Chromosomal Banding Patterns in the Eyelid-Less Microteiid Radiation: Procellosaurinus and Vanzosaura (Squamata, Gymnophthalmidae)
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Modeling and Partitioning the Nucleotide Evolutionary Process for Phylogenetic and Comparative Genomic Inference
University of Central Florida STARS Electronic Theses and Dissertations, 2004-2019 2007 Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference Todd Castoe University of Central Florida Part of the Biology Commons Find similar works at: https://stars.library.ucf.edu/etd University of Central Florida Libraries http://library.ucf.edu This Doctoral Dissertation (Open Access) is brought to you for free and open access by STARS. It has been accepted for inclusion in Electronic Theses and Dissertations, 2004-2019 by an authorized administrator of STARS. For more information, please contact [email protected]. STARS Citation Castoe, Todd, "Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference" (2007). Electronic Theses and Dissertations, 2004-2019. 3111. https://stars.library.ucf.edu/etd/3111 MODELING AND PARTITIONING THE NUCLEOTIDE EVOLUTIONARY PROCESS FOR PHYLOGENETIC AND COMPARATIVE GENOMIC INFERENCE by TODD A. CASTOE B.S. SUNY – College of Environmental Science and Forestry, 1999 M.S. The University of Texas at Arlington, 2001 A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biomolecular Sciences in the Burnett College of Biomedical Sciences at the University of Central Florida Orlando, Florida Spring Term 2007 Major Professor: Christopher L. Parkinson © 2007 Todd A. Castoe ii ABSTRACT The transformation of genomic data into functionally relevant information about the composition of biological systems hinges critically on the field of computational genome biology, at the core of which lies comparative genomics. The aim of comparative genomics is to extract meaningful functional information from the differences and similarities observed across genomes of different organisms. -
A New Computing Environment for Modeling Species Distribution
EXPLORATORY RESEARCH RECOGNIZED WORLDWIDE Botany, ecology, zoology, plant and animal genetics. In these and other sub-areas of Biological Sciences, Brazilian scientists contributed with results recognized worldwide. FAPESP,São Paulo Research Foundation, is one of the main Brazilian agencies for the promotion of research.The foundation supports the training of human resources and the consolidation and expansion of research in the state of São Paulo. Thematic Projects are research projects that aim at world class results, usually gathering multidisciplinary teams around a major theme. Because of their exploratory nature, the projects can have a duration of up to five years. SCIENTIFIC OPPORTUNITIES IN SÃO PAULO,BRAZIL Brazil is one of the four main emerging nations. More than ten thousand doctorate level scientists are formed yearly and the country ranks 13th in the number of scientific papers published. The State of São Paulo, with 40 million people and 34% of Brazil’s GNP responds for 52% of the science created in Brazil.The state hosts important universities like the University of São Paulo (USP) and the State University of Campinas (Unicamp), the growing São Paulo State University (UNESP), Federal University of São Paulo (UNIFESP), Federal University of ABC (ABC is a metropolitan region in São Paulo), Federal University of São Carlos, the Aeronautics Technology Institute (ITA) and the National Space Research Institute (INPE). Universities in the state of São Paulo have strong graduate programs: the University of São Paulo forms two thousand doctorates every year, the State University of Campinas forms eight hundred and the University of the State of São Paulo six hundred. -
