Zoology Thematic Projects
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Modeling and Partitioning the Nucleotide Evolutionary Process for Phylogenetic and Comparative Genomic Inference
University of Central Florida STARS Electronic Theses and Dissertations, 2004-2019 2007 Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference Todd Castoe University of Central Florida Part of the Biology Commons Find similar works at: https://stars.library.ucf.edu/etd University of Central Florida Libraries http://library.ucf.edu This Doctoral Dissertation (Open Access) is brought to you for free and open access by STARS. It has been accepted for inclusion in Electronic Theses and Dissertations, 2004-2019 by an authorized administrator of STARS. For more information, please contact [email protected]. STARS Citation Castoe, Todd, "Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference" (2007). Electronic Theses and Dissertations, 2004-2019. 3111. https://stars.library.ucf.edu/etd/3111 MODELING AND PARTITIONING THE NUCLEOTIDE EVOLUTIONARY PROCESS FOR PHYLOGENETIC AND COMPARATIVE GENOMIC INFERENCE by TODD A. CASTOE B.S. SUNY – College of Environmental Science and Forestry, 1999 M.S. The University of Texas at Arlington, 2001 A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biomolecular Sciences in the Burnett College of Biomedical Sciences at the University of Central Florida Orlando, Florida Spring Term 2007 Major Professor: Christopher L. Parkinson © 2007 Todd A. Castoe ii ABSTRACT The transformation of genomic data into functionally relevant information about the composition of biological systems hinges critically on the field of computational genome biology, at the core of which lies comparative genomics. The aim of comparative genomics is to extract meaningful functional information from the differences and similarities observed across genomes of different organisms. -
Zootaxa, a New Genus and Species of Eyelid-Less And
Zootaxa 1873: 50–60 (2008) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2008 · Magnolia Press ISSN 1175-5334 (online edition) A new genus and species of eyelid-less and limb reduced gymnophthalmid lizard from northeastern Brazil (Squamata, Gymnophthalmidae) MIGUEL TREFAUT RODRIGUES1 & EDNILZA MARANHÃO DOS SANTOS2 1Universidade de São Paulo, Instituto de Biociências, Departamento de Zoologia, Caixa Postal 11.461, CEP 05422-970, São Paulo, Brazil. E-mail: [email protected] 2Universidade Federal Rural de Pernambuco, Unidade Acadêmica de Serra Talhada, Departamento de Biologia, Fazenda Saco, s/n, Serra Talhada, Pernambuco, Brazil. E-mail: [email protected] Abstract Scriptosaura catimbau, a new genus and species of elongate, fossorial, sand swimming eyelid-less gymnophthalmid li- zard is described on the basis of specimens obtained at Fazenda Porto Seguro, municipality of Buíque, State of Pernam- buco, in the Caatingas of northeastern Brazil. The type locality is entirely included within the area of the recently created Parque Nacional do Catimbau. The new lizard lacks external forelimbs, has rudimentary styliform hindlimbs and is fur- ther characterized by the absence of prefrontal, frontal, frontoparietal and supraocular scales, and by having one pair of chin shields. A member of the Gymnophthalmini radiation, the new genus is considered to be sister to Calyptommatus from which it differs externally by the absence of an ocular scale and absence of an enlarged temporal scale. Key words: Scriptosaura catimbau, new genus, Gymnophthalmidae, taxonomy, Catimbau Nacional Park, Pernambuco State, Brazil, Caatingas Resumo Scriptosaura catimbau, um novo gênero e espécie arenícola de lagarto gimnoftalmídeo fossorial com corpo alongado e sem pálpebra é descrito com base em espécimes obtidos na Fazenda Porto Seguro, município de Buíque, estado de Per- nambuco, nas Caatingas do nordeste brasileiro. -
