiomycetes with effused basidiomata, a smooth, merulioid or Received 30 November 2005 hydnoid hymenophore, and holobasidia. These fungi used to be classified as a single Received in revised form family, Corticiaceae, but molecular phylogenetic analyses have shown that corticioid fungi 29 June 2007 are distributed among all major clades within Agaricomycetes. There is a relative consensus Accepted 7 August 2007 concerning the higher order classification of basidiomycetes down to order. This paper Published online 16 August 2007 presents a phylogenetic classification for corticioid fungi at the family level. Fifty putative Corresponding Editor: families were identified from published phylogenies and preliminary analyses of unpub- Scott LaGreca lished sequence data. A dataset with 178 terminal taxa was compiled and subjected to phy- logenetic analyses using MP and Bayesian inference. From the analyses, 41 strongly Keywords: supported and three unsupported clades were identified. These clades are treated as fam- Agaricomycetes ilies in a Linnean hierarchical classification and each family is briefly described. Three ad- Basidiomycota ditional families not covered by the phylogenetic analyses are also included in the Molecular systematics classification. All accepted corticioid genera are either referred to one of the families or Phylogeny listed as incertae sedis. Taxonomy ª 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved. Introduction develop a downward-facing basidioma. -
Stephanosporaceae, Agaricales), a Novel Sequestrate Truffle from North America
Revista Mexicana de Micología vol. 41: 73-77 2015 Stephanospora michoacanensis (Stephanosporaceae, Agaricales), a novel sequestrate truffle from North America Stephanospora michoacanensis (Stephanosporaceae, Agaricales), una nueva trufa encontrada en América del Norte Gonzalo Guevara-Guerrero1, Ivone Báez-Alvarado1, Víctor M. Gómez-Reyes2, Michael A. Castellano3 1. Instituto Tecnológico de Cd. Victoria, Av. Portes Gil 1301 Pte., Cd. Victoria, Tamaulias, 87010, México. 2. Universidad Michoacana, Facultad de Biología, San Nicolás de Hidalgo, Morelia, Michoacán, México.3. U.S. Department of Agriculture, Forest Service, Northern Research Station, 3200 Jefferson Way, Corvallis, Oregon, 97331 USA. ABSTraCT Stephanospora michoacanensis is presented as a new species from North America. This angiocarpic species is recognized by its yellow- cream peridial surface color and broadly ellipsoid to subglobose, spiny or crested, inamyloid spores with a distinct, complete or nearly complete corona at its base. Stephanospora michoacanensis is similar to S. caroticolor, but S. caroticolor has a bright yellow to reddish yellow peridial surface, and larger spores. Stephanospora michoacanensis also resembles S. chilensis, but S. chilensis has a brownish- ochraceous to reddish orange peridial surface, spiny spores that lack crest-like features. Illustrations of macro-and microscopic features are presented. KEYWORDS: truffles, hypogeous, carrot-red truffles, sequestrate,Lindtneria . RESUMEN Se presenta Stephanospora michoacanensis como una nueva especie de América del Norte. Esta especie angiocárpica se reconoce por el color amarillo crema del peridio, las esporas subglobosas a globosas, con espinas o crestas inamiloides, y con una corona distintiva completa o casi completa en su base. Stephanospora michoacanensis es similar a S. caroticolor, pero esta última tiene un color amarillo brillante a amarillo rojizo en la superficie del peridio y basidiosporas más grandes.Stephanospora michoacanensis también se parece a S. -
AR TICLE New Sequestrate Fungi from Guyana: Jimtrappea Guyanensis