Literature Cited in Lizards Natural History Database
Literature Cited in Lizards Natural History database Abdala, C. S., A. S. Quinteros, and R. E. Espinoza. 2008. Two new species of Liolaemus (Iguania: Liolaemidae) from the puna of northwestern Argentina. Herpetologica 64:458-471. Abdala, C. S., D. Baldo, R. A. Juárez, and R. E. Espinoza. 2016. The first parthenogenetic pleurodont Iguanian: a new all-female Liolaemus (Squamata: Liolaemidae) from western Argentina. Copeia 104:487-497. Abdala, C. S., J. C. Acosta, M. R. Cabrera, H. J. Villaviciencio, and J. Marinero. 2009. A new Andean Liolaemus of the L. montanus series (Squamata: Iguania: Liolaemidae) from western Argentina. South American Journal of Herpetology 4:91-102. Abdala, C. S., J. L. Acosta, J. C. Acosta, B. B. Alvarez, F. Arias, L. J. Avila, . S. M. Zalba. 2012. Categorización del estado de conservación de las lagartijas y anfisbenas de la República Argentina. Cuadernos de Herpetologia 26 (Suppl. 1):215-248. Abell, A. J. 1999. Male-female spacing patterns in the lizard, Sceloporus virgatus. Amphibia-Reptilia 20:185-194. Abts, M. L. 1987. Environment and variation in life history traits of the Chuckwalla, Sauromalus obesus. Ecological Monographs 57:215-232. Achaval, F., and A. Olmos. 2003. Anfibios y reptiles del Uruguay. Montevideo, Uruguay: Facultad de Ciencias. Achaval, F., and A. Olmos. 2007. Anfibio y reptiles del Uruguay, 3rd edn. Montevideo, Uruguay: Serie Fauna 1. Ackermann, T. 2006. Schreibers Glatkopfleguan Leiocephalus schreibersii. Munich, Germany: Natur und Tier. Ackley, J. W., P. J. Muelleman, R. E. Carter, R. W. Henderson, and R. Powell. 2009. A rapid assessment of herpetofaunal diversity in variously altered habitats on Dominica. -
Crocodylus Moreletii
ANFIBIOS Y REPTILES: DIVERSIDAD E HISTORIA NATURAL VOLUMEN 03 NÚMERO 02 NOVIEMBRE 2020 ISSN: 2594-2158 Es un publicación de la CONSEJO DIRECTIVO 2019-2021 COMITÉ EDITORIAL Presidente Editor-en-Jefe Dr. Hibraim Adán Pérez Mendoza Dra. Leticia M. Ochoa Ochoa Universidad Nacional Autónoma de México Senior Editors Vicepresidente Dr. Marcio Martins (Artigos em português) Dr. Óscar A. Flores Villela Dr. Sean M. Rovito (English papers) Universidad Nacional Autónoma de México Editores asociados Secretario Dr. Uri Omar García Vázquez Dra. Ana Bertha Gatica Colima Dr. Armando H. Escobedo-Galván Universidad Autónoma de Ciudad Juárez Dr. Oscar A. Flores Villela Dra. Irene Goyenechea Mayer Goyenechea Tesorero Dr. Rafael Lara Rezéndiz Dra. Anny Peralta García Dr. Norberto Martínez Méndez Conservación de Fauna del Noroeste Dra. Nancy R. Mejía Domínguez Dr. Jorge E. Morales Mavil Vocal Norte Dr. Hibraim A. Pérez Mendoza Dr. Juan Miguel Borja Jiménez Dr. Jacobo Reyes Velasco Universidad Juárez del Estado de Durango Dr. César A. Ríos Muñoz Dr. Marco A. Suárez Atilano Vocal Centro Dra. Ireri Suazo Ortuño M. en C. Ricardo Figueroa Huitrón Dr. Julián Velasco Vinasco Universidad Nacional Autónoma de México M. en C. Marco Antonio López Luna Dr. Adrián García Rodríguez Vocal Sur M. en C. Marco Antonio López Luna Universidad Juárez Autónoma de Tabasco English style corrector PhD candidate Brett Butler Diseño editorial Lic. Andrea Vargas Fernández M. en A. Rafael de Villa Magallón http://herpetologia.fciencias.unam.mx/index.php/revista NOTAS CIENTÍFICAS SKIN TEXTURE CHANGE IN DIASPORUS HYLAEFORMIS (ANURA: ELEUTHERODACTYLIDAE) ..................... 95 CONTENIDO Juan G. Abarca-Alvarado NOTES OF DIET IN HIGHLAND SNAKES RHADINAEA EDITORIAL CALLIGASTER AND RHADINELLA GODMANI (SQUAMATA:DIPSADIDAE) FROM COSTA RICA ..... -
Reptile Fauna of the Chancani Reserve
