A Morphological and Molecular Study of Psilops, a Replacement Name For
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Modeling and Partitioning the Nucleotide Evolutionary Process for Phylogenetic and Comparative Genomic Inference
University of Central Florida STARS Electronic Theses and Dissertations, 2004-2019 2007 Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference Todd Castoe University of Central Florida Part of the Biology Commons Find similar works at: https://stars.library.ucf.edu/etd University of Central Florida Libraries http://library.ucf.edu This Doctoral Dissertation (Open Access) is brought to you for free and open access by STARS. It has been accepted for inclusion in Electronic Theses and Dissertations, 2004-2019 by an authorized administrator of STARS. For more information, please contact [email protected]. STARS Citation Castoe, Todd, "Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference" (2007). Electronic Theses and Dissertations, 2004-2019. 3111. https://stars.library.ucf.edu/etd/3111 MODELING AND PARTITIONING THE NUCLEOTIDE EVOLUTIONARY PROCESS FOR PHYLOGENETIC AND COMPARATIVE GENOMIC INFERENCE by TODD A. CASTOE B.S. SUNY – College of Environmental Science and Forestry, 1999 M.S. The University of Texas at Arlington, 2001 A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biomolecular Sciences in the Burnett College of Biomedical Sciences at the University of Central Florida Orlando, Florida Spring Term 2007 Major Professor: Christopher L. Parkinson © 2007 Todd A. Castoe ii ABSTRACT The transformation of genomic data into functionally relevant information about the composition of biological systems hinges critically on the field of computational genome biology, at the core of which lies comparative genomics. The aim of comparative genomics is to extract meaningful functional information from the differences and similarities observed across genomes of different organisms. -
“Relações Evolutivas Entre Ecologia E Morfologia Serpentiforme Em Espécies De Lagartos
UNIVERSIDADE DE SÃO PAULO FFCLRP - DEPARTAMENTO DE BIOLOGIA PROGRAMA DE PÓS-GRADUAÇÃO EM BIOLOGIA COMPARADA “Relações evolutivas entre ecologia e morfologia serpentiforme em espécies de lagartos microteiídeos (Sauria: Gymnophthalmidae)”. Mariana Bortoletto Grizante Dissertação apresentada à Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto da USP, como parte das exigências para a obtenção do título de Mestre em Ciências, Área: Biologia Comparada. Ribeirão Preto 2009 UNIVERSIDADE DE SÃO PAULO FFCLRP - DEPARTAMENTO DE BIOLOGIA PROGRAMA DE PÓS-GRADUAÇÃO EM BIOLOGIA COMPARADA “Relações evolutivas entre ecologia e morfologia serpentiforme em espécies de lagartos microteiídeos (Sauria: Gymnophthalmidae)”. Mariana Bortoletto Grizante Dissertação apresentada à Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto da USP, como parte das exigências para a obtenção do título de Mestre em Ciências, Área: Biologia Comparada. Orientadora: Profª. Drª. Tiana Kohlsdorf Ribeirão Preto 2009 “Relações evolutivas entre ecologia e morfologia serpentiforme em espécies de lagartos microteiídeos (Sauria: Gymnophthalmidae)”. Mariana Bortoletto Grizante Ribeirão Preto, _______________________________ de 2009. _________________________________ _________________________________ Prof(a). Dr(a). Prof(a). Dr(a). _________________________________ _________________________________ Prof(a). Dr(a). Prof(a). Dr(a). _________________________________ Prof ª. Drª. Tiana Kohlsdorf (Orientadora) Dedicado a Antonio Bortoletto e Vainer Grisante, exemplos de curiosidade e perseverança diante dos desafios. AGRADECIMENTOS Realizar esse trabalho só se tornou possível graças à colaboração e ao incentivo de muitas pessoas. A elas, agradeço e com elas, divido a alegria de concluir este trabalho. À Tiana, pela orientação, entusiasmo e confiança, pelas oportunidades, pela amizade, e pelo que ainda virá. Por fazer as histórias terem pé e cabeça! À FAPESP, pelo financiamento desse projeto (processo 2007/52204-8). -