IMA FUNGUS · 6(2): 297–317 (2015) doi:10.5598/imafungus.2015.06.02.03 New sequestrate fungi from Guyana: Jimtrappea guyanensis gen. sp. nov., ARTICLE Castellanea pakaraimophila gen. sp. nov., and Costatisporus cyanescens gen. sp. nov. (Boletaceae, Boletales) Matthew E. Smith1, Kevin R. Amses2, Todd F. Elliott3, Keisuke Obase1, M. Catherine Aime4, and Terry W. Henkel2 1Department of Plant Pathology, University of Florida, Gainesville, FL 32611, USA 2Department of Biological Sciences, Humboldt State University, Arcata, CA 95521, USA; corresponding author email: Terry.Henkel@humboldt. edu 3Department of Integrative Studies, Warren Wilson College, Asheville, NC 28815, USA 4Department of Botany & Plant Pathology, Purdue University, West Lafayette, IN 47907, USA Abstract: Jimtrappea guyanensis gen. sp. nov., Castellanea pakaraimophila gen. sp. nov., and Costatisporus Key words: cyanescens gen. sp. nov. are described as new to science. These sequestrate, hypogeous fungi were collected Boletineae in Guyana under closed canopy tropical forests in association with ectomycorrhizal (ECM) host tree genera Caesalpinioideae Dicymbe (Fabaceae subfam. Caesalpinioideae), Aldina (Fabaceae subfam. Papilionoideae), and Pakaraimaea Dipterocarpaceae (Dipterocarpaceae). Molecular data place these fungi in Boletaceae (Boletales, Agaricomycetes, Basidiomycota) ectomycorrhizal fungi and inform their relationships to other known epigeous and sequestrate taxa within that family. Macro- and gasteroid fungi micromorphological characters, habitat, and multi-locus DNA sequence data are provided for each new taxon. Guiana Shield Unique morphological features and a molecular phylogenetic analysis of 185 taxa across the order Boletales justify the recognition of the three new genera. Article info: Submitted: 31 May 2015; Accepted: 19 September 2015; Published: 2 October 2015. INTRODUCTION 2010, Gube & Dorfelt 2012, Lebel & Syme 2012, Ge & Smith 2013). -
Polypore Diversity in North America with an Annotated Checklist
Mycol Progress (2016) 15:771–790 DOI 10.1007/s11557-016-1207-7 ORIGINAL ARTICLE Polypore diversity in North America with an annotated checklist Li-Wei Zhou1 & Karen K. Nakasone2 & Harold H. Burdsall Jr.2 & James Ginns3 & Josef Vlasák4 & Otto Miettinen5 & Viacheslav Spirin5 & Tuomo Niemelä 5 & Hai-Sheng Yuan1 & Shuang-Hui He6 & Bao-Kai Cui6 & Jia-Hui Xing6 & Yu-Cheng Dai6 Received: 20 May 2016 /Accepted: 9 June 2016 /Published online: 30 June 2016 # German Mycological Society and Springer-Verlag Berlin Heidelberg 2016 Abstract Profound changes to the taxonomy and classifica- 11 orders, while six other species from three genera have tion of polypores have occurred since the advent of molecular uncertain taxonomic position at the order level. Three orders, phylogenetics in the 1990s. The last major monograph of viz. Polyporales, Hymenochaetales and Russulales, accom- North American polypores was published by Gilbertson and modate most of polypore species (93.7 %) and genera Ryvarden in 1986–1987. In the intervening 30 years, new (88.8 %). We hope that this updated checklist will inspire species, new combinations, and new records of polypores future studies in the polypore mycota of North America and were reported from North America. As a result, an updated contribute to the diversity and systematics of polypores checklist of North American polypores is needed to reflect the worldwide. polypore diversity in there. We recognize 492 species of polypores from 146 genera in North America. Of these, 232 Keywords Basidiomycota . Phylogeny . Taxonomy . species are unchanged from Gilbertson and Ryvarden’smono- Wood-decaying fungus graph, and 175 species required name or authority changes. -
Four Species of Polyporoid Fungi Newly Recorded from Taiwan