©Österreichische Gesellschaft für Herpetologie e.V., Wien, Austria, download unter www.biologiezentrum.at SHORT NOTE HERPETOZOA 19(1/2) Wien, 30. Juli 2006 SHORT NOTE 85 tofauna of Round Island, Mauritius.- Biota, Race; 3(1- snake species (four families). Teius teyou 2): 77-84. PouGH, F. H. & ANDREWS, R. M. & CADLE, and Stenocercus doellojuradoi (lizards), and J. E. & CRUMP, M. L. & SAVITZKY, A. H & WELLS, K. D. (2004): Herpetology, third edition. Upper Saddle River Waglerophis merremi, Micrurus pyrrho- (Pearson, Prentice Hall), 726 pp. STAUB, F. (1993): cryptus and Crotalus durissus terrificus Fauna of Mauritius and associated flora. Port Louis, (snakes) were the most abundant species in Mauritius (Précigraph Ltd.), 97 pp.. each group (table 1). Field observations KEYWORDS: Reptilia: Squamata: Bolyeriidae, added three lizards (Tropidurus spinulosus, Bolyeria multocarinata; reproduction, eggs, additional newly discovered specimen, morphology, pholidosis Liolaemus sp. aff. gracilis and Vanzosaura rubricando) and one snake species {Boa SUBMITTED: May 20, 2005 constrictor occidentalis) and bibliographic AUTHORS: Dr. Jakob HALLERMANN, Biozent- rum Grindel und Zoologisches Museum Hamburg, sources added one turtle and one snake Martin-Luther-King-Platz 3, 20146 Hamburg, Germany species (table 1). < [email protected] >; Dr. Frank GLAW, Zo- We assigned the conservation status ologische Staatssammlung München, Münchhausen- categories provided by Secretarla de Ambi- straße 21, 81247 München, Germany < Frank.Glaw@ zsm.mwn.de > ente y Desarrollo Sustentable - Ministerio de Salud y Ambiente (2004). Accordingly, the lizard fauna of the Chancani Reserve Reptile fauna of the Chancani includes two species considered as "vulner- Reserve (Arid Chaco, Argentina): able" (Cnemidophorus serranus and Leio- species list and conservation status saurus paronae, and one Chaco endemic species (Stenocercus doellojuradoi) (LEY- The Chancani Provincial Reserve NAUD & BÛCHER 2005). -
Os Lagartos Gimnoftalmídeos (Squamata: Gymnophthalmidae) 365
OS LAGARTOS GIMNOFTALMÍDEOS (SQUAMATA: GYMNOPHTHALMIDAE) 365 OS LAGARTOS GIMNOFTALMÍDEOS (SQUAMATA: GYMNOPHTHALMIDAE) DO CARIRI PARAIBANO E DO SERIDÓ DO RIO GRANDE DO NORTE, NORDESTE DO BRASIL: CONSIDERAÇÕES ACERCA DA DISTRIBUIÇÃO GEOGRÁFICA E ECOLOGIA Fagner Ribeiro Delfim1* & Eliza Maria Xavier Freire2,3 1 Programa de Pós-Graduação em Ciências Biológicas - Área de Concentração em Zoologia. Departamento de Sistemática e Ecologia, Centro de Ciências Exatas e da Natureza, Universidade Federal da Paraíba. CEP: 58051-900. João Pessoa, PB, Brasil. 2 Departamento de Botânica, Ecologia e Zoologia, Universidade Federal do Rio Grande do Norte. CEP: 59072-970. Natal, RN, Brasil 3 Professora credenciada no PPG em Ciências Biológicas - Área de Concentração em Zoologia, Universidade Federal da Paraíba. * E-mail: [email protected] RESUMO O presente estudo objetivou inventariar a fauna de gimnoftalmídeos em algumas áreas de Caatinga no Cariri Paraibano e no Seridó do Rio Grande do Norte, mapear suas respectivas distribuições geográficas e discorrer sobre a história natural e uso do hábitat das mesmas. Quatro espécies de lagartos da família Gymnophthalmidae (Anotosaura vanzolinia; Acratosaura mentalis; Micrablepharus maximiliani e Vanzosaura rubricauda) foram registradas nas áreas amostradas. Apenas Vanzosaura rubricauda foi encontrada em todas as áreas exploradas, enquadrando-se em sua condição de táxon amplamente distribuído nas formações de vegetação aberta da América do Sul. Anotosaura vanzolinia e Acratosaura mentalis foram registradas em novas localidades, ampliando desta maneira suas respectivas distribuições no estado da Paraíba. A proposta de distribuição das espécies de gimnoftalmídeos ocorrentes na Caatinga foi mantida, sendo, portanto, improvável a ocorrência das espécies ligadas ao Campo de Dunas Paleoquaternárias do Médio Rio São Francisco em localidades de caatingas típicas, sem solos arenosos e/ou que não tiveram ligação histórico-geológica com esta área. -