A New Computing Environment for Modeling Species Distribution
EXPLORATORY RESEARCH RECOGNIZED WORLDWIDE Botany, ecology, zoology, plant and animal genetics. In these and other sub-areas of Biological Sciences, Brazilian scientists contributed with results recognized worldwide. FAPESP,São Paulo Research Foundation, is one of the main Brazilian agencies for the promotion of research.The foundation supports the training of human resources and the consolidation and expansion of research in the state of São Paulo. Thematic Projects are research projects that aim at world class results, usually gathering multidisciplinary teams around a major theme. Because of their exploratory nature, the projects can have a duration of up to five years. SCIENTIFIC OPPORTUNITIES IN SÃO PAULO,BRAZIL Brazil is one of the four main emerging nations. More than ten thousand doctorate level scientists are formed yearly and the country ranks 13th in the number of scientific papers published. The State of São Paulo, with 40 million people and 34% of Brazil’s GNP responds for 52% of the science created in Brazil.The state hosts important universities like the University of São Paulo (USP) and the State University of Campinas (Unicamp), the growing São Paulo State University (UNESP), Federal University of São Paulo (UNIFESP), Federal University of ABC (ABC is a metropolitan region in São Paulo), Federal University of São Carlos, the Aeronautics Technology Institute (ITA) and the National Space Research Institute (INPE). Universities in the state of São Paulo have strong graduate programs: the University of São Paulo forms two thousand doctorates every year, the State University of Campinas forms eight hundred and the University of the State of São Paulo six hundred. -
Bibliography and Scientific Name Index to Amphibians
lb BIBLIOGRAPHY AND SCIENTIFIC NAME INDEX TO AMPHIBIANS AND REPTILES IN THE PUBLICATIONS OF THE BIOLOGICAL SOCIETY OF WASHINGTON BULLETIN 1-8, 1918-1988 AND PROCEEDINGS 1-100, 1882-1987 fi pp ERNEST A. LINER Houma, Louisiana SMITHSONIAN HERPETOLOGICAL INFORMATION SERVICE NO. 92 1992 SMITHSONIAN HERPETOLOGICAL INFORMATION SERVICE The SHIS series publishes and distributes translations, bibliographies, indices, and similar items judged useful to individuals interested in the biology of amphibians and reptiles, but unlikely to be published in the normal technical journals. Single copies are distributed free to interested individuals. Libraries, herpetological associations, and research laboratories are invited to exchange their publications with the Division of Amphibians and Reptiles. We wish to encourage individuals to share their bibliographies, translations, etc. with other herpetologists through the SHIS series. If you have such items please contact George Zug for instructions on preparation and submission. Contributors receive 50 free copies. Please address all requests for copies and inquiries to George Zug, Division of Amphibians and Reptiles, National Museum of Natural History, Smithsonian Institution, Washington DC 20560 USA. Please include a self-addressed mailing label with requests. INTRODUCTION The present alphabetical listing by author (s) covers all papers bearing on herpetology that have appeared in Volume 1-100, 1882-1987, of the Proceedings of the Biological Society of Washington and the four numbers of the Bulletin series concerning reference to amphibians and reptiles. From Volume 1 through 82 (in part) , the articles were issued as separates with only the volume number, page numbers and year printed on each. Articles in Volume 82 (in part) through 89 were issued with volume number, article number, page numbers and year. -