MYCOTAXON ISSN (print) 0093-4666 (online) 2154-8889 Mycotaxon, Ltd. ©2018 January–March 2018—Volume 133, pp. 45–54 https://doi.org/10.5248/133.45 Four species of polyporoid fungi newly recorded from Taiwan Che-Chih Chen1, Sheng-Hua Wu1,2*, Chi-Yu Chen1 1 Department of Plant Pathology, National Chung Hsing University, Taichung 40227 Taiwan 2 Department of Biology, National Museum of Natural Science, Taichung 40419 Taiwan * Correspondence to: [email protected] Abstract —Four wood-rotting polypores are reported from Taiwan for the first time: Ceriporiopsis pseudogilvescens, Megasporia major, Phlebiopsis castanea, and Trametes maxima. ITS (internal transcribed spacer) sequences were obtained from each specimen to confirm the determinations. Key words—aphyllophoroid fungi, fungal biodiversity, DNA barcoding, fungal cultures, ITS rDNA Introduction Polypores are a large group of Basidiomycota with poroid hymenophores on the underside of fruiting bodies, which may be pileate, resupinate, or effused-reflexed, and with textures that are typically corky, leathery, tough, or even woody hard (Härkönen & al. 2015). Formerly, polypores were treated mostly in Polyporaceae Corda s.l. (under Polyporales) and Hymenochaetaceae Imazeki & Toki s.l. (under Hymenochaetales), with some species in Corticiaceae Herter s.l. (Gilbertson & Ryvarden 1986, 1987; Ryvarden & Melo 2014). However, modern DNA-based phylogenetic studies distribute polyporoid genera across at least 12 orders of Agaricomycetes Doweld, e.g., Polyporales Gäum., Hymenochaetales Oberw., Russulales Kreisel ex P.M. Kirk & al., Agaricales Underw. (Hibbett & al. 2007, Zhao & al. 2015). 46 ... Chen & al. Most polypores are wood-rotters that decompose the cellulose, hemicellulose, or lignin of woody biomass in forests; these fungi are either saprobes on trees, stumps, and fallen branches or parasites on living tree trunks or roots and therefore play a crucial role in nutrient recycling for the earth (Härkönen & al. -
Underground Friends • Mainly Ascomycota & Basidiomycota • Ectomycorrhiza Mikael Jeppson • Dispersal with Animals August 2019
14/08/2019 What is a truffel? • Hypogeous fruitbody • Gastroid, sequestrate Underground friends • Mainly Ascomycota & Basidiomycota • Ectomycorrhiza Mikael Jeppson • Dispersal with animals August 2019 Evolution Taxonomy epigeous hypogeous • Basidiomycota • Boletales - Rhizopogon, Alpova, Melanogaster, Chamonixia, Octaviania agaricoid/discoid gastroid • Russulales – Macowanites/Elasmomyces/Arcangeliella → Russula & Lactarius Ballistospores statismospores • Agaricales – Hymenogaster, Hydnangium, Stephanospora • Gomphales – Gautieria Explosive asci non-explosive asci • Phallales – Hysterangium • Geastrales - Sclerogaster • Ascomycota • Pezizales – Tuber, Balsamia, Genea, Hydnotrya, Choiromyces, Hydnobolites, Pachyphlodes, Stephensia • Eurotiales - Elaphomyces 1 14/08/2019 From agaricoid/boletoid to gastroid sequestrate gastroid Hypogeous basidiomycota Chamonixia caespitosa - blåtryffel Genera & species • Boletales overview • Mycorrhiza with Picea • A species with Action plan • Red-listed as VU • In old-growth Picea-forests A snapshot of the current state of knowledge Photo A. Bohlin 2 14/08/2019 Rhizopogon - hartryfflar • Boletales • Dyntaxa: 9 species in Sweden • Ectomycorrhiza with Pinaceae • 2 abundant species: luteolus (gulbrun) och luteolus Roseolus - rubescens roseolus (rodnande – a species complex) • 7+ with only scattered records in Sweden and/or Europé • Monographic treatment based on morphology (Martín 1996) abietis Structure of peridiepellis Boletales tree (collections 2011) AM49_Me la no_ITS _LS U AM97_Melano_ITS_LSU_NB AM80_Melano_ITS_LSU_NB -