Herpetological Journal FULL PAPER
Volume 28 (January 2018), 1-9 FULL PAPER Herpetological Journal Published by the British Morphological and mitochondrial variation of spur-thighedHerpetological Society tortoises, Testudo graeca, in Turkey Oguz Turkozan1, Ferhat Kiremit2, Brian R. Lavin3, Fevzi Bardakcı1 & James F. Parham4 1Adnan Menderes University, Faculty of Science and Arts, Department of Biology, 09010 Aydın, Turkey 2Adnan Menderes University, Faculty of Agriculture, Department of Agricultural Biotechnology, Koçarlı, Aydın, Turkey 3Department of Biology, Sonoma State University, 1801 East Cotati Avenue, Rohnert Park CA 94928, USA 4John D. Cooper Archaeology & Paleontology Center, Department of Geological Sciences, California State University, Fullerton, CA 92834, USA Testudo graeca has a wide distribution under different geographic, climatic and ecological conditions, and shows high morphological differences especially in the Asian (Middle Eastern and Caucasian) parts of the range. This study investigates morphometric and genetic differentiation in the T. graeca complex in Turkey using the densest sampling to date. We sequenced two mt-DNA loci (ND4 and cyt b) of 199 samples and combined them with previously published data. Bayesian analysis yielded six well-supported clades, four of which occur in Turkey (ibera, terrestris, armeniaca and buxtoni). The armeniaca mtDNA clade locally represents a morphometrically distinct burrowing ecomorph. However, previous studies have shown that individuals outside Turkey possessing armeniaca mtDNA lack the distinctive armeniaca morphotype we observed, precluding taxonomic conclusions. Key words: mtDNA, morphometry, Testudinidae, Testudo, Turkey INTRODUCTION the Mediterranean coast of Turkey are morphometrically homogenous, but that some inland Turkish populations pur-thighed tortoises (Testudo graeca Linnaeus are morphometrically distinct, reflecting some of the S1758) occur on three continents (Europe, Africa, genetic clade assignments of Parham et al. -
Red Tails Are Effective Decoys for Avian Predators
Evol Ecol DOI 10.1007/s10682-014-9739-2 Red tails are effective decoys for avian predators Bele´n Fresnillo • Josabel Belliure • Jose´ Javier Cuervo Received: 2 August 2014 / Accepted: 18 October 2014 Ó Springer International Publishing Switzerland 2014 Abstract The decoy or deflection hypothesis, which states that conspicuous colouration is present in non-vital parts of the body to divert attacks from head and trunk, thus increasing survival probability, is a possible explanation for the presence of such col- ouration in juveniles of non-aposematic species. To test this hypothesis we made plasticine and plaster lizard models of two colour morphs, red or dark-and-light striped tails, based on the colouration of spiny-footed lizard (Acanthodactylus erythrurus) hatchlings, which naturally show a dark-and-light striped dorsal pattern and red tail. Lizard models were placed in the field and also presented to captive common kestrels (Falco tinnunculus), a common avian lizard predator. The number of attacks and the body part attacked (tail or rest-of-body) were recorded, as well as the latency to attack. Our results suggest that models of both colour morphs were recognized as prey and attacked at a similar rate, but in the field, red-tailed models were detected, and thus attacked, sooner than striped-tailed. Despite this increase in detection rate by predators, red-tailed models effectively diverted attacks to the tail from the more vulnerable body parts, thus supporting the decoy hypothesis. Greater fitness benefits of attack diversion to the tail compared to the costs of increased detection rate by predators would explain the evolution and maintenance of red tail colouration in lizards. -