Parque Estadual Carlos Botelho
PARQUE ESTADUAL CARLOS BOTELHO ANEXOS Fundação Florestal Imagens da Capa: Interior da floresta - Fabio Colombini Esquerda: Beija-flor-preto-e-branco - Fabio Colombini Centro: Bromélia - Fabio Colombini Direita: Cachoeira Água da Vaca - Rogério Zaglobinski Este Plano de Manejo foi elaborado com a Coordenação Executiva do Instituto EKOS Brasil como parte integrante do Termo de Compromisso de Compensação Ambiental (TCCA) pela ampliação da Mina Limeira em Ribeirão Grande, formalizado no Processo SMA 13.603/99 e detalhado no Plano de Trabalho dos Planos de Manejo (Processo 043.176/2005). ÍNDICE Anexo 1. Agenda e Lista de Presença das Oficinas de Planejamento Anexo 2. Bibliografia Anexo 3. Imagens das Unidades de Terreno e Relevo do PECB Anexo 4. Fichas Cadastrais dos Impactos Ambientais da Rodovia SP-139 Anexo 5. Sistema de Descrição da Vegetação Adotado para o Mapeamento Anexo 6. Espécies de Plantas Vasculares com Ocorrência Registrada Anexo 7. Espécies de Invertebrados com Ocorrência Registrada Anexo 8. Espécies de Peixes com Ocorrência Registrada Anexo 9. Espécies da Herpetofauna com Ocorrência Registrada Anexo 10. Espécies da Avifauna com Ocorrência Registrada Anexo 11. Espécies de Grandes Mamíferos com Ocorrência Registrada Anexo 12. Grandes e Médios Mamíferos do Vale do Ribeira e Alto Paranapanema Anexo 13. Espécies de Pequenos Mamíferos e Quirópteros com Ocorrência Registrada Anexo 14. Definição dos Grupos Faunísticos Estudados Anexo 15. Caracterização dos Bairros Localizados no Entorno do PECB Anexo 16. Sítios Arqueológicos Cadastrados no IPHAN Anexo 17. Evidências e Indicações do Patrimônio Cultural Anexo 18. Cenários Históricos Anexo 19. Matriz de Acessos ao Parque Estadual Carlos Botelho Anexo 20. Dados sobre a Passagem de Romeiros na Rodovia SP-139 Anexo 21. -
A New Computing Environment for Modeling Species Distribution
EXPLORATORY RESEARCH RECOGNIZED WORLDWIDE Botany, ecology, zoology, plant and animal genetics. In these and other sub-areas of Biological Sciences, Brazilian scientists contributed with results recognized worldwide. FAPESP,São Paulo Research Foundation, is one of the main Brazilian agencies for the promotion of research.The foundation supports the training of human resources and the consolidation and expansion of research in the state of São Paulo. Thematic Projects are research projects that aim at world class results, usually gathering multidisciplinary teams around a major theme. Because of their exploratory nature, the projects can have a duration of up to five years. SCIENTIFIC OPPORTUNITIES IN SÃO PAULO,BRAZIL Brazil is one of the four main emerging nations. More than ten thousand doctorate level scientists are formed yearly and the country ranks 13th in the number of scientific papers published. The State of São Paulo, with 40 million people and 34% of Brazil’s GNP responds for 52% of the science created in Brazil.The state hosts important universities like the University of São Paulo (USP) and the State University of Campinas (Unicamp), the growing São Paulo State University (UNESP), Federal University of São Paulo (UNIFESP), Federal University of ABC (ABC is a metropolitan region in São Paulo), Federal University of São Carlos, the Aeronautics Technology Institute (ITA) and the National Space Research Institute (INPE). Universities in the state of São Paulo have strong graduate programs: the University of São Paulo forms two thousand doctorates every year, the State University of Campinas forms eight hundred and the University of the State of São Paulo six hundred. -