Sequencing Abstracts Msa Annual Meeting Berkeley, California 7-11 August 2016
M S A 2 0 1 6 SEQUENCING ABSTRACTS MSA ANNUAL MEETING BERKELEY, CALIFORNIA 7-11 AUGUST 2016 MSA Special Addresses Presidential Address Kerry O’Donnell MSA President 2015–2016 Who do you love? Karling Lecture Arturo Casadevall Johns Hopkins Bloomberg School of Public Health Thoughts on virulence, melanin and the rise of mammals Workshops Nomenclature UNITE Student Workshop on Professional Development Abstracts for Symposia, Contributed formats for downloading and using locally or in a Talks, and Poster Sessions arranged by range of applications (e.g. QIIME, Mothur, SCATA). 4. Analysis tools - UNITE provides variety of analysis last name of primary author. Presenting tools including, for example, massBLASTer for author in *bold. blasting hundreds of sequences in one batch, ITSx for detecting and extracting ITS1 and ITS2 regions of ITS 1. UNITE - Unified system for the DNA based sequences from environmental communities, or fungal species linked to the classification ATOSH for assigning your unknown sequences to *Abarenkov, Kessy (1), Kõljalg, Urmas (1,2), SHs. 5. Custom search functions and unique views to Nilsson, R. Henrik (3), Taylor, Andy F. S. (4), fungal barcode sequences - these include extended Larsson, Karl-Hnerik (5), UNITE Community (6) search filters (e.g. source, locality, habitat, traits) for 1.Natural History Museum, University of Tartu, sequences and SHs, interactive maps and graphs, and Vanemuise 46, Tartu 51014; 2.Institute of Ecology views to the largest unidentified sequence clusters and Earth Sciences, University of Tartu, Lai 40, Tartu formed by sequences from multiple independent 51005, Estonia; 3.Department of Biological and ecological studies, and for which no metadata Environmental Sciences, University of Gothenburg, currently exists. -
Sequestrate Fungi from Patagonian Nothofagus Forests: Cystangium (Russulaceae, Basidiomycota)
Sequestrate fungi from Patagonian Nothofagus forests: Cystangium (Russulaceae, Basidiomycota) Trierveiler-Pereira, L., Smith, M. E., Trappe, J. M., & Nouhra, E. R. (2015). Sequestrate fungi from Patagonian Nothofagus forests: Cystangium (Russulaceae, Basidiomycota). Mycologia, 107(1), 90-103. doi:10.3852/13-302 10.3852/13-302 Allen Press Inc. Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Mycologia, 107(1), 2015, pp. 90–103. DOI: 10.3852/13-302 # 2015 by The Mycological Society of America, Lawrence, KS 66044-8897 Sequestrate fungi from Patagonian Nothofagus forests: Cystangium (Russulaceae, Basidiomycota) Larissa Trierveiler-Pereira1 Ectomycorrhizal, hypogeous fungi in the Basidio- PPGBOT, Department of Botany, Universidade Federal mycota and Ascomycota are important components of do Rio Grande do Sul, Porto Alegre, Brazil 91501-970 the forest soil environment. Not only do they function Matthew E. Smith as nutrient absorbing organisms for their tree hosts, Department of Plant Pathology, University of Florida, these fungi also improve soil conditions (Perry et al. Gainesville, Florida 32611 1989) and interact with a variety of forest organisms (Trappe and Luoma 1992). In particular, they are an James M. Trappe important food source for animals in ectomycorrhizal Department of Forest Ecosystems and Society, Oregon forests (Maser et al. 1978, Claridge et al. 2002, Vernes State University, Corvallis, Oregon 97331 et al. 2004, Claridge and Trappe 2005, Trappe et al. Eduardo R. Nouhra 2006, Vernes 2010, Katarzˇyte˙ and Kutorga 2011, Instituto Multidisciplinario de Biologı´a Vegetal Schickmann et al. 2012), including those of Argentina (CONICET), Universidad Nacional de Co´rdoba, (Perez Calvo et al. 1989, Nouhra et al. 2005).