Gymnophthalmid and Tropidurid Lizards As Prey of the Crab-Eating Fox, Cerdocyon Thous (Linnaeus, 1766) (Carnivora: Canidae)
Herpetology Notes, volume 5: 463-466 (2012) (published online on 7 October 2012) Gymnophthalmid and tropidurid lizards as prey of the crab-eating fox, Cerdocyon thous (Linnaeus, 1766) (Carnivora: Canidae) Ellen Cândida Ataide Gomes1,2, Ana Paula Gomes Tavares1,2, Patricia Avello Nicola1,2, Luiz Cezar Machado Pereira1,2 and Leonardo Barros Ribeiro1,2,* Gymnophthalmid lizards occur from southern of C. thous. In the present study we report on two Mexico to Argentina, in the Caribbean, and on hitherto undescribed cases of lizard predation by some continental shelf islands of Central and South the crab-eating fox in the semiarid region of Brazil. America east of the Andes, and are generally small During a monitoring study of mastofauna conducted or medium-sized (Pellegrino et al., 2001; Vitt and by the Center for Fauna Conservation and Management Caldwell 2009). Currently, 85 species distributed of the Caatinga (CEMAFAUNA-CAATINGA/ within 33 genera are recognized in Brazil (Bérnils UNIVASF), eight fecal samples of Cerdocyon thous and Costa, 2011), some of which are restricted to were collected between September 2010 and January the northeastern region (Rodrigues et al., 2007; Rodrigues and Santos 2008; Rodrigues et al., 2009). The Tropiduridae is a reptilian family comprising a large number of known species among the Neotropical lizards (Torres-Carvajal, 2004). There are 36 species of tropidurids in Brazil, distributed into seven genera (Bérnils and Costa, 2011) living in open and forest habitats throughout the country (Howland, Vitt and Lopez, 1990; Vitt, Zani and Ávila-Pires, 1997; Ribeiro, Sousa and Gomides, 2009; Ribeiro and Freire, 2011). The crab-eating fox, Cerdocyon thous (Linnaeus, 1766) (Fig. -
Squamata, Gymnophthalmidae)
Phyllomedusa 3(2):83-94, 2004 © 2004 Melopsittacus Publicações Científicas ISSN 1519-1397 High frequency of pauses during intermittent locomotion of small South American gymnophthalmid lizards (Squamata, Gymnophthalmidae) Elizabeth Höfling1 and Sabine Renous2 1 Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo, Rua do Matão, Travessa 14, n° 321, 05508-900, São Paulo, SP, Brazil. E-mail: [email protected]. 2 USM 302, Département d’Ecologie et Gestion de la Biodiversité, Muséum National d’Histoire Naturelle, 55 rue Buffon, 75005, Paris, France. Abstract High frequency of pauses during intermittent locomotion of small South American gymnophthalmid lizards (Squamata, Gymnophthalmidae). We studied the locomotor behavior of two closely-related species of Gymnophthalmini lizards, Vanzosaura rubricauda and Procellosaurinus tetradactylus, that was imaged under laboratory conditions at a rate of 250 frames/s with a high-speed video camera (MotionScope PCI 1000) on four different substrates with increasing degrees of roughness (smooth perspex, cardboard, glued sand, and glued gravel). Vanzosaura rubricauda and P. tetradactylus are both characterized by intermittent locomotion, with pauses occurring with high frequency and having a short duration (from 1/10 to 1/3 s), and taking place in rhythmic locomotion in an organized fashion during all types of gaits and on different substrates. The observed variations in duration and frequency of pauses suggest that in V. rubricauda mean pause duration is shorter and pause frequency is higher than in P. tetradactylus. The intermittent locomotion observed in V. rubricauda and P. tetradactylus imaging at 250 frames/s is probably of interest for neurobiologists. In the review of possible determinants, the phylogenetic relationships among the species of the tribe Gymnophthalmini are focused. -