Integrative and Comparative Biology Integrative and Comparative Biology, Volume 60, Number 1, Pp
Integrative and Comparative Biology Integrative and Comparative Biology, volume 60, number 1, pp. 190–201 doi:10.1093/icb/icaa015 Society for Integrative and Comparative Biology SYMPOSIUM Convergent Evolution of Elongate Forms in Craniates and of Locomotion in Elongate Squamate Reptiles Downloaded from https://academic.oup.com/icb/article-abstract/60/1/190/5813730 by Clark University user on 24 July 2020 Philip J. Bergmann ,* Sara D. W. Mann,* Gen Morinaga,1,*,† Elyse S. Freitas‡ and Cameron D. Siler‡ *Department of Biology, Clark University, Worcester, MA, USA; †Department of Integrative Biology, Oklahoma State University, Stillwater, OK, USA; ‡Department of Biology and Sam Noble Oklahoma Museum of Natural History, University of Oklahoma, Norman, OK, USA From the symposium “Long Limbless Locomotors: The Mechanics and Biology of Elongate, Limbless Vertebrate Locomotion” presented at the annual meeting of the Society for Integrative and Comparative Biology January 3–7, 2020 at Austin, Texas. 1E-mail: [email protected] Synopsis Elongate, snake- or eel-like, body forms have evolved convergently many times in most major lineages of vertebrates. Despite studies of various clades with elongate species, we still lack an understanding of their evolutionary dynamics and distribution on the vertebrate tree of life. We also do not know whether this convergence in body form coincides with convergence at other biological levels. Here, we present the first craniate-wide analysis of how many times elongate body forms have evolved, as well as rates of its evolution and reversion to a non-elongate form. We then focus on five convergently elongate squamate species and test if they converged in vertebral number and shape, as well as their locomotor performance and kinematics. -
Papeis Avulsos De Zoologia
Papeis Avulsos de Zoologia MUSEU DE ZOOLOGIA DA UNIVERSIDADE DE SAO PAULO ISSN 0031-1049 P APEIS AV ULSOS ZO OL., S. P AULO 41(28): 529-546 20.IY.2001 A NEW SPECIES OF LIZARD, GENUS CALYPTOMMATUS, FROM THE CAATINGAS OF THE STATE OF PlAut, NORTHEASTERN BRAZIL (SQUAMATA, GYMNOPHTHALMIDAE) MIGUEL TREFAUT ROD RIGUES'· l lIuSSAM ZAIlER' FELIP EC URCIO' ABSTRACT Calyptommatus confusionibus, sp. n. is described based on ten specimens obtained at Toeada Cabocla (08°5'28 "S, 43°26 '58 "W), Parque Nacional da Serra das Confusiies, State ofPiaui, Brazil. The new species is characterized by the presence ofa distinctive supraocular between thefrontonasal andparietal scales, and by the presenc e offour supralabials, the third being the largest one. The new species is very similar in other characteristics to the three previously described species ofCalyptommatus. Keywords: Calyptommatus confusionibus, new species, Squamata, Gymnophthalmidae, INTRODUCTION Two years ago, we initiated a collaborative program with IBAMA's (Ins tituto Brasileiro de Meio Ambiente e dos Recursos Naturais Renovaveis) Regi onal Office, sponsored by the Fundacao Boticario, to undert ake an intensive I . Universidade de Sao Paulo, Instituto de Biocicncias, Departamento de Zoologia, Caixa Postal 11.46 1, CEP 05422-970 , Sao Paulo, Brazil 2. Museu de Zoo logia, Univcr sidade de Sao Paulo, Caixa Postal 42.694 , CEP 04299-9 70, Sao Paulo, Brazil Trabalho rceebido para publicacao em 12.1.200I e aeeito em 01.11.200I. 530 Papeis Avulsos de Zoologia survey of the terrestrial vertebrates within the yet largely unknown transitional areas of Cerrados and Caatingas from the southeastern part of the State of Piaui. -