Literature Cited in Lizards Natural History Database
Literature Cited in Lizards Natural History database Abdala, C. S., A. S. Quinteros, and R. E. Espinoza. 2008. Two new species of Liolaemus (Iguania: Liolaemidae) from the puna of northwestern Argentina. Herpetologica 64:458-471. Abdala, C. S., D. Baldo, R. A. Juárez, and R. E. Espinoza. 2016. The first parthenogenetic pleurodont Iguanian: a new all-female Liolaemus (Squamata: Liolaemidae) from western Argentina. Copeia 104:487-497. Abdala, C. S., J. C. Acosta, M. R. Cabrera, H. J. Villaviciencio, and J. Marinero. 2009. A new Andean Liolaemus of the L. montanus series (Squamata: Iguania: Liolaemidae) from western Argentina. South American Journal of Herpetology 4:91-102. Abdala, C. S., J. L. Acosta, J. C. Acosta, B. B. Alvarez, F. Arias, L. J. Avila, . S. M. Zalba. 2012. Categorización del estado de conservación de las lagartijas y anfisbenas de la República Argentina. Cuadernos de Herpetologia 26 (Suppl. 1):215-248. Abell, A. J. 1999. Male-female spacing patterns in the lizard, Sceloporus virgatus. Amphibia-Reptilia 20:185-194. Abts, M. L. 1987. Environment and variation in life history traits of the Chuckwalla, Sauromalus obesus. Ecological Monographs 57:215-232. Achaval, F., and A. Olmos. 2003. Anfibios y reptiles del Uruguay. Montevideo, Uruguay: Facultad de Ciencias. Achaval, F., and A. Olmos. 2007. Anfibio y reptiles del Uruguay, 3rd edn. Montevideo, Uruguay: Serie Fauna 1. Ackermann, T. 2006. Schreibers Glatkopfleguan Leiocephalus schreibersii. Munich, Germany: Natur und Tier. Ackley, J. W., P. J. Muelleman, R. E. Carter, R. W. Henderson, and R. Powell. 2009. A rapid assessment of herpetofaunal diversity in variously altered habitats on Dominica. -
Crocodylus Moreletii
ANFIBIOS Y REPTILES: DIVERSIDAD E HISTORIA NATURAL VOLUMEN 03 NÚMERO 02 NOVIEMBRE 2020 ISSN: 2594-2158 Es un publicación de la CONSEJO DIRECTIVO 2019-2021 COMITÉ EDITORIAL Presidente Editor-en-Jefe Dr. Hibraim Adán Pérez Mendoza Dra. Leticia M. Ochoa Ochoa Universidad Nacional Autónoma de México Senior Editors Vicepresidente Dr. Marcio Martins (Artigos em português) Dr. Óscar A. Flores Villela Dr. Sean M. Rovito (English papers) Universidad Nacional Autónoma de México Editores asociados Secretario Dr. Uri Omar García Vázquez Dra. Ana Bertha Gatica Colima Dr. Armando H. Escobedo-Galván Universidad Autónoma de Ciudad Juárez Dr. Oscar A. Flores Villela Dra. Irene Goyenechea Mayer Goyenechea Tesorero Dr. Rafael Lara Rezéndiz Dra. Anny Peralta García Dr. Norberto Martínez Méndez Conservación de Fauna del Noroeste Dra. Nancy R. Mejía Domínguez Dr. Jorge E. Morales Mavil Vocal Norte Dr. Hibraim A. Pérez Mendoza Dr. Juan Miguel Borja Jiménez Dr. Jacobo Reyes Velasco Universidad Juárez del Estado de Durango Dr. César A. Ríos Muñoz Dr. Marco A. Suárez Atilano Vocal Centro Dra. Ireri Suazo Ortuño M. en C. Ricardo Figueroa Huitrón Dr. Julián Velasco Vinasco Universidad Nacional Autónoma de México M. en C. Marco Antonio López Luna Dr. Adrián García Rodríguez Vocal Sur M. en C. Marco Antonio López Luna Universidad Juárez Autónoma de Tabasco English style corrector PhD candidate Brett Butler Diseño editorial Lic. Andrea Vargas Fernández M. en A. Rafael de Villa Magallón http://herpetologia.fciencias.unam.mx/index.php/revista NOTAS CIENTÍFICAS SKIN TEXTURE CHANGE IN DIASPORUS HYLAEFORMIS (ANURA: ELEUTHERODACTYLIDAE) ..................... 95 CONTENIDO Juan G. Abarca-Alvarado NOTES OF DIET IN HIGHLAND SNAKES RHADINAEA EDITORIAL CALLIGASTER AND RHADINELLA GODMANI (SQUAMATA:DIPSADIDAE) FROM COSTA RICA ..... -