Zoology Thematic Projects
ZOOLOGY THEMATIC PROJECTS SYSTEMATIC AND EVOLUTION OF NEOTROPICAL HERPETOFAUNA Miguel Trefaut Urbano RODRIGUES Bioscience Institute / University of São Paulo (USP) The present proposal aims to continue and expand the ongoing multidisciplinary research on the systematic and Clade NE Clade NE2N evolution of the herpetological fauna from Neotropical areas, Clade NE1 as well as the study of historical biogeography of Neotropical reptile, amphibian and small mammal faunas.We intend to: Clade NE2S (1) expand the karyological data so far gathered for Brazilian lizards, amphibians and rodents, in order to better understand Clade NE1N their chromosomal evolution and detect useful characters Clade NE1 Clade NE1S for phylogenetic analyses; (2) complete the ongoing studies Clade SE 2 on taxonomy, karyotypes and DNA sequencing on the herpetological fauna of São Francisco dunes, obtaining intra and interspecific rates of divergences for endemic ratio; (3) study the heterocrony of the genus Calyptommatus and the ontogeny of the related Gymnophthalmini genera Clade SE1 in order to drive future studies on the developmental biology of the group; (4) proceed with the ongoing Clade SE collection of karyotypes and DNA sequences data on lizards of genus Leposoma to better understand its diversity and phylogeny; investigate the origin of parthenogenesis in L. percarinatum comparing the process with that of Gymnodactylus geckoides Phyllopezus pollicaris occurring in Gymnophthalmus underwoodii; (5) increase Hemidactylus mabouia the taxonomic and character sampling to the study of the phylogenetic relationships within the Gymnophthalmidae, Molecular phylogeny of the Gymnodactylus darwinii complex in order to obtain a robust hypothesis based on multiple for a region of mtDNA cytochrome b recovered by maximum data sets; (6) increase the sampling for lizards of genera parsimony (L=699; CI=0.72; RI=0.88). -
Lizard Fauna from the State of Paraíba, Northeastern Brazil: Current Knowledge and Sampling Discontinuities
Herpetology Notes, volume 12: 749-763 (2019) (published online on 09 July 2019) Lizard fauna from the state of Paraíba, northeastern Brazil: current knowledge and sampling discontinuities Lissa Dellefrate Franzini1,*, Izabel Regina Soares da Silva1, Daniel Oliveira Santana1, Fagner Ribeiro Delfim, Gustavo Henrique Calazans Vieira1, and Daniel Oliveira Mesquita1 Abstract. We compiled a list of lizard species from the state of Paraíba, Northeast Brazil to systematize and widen the knowledge about the lizard fauna in that state, which is still poorly known in most of its municipalities and has never been systematized in a species list. We considered data from the literature and the major scientific collections that house specimens from the state of Paraíba and we gathered a total of 2,767 records for 48 municipalities, corresponding to 36 lizard species of 27 genera and 12 families. The capital, municipality of João Pessoa, presented the highest number of species records. This number of records is a result of a high sampling effort, which is probably a consequence of the higher number of reptile specialists working in this municipality, which have for long contributed to the scientific knowledge on the region. Most of the records come from municipalities with protected areas near research centres, which are usually more accessible. In the remaining municipalities, sampling is still deficient, mainly in regions of the Caatinga domain. We calculated the evolutionary distinctiveness (ED) of the lizard species compiled in the study and verified that Diploglossus lessonae, Coleodactylus meridionalis, Lygodactylus kuglei, Iguana iguana, and Salvator merianae represent important evolutionary histories in the biodiversity of the state.