Literature Cited in Lizards Natural History Database
Literature Cited in Lizards Natural History database Abdala, C. S., A. S. Quinteros, and R. E. Espinoza. 2008. Two new species of Liolaemus (Iguania: Liolaemidae) from the puna of northwestern Argentina. Herpetologica 64:458-471. Abdala, C. S., D. Baldo, R. A. Juárez, and R. E. Espinoza. 2016. The first parthenogenetic pleurodont Iguanian: a new all-female Liolaemus (Squamata: Liolaemidae) from western Argentina. Copeia 104:487-497. Abdala, C. S., J. C. Acosta, M. R. Cabrera, H. J. Villaviciencio, and J. Marinero. 2009. A new Andean Liolaemus of the L. montanus series (Squamata: Iguania: Liolaemidae) from western Argentina. South American Journal of Herpetology 4:91-102. Abdala, C. S., J. L. Acosta, J. C. Acosta, B. B. Alvarez, F. Arias, L. J. Avila, . S. M. Zalba. 2012. Categorización del estado de conservación de las lagartijas y anfisbenas de la República Argentina. Cuadernos de Herpetologia 26 (Suppl. 1):215-248. Abell, A. J. 1999. Male-female spacing patterns in the lizard, Sceloporus virgatus. Amphibia-Reptilia 20:185-194. Abts, M. L. 1987. Environment and variation in life history traits of the Chuckwalla, Sauromalus obesus. Ecological Monographs 57:215-232. Achaval, F., and A. Olmos. 2003. Anfibios y reptiles del Uruguay. Montevideo, Uruguay: Facultad de Ciencias. Achaval, F., and A. Olmos. 2007. Anfibio y reptiles del Uruguay, 3rd edn. Montevideo, Uruguay: Serie Fauna 1. Ackermann, T. 2006. Schreibers Glatkopfleguan Leiocephalus schreibersii. Munich, Germany: Natur und Tier. Ackley, J. W., P. J. Muelleman, R. E. Carter, R. W. Henderson, and R. Powell. 2009. A rapid assessment of herpetofaunal diversity in variously altered habitats on Dominica. -
Sauria, Gymnophthalmidae): Observações Preliminares
Revista de Etologia 2002, VComportamentool.4, N°1, 11-15 de acasalamento de Calyptommatus leiolepis O Comportamento de Acasalamento de Calyptommatus leiolepis Rodrigues, 1991 em Cativeiro (Sauria, Gymnophthalmidae): Observações Preliminares CLAUDEMIR DURAN FILHO E FLÁVIO DE BARROS MOLINA Fundação Parque Zoológico de São Paulo O comportamento de acasalamento de Calyptommatus leiolepis, um lagarto ápodo, é aqui relatado pela primei- ra vez. Foi observado em maio de 2001, no Zoológico de São Paulo. Parecem ocorrer sete fases distintas: 1) encontro do casal, 2) acompanhamento da fêmea pelo macho, 3) emparelhamento, 4) imobilização da fêmea, 5) pré-cópula, 6) cópula e 7) separação do casal. Interações físicas foram observadas apenas a partir da quarta fase, quando o macho morde a fêmea na região pós-cefálica. Movimentos intensos da cauda foram observados a partir da pré-cópula, quando também foi observado o uso das patas posteriores estiliformes para raspar o corpo da fêmea. Durante a cópula, o macho deixa de morder a fêmea. Estímulos químicos devem ser impor- tantes durante a segunda fase. Estímulos tácteis são importantes na quarta, quinta e sexta fase. Descritores: Acasalamento. Lagarto. Calyptommatus leiolepis. Mating behavior of Calyptommatus leiolepis Rodrigues, 1991 in captivity (Sauria, Gymnophthalmidae): first description. Mating behavior of Calyptommatus leiolepis, a legless lizard, is described for the first time. Observations were conducted at Sao Paulo Zoo during May 2001. Mating behavior can be divided in seven phases: 1) pair meeting, 2) female’s attendance by male, 3) pairing, 4) female’s immobilization, 5) pre-copulation, 6) copulation and 7) pair separation. Physical contacts occurred only after the 3rd phase when the male bit the female at the pos- cephalic area. -
Crocodylus Moreletii