Redalyc.Comparative Studies of Supraocular Lepidosis in Squamata
Multequina ISSN: 0327-9375 [email protected] Instituto Argentino de Investigaciones de las Zonas Áridas Argentina Cei, José M. Comparative studies of supraocular lepidosis in squamata (reptilia) and its relationships with an evolutionary taxonomy Multequina, núm. 16, 2007, pp. 1-52 Instituto Argentino de Investigaciones de las Zonas Áridas Mendoza, Argentina Disponible en: http://www.redalyc.org/articulo.oa?id=42801601 Cómo citar el artículo Número completo Sistema de Información Científica Más información del artículo Red de Revistas Científicas de América Latina, el Caribe, España y Portugal Página de la revista en redalyc.org Proyecto académico sin fines de lucro, desarrollado bajo la iniciativa de acceso abierto ISSN 0327-9375 COMPARATIVE STUDIES OF SUPRAOCULAR LEPIDOSIS IN SQUAMATA (REPTILIA) AND ITS RELATIONSHIPS WITH AN EVOLUTIONARY TAXONOMY ESTUDIOS COMPARATIVOS DE LA LEPIDOSIS SUPRA-OCULAR EN SQUAMATA (REPTILIA) Y SU RELACIÓN CON LA TAXONOMÍA EVOLUCIONARIA JOSÉ M. CEI † las subfamilias Leiosaurinae y RESUMEN Enyaliinae. Siempre en Iguania Observaciones morfológicas Pleurodonta se evidencian ejemplos previas sobre un gran número de como los inconfundibles patrones de especies permiten establecer una escamas supraoculares de correspondencia entre la Opluridae, Leucocephalidae, peculiaridad de los patrones Polychrotidae, Tropiduridae. A nivel sistemáticos de las escamas específico la interdependencia en supraoculares de Squamata y la Iguanidae de los géneros Iguana, posición evolutiva de cada taxón Cercosaura, Brachylophus, -
<I>Alopoglossus Atriventris
HERPETOLOGICAL JOURNAL 17: 269–272, 2007 digenean Mesocoelium monas in Prionodactylus Short Note eigenmanni, also from Brazil. The purpose of this paper is to present an initial helminth list for Alopoglossus angulatus and A. atriventris. Parasite communities of two Nineteen Alopoglossus angulatus (mean snout–vent length [SVL] = 42.1±13.4 mm, range 24–60 mm) and 16 A. lizard species, Alopoglossus atriventris (SVL = 36.9±9.2 mm, range 21–48 mm) were angulatus and Alopoglossus borrowed from the herpetology collection of the Sam No- ble Oklahoma Museum of Natural History (OMNH) and atriventris, from Brazil and examined for helminths. Stomachs from these lizards had previously been removed and were not available for this Ecuador study. Collection localities are as follows. Alopoglossus angulatus: 14 (OMNH 36931–36944) from Acre state, Bra- Stephen R. Goldberg1, Charles R. zil 1996; one (OMNH 37125) from Amazonas state, Brazil Bursey2 & Laurie J. Vitt3 1997; one (OMNH 37337) from Rondônia state, Brazil 1998; three (OMNH 36440–36442) from Sucumbíos prov- 1Department of Biology, Whittier College, California, USA ince, Ecuador 1994. Alopoglossus atriventris: eight 2Department of Biology, Pennsylvania State University, USA (OMNH 36945–36952) from Acre state, Brazil 1996; four 3Sam Noble Oklahoma Museum of Natural History and (OMNH 37126–37129) from Amazonas state, Brazil 1997; Zoology Department, University of Oklahoma, USA two (OMNH 37637–37638) from Amazonas state, Brazil 1998; two (OMNH 36438–36439) from Sucumbíos prov- Alopoglossus angulatus and A. atriventris from Brazil ince, Ecuador 1994. These lizards had originally been fixed and Ecuador were examined for endoparasites. in 10% formalin and stored in 70% ethanol. -
Chromosomal Banding Patterns in the Eyelid-Less Microteiid Radiation: Procellosaurinus and Vanzosaura (Squamata, Gymnophthalmidae)
Cytogenet Cell Genet 74:203-210 (1996) Cytogenetics and CellGenetics Chromosomal banding patterns in the eyelid-less microteiid radiation: Procellosaurinus and Vanzosaura (Squamata, Gymnophthalmidae) Y. Yonenaqa-Yassuda.' L. Mori.' T.H. ChU,l and M.T. Rodriques? J Departamento de Biologia and 2 Departamento deZoologia, Institut o de Biocienci as, Universidade de Sao Paulo, Sao Paulo (Brazil) Abstract. Cytogenetic studies were performed on three spe staining. Despite similarities in chromosome number and mor ciesofeyelid-less microteiid s, Procellosaurinus erythrocerus, P. phology, each species can be differentiated by the position and tetradactylus. and Vanzosaura rubricauda (Squamata, Gym amount ofC-heterochromatin. Our cytogenetic and DNA con nophthalmidae), all with a diploid number of 2n = 40. The tent data indicate that there are more similarities between the specimens were collected in the palaeoquartenary dune fields of two species of Procellosaurinus than exist between either spe the middle Rio Sao Francisco in the State of Bahia, Brazil. cies and V rubricauda, reinforcing the importance of banding Chromosomes from fibroblast cultures were studied after rou techniques for the characterization of reptilian species. tine Giemsa staining, CBG- and RBG-banding, and Ag-NOR The fam ily Gymnophthalmidae currently comprises 35 mi nians and 25 species of snakes, totalling 20 new endemic rep croteiid genera dwelling in Central and South America . Al tiles (Rodrigues, 1991a-d, 1993, 1996; Vanzolini, 1991). The though a satisfactory phylogenetic scheme is still not available new genera of eyelid-less microteiid described in this region are for the whole family (Harris , 1985; Rodrigues, 1991a), a small Calyptom matus (three new species), Nothobachia (monotypic), group, characterized by the presence of scincoid scales and the Psilophthalmus (monotypic), and Procellosaurinus (two new absence of eyelids, has been admitted as monophyletic since species) (Rodrigues, 1991a-c). -
A Rapid Biological Assessment of the Upper Palumeu River Watershed (Grensgebergte and Kasikasima) of Southeastern Suriname
Rapid Assessment Program A Rapid Biological Assessment of the Upper Palumeu River Watershed (Grensgebergte and Kasikasima) of Southeastern Suriname Editors: Leeanne E. Alonso and Trond H. Larsen 67 CONSERVATION INTERNATIONAL - SURINAME CONSERVATION INTERNATIONAL GLOBAL WILDLIFE CONSERVATION ANTON DE KOM UNIVERSITY OF SURINAME THE SURINAME FOREST SERVICE (LBB) NATURE CONSERVATION DIVISION (NB) FOUNDATION FOR FOREST MANAGEMENT AND PRODUCTION CONTROL (SBB) SURINAME CONSERVATION FOUNDATION THE HARBERS FAMILY FOUNDATION Rapid Assessment Program A Rapid Biological Assessment of the Upper Palumeu River Watershed RAP (Grensgebergte and Kasikasima) of Southeastern Suriname Bulletin of Biological Assessment 67 Editors: Leeanne E. Alonso and Trond H. Larsen CONSERVATION INTERNATIONAL - SURINAME CONSERVATION INTERNATIONAL GLOBAL WILDLIFE CONSERVATION ANTON DE KOM UNIVERSITY OF SURINAME THE SURINAME FOREST SERVICE (LBB) NATURE CONSERVATION DIVISION (NB) FOUNDATION FOR FOREST MANAGEMENT AND PRODUCTION CONTROL (SBB) SURINAME CONSERVATION FOUNDATION THE HARBERS FAMILY FOUNDATION The RAP Bulletin of Biological Assessment is published by: Conservation International 2011 Crystal Drive, Suite 500 Arlington, VA USA 22202 Tel : +1 703-341-2400 www.conservation.org Cover photos: The RAP team surveyed the Grensgebergte Mountains and Upper Palumeu Watershed, as well as the Middle Palumeu River and Kasikasima Mountains visible here. Freshwater resources originating here are vital for all of Suriname. (T. Larsen) Glass frogs (Hyalinobatrachium cf. taylori) lay their -
Reptile Fauna of the Chancani Reserve