ANFIBIOS Y REPTILES: DIVERSIDAD E HISTORIA NATURAL VOLUMEN 03 NÚMERO 02 NOVIEMBRE 2020 ISSN: 2594-2158 Es un publicación de la CONSEJO DIRECTIVO 2019-2021 COMITÉ EDITORIAL Presidente Editor-en-Jefe Dr. Hibraim Adán Pérez Mendoza Dra. Leticia M. Ochoa Ochoa Universidad Nacional Autónoma de México Senior Editors Vicepresidente Dr. Marcio Martins (Artigos em português) Dr. Óscar A. Flores Villela Dr. Sean M. Rovito (English papers) Universidad Nacional Autónoma de México Editores asociados Secretario Dr. Uri Omar García Vázquez Dra. Ana Bertha Gatica Colima Dr. Armando H. Escobedo-Galván Universidad Autónoma de Ciudad Juárez Dr. Oscar A. Flores Villela Dra. Irene Goyenechea Mayer Goyenechea Tesorero Dr. Rafael Lara Rezéndiz Dra. Anny Peralta García Dr. Norberto Martínez Méndez Conservación de Fauna del Noroeste Dra. Nancy R. Mejía Domínguez Dr. Jorge E. Morales Mavil Vocal Norte Dr. Hibraim A. Pérez Mendoza Dr. Juan Miguel Borja Jiménez Dr. Jacobo Reyes Velasco Universidad Juárez del Estado de Durango Dr. César A. Ríos Muñoz Dr. Marco A. Suárez Atilano Vocal Centro Dra. Ireri Suazo Ortuño M. en C. Ricardo Figueroa Huitrón Dr. Julián Velasco Vinasco Universidad Nacional Autónoma de México M. en C. Marco Antonio López Luna Dr. Adrián García Rodríguez Vocal Sur M. en C. Marco Antonio López Luna Universidad Juárez Autónoma de Tabasco English style corrector PhD candidate Brett Butler Diseño editorial Lic. Andrea Vargas Fernández M. en A. Rafael de Villa Magallón http://herpetologia.fciencias.unam.mx/index.php/revista NOTAS CIENTÍFICAS SKIN TEXTURE CHANGE IN DIASPORUS HYLAEFORMIS (ANURA: ELEUTHERODACTYLIDAE) ..................... 95 CONTENIDO Juan G. Abarca-Alvarado NOTES OF DIET IN HIGHLAND SNAKES RHADINAEA EDITORIAL CALLIGASTER AND RHADINELLA GODMANI (SQUAMATA:DIPSADIDAE) FROM COSTA RICA ..... -
Chromosomal Banding Patterns in the Eyelid-Less Microteiid Radiation: Procellosaurinus and Vanzosaura (Squamata, Gymnophthalmidae)
Cytogenet Cell Genet 74:203-210 (1996) Cytogenetics and CellGenetics Chromosomal banding patterns in the eyelid-less microteiid radiation: Procellosaurinus and Vanzosaura (Squamata, Gymnophthalmidae) Y. Yonenaqa-Yassuda.' L. Mori.' T.H. ChU,l and M.T. Rodriques? J Departamento de Biologia and 2 Departamento deZoologia, Institut o de Biocienci as, Universidade de Sao Paulo, Sao Paulo (Brazil) Abstract. Cytogenetic studies were performed on three spe staining. Despite similarities in chromosome number and mor ciesofeyelid-less microteiid s, Procellosaurinus erythrocerus, P. phology, each species can be differentiated by the position and tetradactylus. and Vanzosaura rubricauda (Squamata, Gym amount ofC-heterochromatin. Our cytogenetic and DNA con nophthalmidae), all with a diploid number of 2n = 40. The tent data indicate that there are more similarities between the specimens were collected in the palaeoquartenary dune fields of two species of Procellosaurinus than exist between either spe the middle Rio Sao Francisco in the State of Bahia, Brazil. cies and V rubricauda, reinforcing the importance of banding Chromosomes from fibroblast cultures were studied after rou techniques for the characterization of reptilian species. tine Giemsa staining, CBG- and RBG-banding, and Ag-NOR The fam ily Gymnophthalmidae currently comprises 35 mi nians and 25 species of snakes, totalling 20 new endemic rep croteiid genera dwelling in Central and South America . Al tiles (Rodrigues, 1991a-d, 1993, 1996; Vanzolini, 1991). The though a satisfactory phylogenetic scheme is still not available new genera of eyelid-less microteiid described in this region are for the whole family (Harris , 1985; Rodrigues, 1991a), a small Calyptom matus (three new species), Nothobachia (monotypic), group, characterized by the presence of scincoid scales and the Psilophthalmus (monotypic), and Procellosaurinus (two new absence of eyelids, has been admitted as monophyletic since species) (Rodrigues, 1991a-c). -
Diet of the Lizard Ecpleopus Gaudichaudii (Gymnophthalmidae) in Atlantic Rainforest, State of Rio De Janeiro, Brazil
ZOOLOGIA 28 (5): 587–592, October, 2011 doi: 10.1590/S1984-46702011000500006 Diet of the lizard Ecpleopus gaudichaudii (Gymnophthalmidae) in Atlantic Rainforest, state of Rio de Janeiro, Brazil Thiago Maia1, 5; Mauricio Almeida-Gomes1; Carla C. Siqueira2; Davor Vrcibradic3; Mara C. Kiefer4 & Carlos Frederico D. Rocha1 1 Departamento de Ecologia, Universidade do Estado do Rio de Janeiro. Rua São Francisco Xavier 524, 20550-019 Rio de Janeiro, RJ, Brazil. 2 Programa de Pós-Graduação em Ecologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro. Avenida Carlos Chagas Filho 373, Bloco A, Cidade Universitária, 21941-902 Rio de Janeiro, RJ, Brazil. 3 Departamento de Zoologia, Universidade Federal do Estado do Rio de Janeiro. Avenida Pasteur 458, Urca, 22240-290 Rio de Janeiro, RJ, Brazil. 4 Departamento de Biologia Geral, Instituto de Biologia, Universidade Federal Fluminense. Caixa Postal 100436, Centro, 24020-971 Niterói, RJ, Brazil. 5 Corresponding author. E-mail: [email protected] ABSTRACT. In this study we analyzed the diet of the gymnophthalmid lizard Ecpleopus gaudichaudii Duméril & Bibron, 1839, a typical inhabitant of the forest-floor leaf litter, in an Atlantic Forest area in the state of Rio de Janeiro, southeast- ern Brazil. The 26 individuals sampled during the study had a mean snout-vent length (SVL) of 36.2 ± 4.2 mm and a mean jaw width (JW) of 4.1 ± 0.5 mm. We did not find differences in SVL between males and females, though the sexes differed in JW when the effect of body size was factored out, with females presenting higher values. The diet of the lizards was composed exclusively of arthropods, especially isopods and orthopterans. -
Digit Evolution in Gymnophthalmid Lizards JULIANA G
Int. J. Dev. Biol. 58: 895-908 (2014) doi: 10.1387/ijdb.140255jg www.intjdevbiol.com Digit evolution in gymnophthalmid lizards JULIANA G. ROSCITO*,1, PEDRO M.S. NUNES2 and MIGUEL T. RODRIGUES1 1Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo-SP and 2Departamento de Zoologia, Centro de Ciências Biológicas, Universidade Federal de Pernambuco, Brazil ABSTRACT The tetrapod limb is a highly diverse structure, and reduction or loss of this structure accounts for many of the limb phenotypes observed within species. Squamate reptiles are one of the many tetrapod lineages in which the limbs have been greatly modified from the pentadactyl generalized pattern, including different degrees of reduction in the number of limb elements to complete limblessness. Even though limb reduction is widespread, the evolutionary and develop- mental mechanisms involved in the formation of reduced limb morphologies remains unclear. In this study, we present an overview of limb morphology within the microteiid lizard group Gymn- ophthalmidae, focusing on digit arrangement. We show that there are two major groups of limb- reduced gymnophthalmids. The first group is formed by lizard-like (and frequently pentadactyl) species, in which minor reductions (such as the loss of 1-2 phalanges mainly in digits I and V) are the rule; these morphologies generally correspond to those seen in other squamates. The second group is formed by species showing more drastic losses, which can include the absence of an ex- ternally distinct limb in adults. We also present the expression patterns of Sonic Hedgehog (Shh) in the greatly reduced fore and hindlimb of a serpentiform gymnophthalmid.