©Österreichische Gesellschaft für Herpetologie e.V., Wien, Austria, download unter www.biologiezentrum.at SHORT NOTE HERPETOZOA 19(1/2) Wien, 30. Juli 2006 SHORT NOTE 85 tofauna of Round Island, Mauritius.- Biota, Race; 3(1- snake species (four families). Teius teyou 2): 77-84. PouGH, F. H. & ANDREWS, R. M. & CADLE, and Stenocercus doellojuradoi (lizards), and J. E. & CRUMP, M. L. & SAVITZKY, A. H & WELLS, K. D. (2004): Herpetology, third edition. Upper Saddle River Waglerophis merremi, Micrurus pyrrho- (Pearson, Prentice Hall), 726 pp. STAUB, F. (1993): cryptus and Crotalus durissus terrificus Fauna of Mauritius and associated flora. Port Louis, (snakes) were the most abundant species in Mauritius (Précigraph Ltd.), 97 pp.. each group (table 1). Field observations KEYWORDS: Reptilia: Squamata: Bolyeriidae, added three lizards (Tropidurus spinulosus, Bolyeria multocarinata; reproduction, eggs, additional newly discovered specimen, morphology, pholidosis Liolaemus sp. aff. gracilis and Vanzosaura rubricando) and one snake species {Boa SUBMITTED: May 20, 2005 constrictor occidentalis) and bibliographic AUTHORS: Dr. Jakob HALLERMANN, Biozent- rum Grindel und Zoologisches Museum Hamburg, sources added one turtle and one snake Martin-Luther-King-Platz 3, 20146 Hamburg, Germany species (table 1). < [email protected] >; Dr. Frank GLAW, Zo- We assigned the conservation status ologische Staatssammlung München, Münchhausen- categories provided by Secretarla de Ambi- straße 21, 81247 München, Germany < Frank.Glaw@ zsm.mwn.de > ente y Desarrollo Sustentable - Ministerio de Salud y Ambiente (2004). Accordingly, the lizard fauna of the Chancani Reserve Reptile fauna of the Chancani includes two species considered as "vulner- Reserve (Arid Chaco, Argentina): able" (Cnemidophorus serranus and Leio- species list and conservation status saurus paronae, and one Chaco endemic species (Stenocercus doellojuradoi) (LEY- The Chancani Provincial Reserve NAUD & BÛCHER 2005). -
Nota De Aceptación
NOTA DE ACEPTACIÓN _____________________________ _____________________________ _____________________________ _____________________________ __________________________________________ DIRECTOR DE PROGRAMA __________________________________________ EVALUADOR __________________________________________ EVALUADOR Santa Marta, 2018 1 UNIVERSIDAD DEL MAGDALENA FACULTAD DE CIENCIAS BÁSICAS PROGRAMA DE BIOLOGÍA VARIACIÓN EN LA COLORACIÓN CAUDAL Y MORFOLOGÍA INTRA-ESPECÍFICA EN Tretioscincus bifasciatus (SAURIA: GYMNOPHTHALMIDAE) EN PARCHES DE BOSQUE SECO TROPICAL DEL MAGDALENA, COLOMBIA. Sintana Rojas Montaño Propuesta de grado para obtener el título de Biólogo Director Msc. Luis Alberto Rueda Solano Co-director PhD. Bibiana Rojas SANTA MARTA D.T.C.H. 2018 2 AGRADECIMIENTOS Agradezco enormemente a todas aquellas personas que aportaron desde una pequeña idea, un comentario hasta aquellos que me acompañaron en cada salida, en cada muestreo, en los análisis, en cada risa y en cada tropiezo. Por lo que siempre quedaré en deuda con todos aquellos que me apoyaron y confiaron en mí, para poder realizar tan especial proyecto, por esto quiero agradecer de manera muy especial a las siguientes entidades y personas que fueron partes fundamentales de este trabajo: A la Universidad del Magdalena, mi casa de estudios, mi segundo hogar, que me brindó las facilidades para poder desarrollarme como un profesional íntegro. A la Facultad de Ciencias Básicas y al programa de Biología, a todo el cuerpo administrativo y de gestión que me acompañaron paso a paso y que vieron mi progresar en mi vida académica, que siempre me respaldaron y me dieron una mano cuando la necesitaba. A la Vicerrectoría de Investigación y Extensión por el financiamiento de este proyecto, ya que sin él no se hubiese podido llevar a cabo. Agradezco no sólo el apoyo en la adquisición de equipos sino también en la ejecución de las salidas de campo.