Cell, Mitosis and Cell Membrane Transport
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Spring 2013 Lecture 23
CHM333 LECTURES 23: 3/25/13 SPRING 2013 Professor Christine Hrycyna LIPIDS III EFFECT OF CHOLESTEROL ON MEMBRANES: - Bulky rigid molecule - Moderates fluidity of membranes – both increases and decreases o Cholesterol in membranes DECREASES fluidity because it is rigid o Prevents crystallization (making solid) of fatty acyl side chains by fitting between them. Disrupts close packing of fatty acyl chains. Therefore, INCREASED fluidity BIOLOGICAL MEMBRANES CONTAIN PROTEINS AS WELL AS LIPIDS: - Proteins are 20-80% of cell membrane - Rest is lipid or carbohydrate; supramolecular assembly of lipid, protein and carbohydrate - Proteins are also distributed asymmetrically - TWO classes of Membrane Proteins: o Integral Membrane Proteins o Peripheral Membrane Proteins 178 CHM333 LECTURES 23: 3/25/13 SPRING 2013 Professor Christine Hrycyna - INTEGRAL MEMBRANE PROTEINS o Located WITHIN the lipid bilayer o Usually span the bilayer one or more times – called transmembrane (TM) proteins o Hydrophobic amino acids interact with fatty acid chains in the hydrophobic core of the membrane o Can be removed from the membrane with detergents like SDS – need to disrupt the hydrophobic interactions § Membrane Disruption Animation: o http://www.youtube.com/watch?v=AHT37pvcjc0 o Function: § Transporters – moving molecules into or out of cells or cell membranes § Receptors – transmitting signals from outside of the cell to the inside - β Barrel Integral Membrane Proteins § Barrel-shaped membrane protein that is made up of antiparallel β-strands with hydrophilic (interior) and hydrophobic (facing lipid tails). § So far found only in outer membranes of Gram-negative bacteria, cell wall of Gram-positive bacteria, and outer membranes of mitochondria and chloroplasts. 179 CHM333 LECTURES 23: 3/25/13 SPRING 2013 Professor Christine Hrycyna - α-Helical Membrane Proteins - Can cross the membrane once or many times and have multiple transmembrane segments. -
A Tour of the Cell Overview
Unit 3: The Cell Name______________________ Chapter 6: A Tour of the Cell Overview 6.1 Biologists use microscopes and the tools of biochemistry to study cells The discovery and early study of cells progressed with the invention of microscopes in 1590 and their improvement in the 17th century. In a light microscope (LM), visible light passes through the specimen and then through glass lenses. ○ The lenses refract light so that the image is magnified into the eye or a camera. Microscopes vary in magnification, resolution, and contrast. ○ Magnification is the ratio of an object’s image to its real size. A light microscope can magnify effectively to about 1,000 times the real size of a specimen. ○ Resolution is a measure of image clarity. It is the minimum distance two points can be separated and still be distinguished as two separate points. The minimum resolution of an LM is about 200 nanometers (nm), the size of a small bacterium. ○ Contrast accentuates differences in parts of the sample. It can be improved by staining or labeling of cell components so they stand out. Although an LM can resolve individual cells, it cannot resolve much of the internal anatomy, especially the organelles, membrane-enclosed structures within eukaryotic cells. The size range of cells 1 To resolve smaller structures, scientists use an electron microscope (EM), which focuses a beam of electrons through the specimen or onto its surface. ○ Theoretically, the resolution of a modern EM could reach 0.002 nm, but the practical limit is closer to about 2 nm. Scanning electron microscopes (SEMs) are useful for studying the surface structure or topography of a specimen. -
The Endomembrane System and Proteins
Chapter 4 | Cell Structure 121 Endosymbiosis We have mentioned that both mitochondria and chloroplasts contain DNA and ribosomes. Have you wondered why? Strong evidence points to endosymbiosis as the explanation. Symbiosis is a relationship in which organisms from two separate species depend on each other for their survival. Endosymbiosis (endo- = “within”) is a mutually beneficial relationship in which one organism lives inside the other. Endosymbiotic relationships abound in nature. We have already mentioned that microbes that produce vitamin K live inside the human gut. This relationship is beneficial for us because we are unable to synthesize vitamin K. It is also beneficial for the microbes because they are protected from other organisms and from drying out, and they receive abundant food from the environment of the large intestine. Scientists have long noticed that bacteria, mitochondria, and chloroplasts are similar in size. We also know that bacteria have DNA and ribosomes, just like mitochondria and chloroplasts. Scientists believe that host cells and bacteria formed an endosymbiotic relationship when the host cells ingested both aerobic and autotrophic bacteria (cyanobacteria) but did not destroy them. Through many millions of years of evolution, these ingested bacteria became more specialized in their functions, with the aerobic bacteria becoming mitochondria and the autotrophic bacteria becoming chloroplasts. The Central Vacuole Previously, we mentioned vacuoles as essential components of plant cells. If you look at Figure 4.8b, you will see that plant cells each have a large central vacuole that occupies most of the cell's area. The central vacuole plays a key role in regulating the cell’s concentration of water in changing environmental conditions. -
The Membrane
The Membrane Natalie Gugala1*, Stephana J Cherak1 and Raymond J Turner1 1Department of Biological Sciences, University of Calgary, Canada *Corresponding author: RJ Turner, Department of Biological Sciences, University of Calgary, Alberta, Canada, Tel: 1-403-220-4308; Fax: 1-403-289-9311; Email: [email protected] Published Date: February 10, 2016 ABSTRACT and continues to be studied. The biological membrane is comprised of numerous amphiphilic The characterization of the cell membrane has significantly extended over the past century lipids, sterols, proteins, carbohydrates, ions and water molecules that result in two asymmetric polar leaflets, in which the interior is hydrophobic due to the hydrocarbon tails of the lipids. generated a dynamic heterogonous image of the membrane that includes lateral domains and The extension of the Fluid Mosaic Model, first proposed by Singer and Nicolson in 1972, has clusters perpetrated by lipid-lipid, protein-lipid and protein-protein interactions. Proteins found within the membrane, which are generally characterized as either intrinsic or extrinsic, have an array of biological functions vital for cell activity. The primary role of the membrane, among many, is to provide a barrier that conveys both separation and protection, thus maintaining the integrity of the cell. However, depending on the permeability of the membrane several ions are able to move down their concentration gradients. In turn this generates a membrane potential difference between the cytosol, which is found to have an excess negative charge, and surrounding extracellular fluid. Across a biological cell membrane, several potentials can be found. These include the Nernst or equilibrium potential, in which there is no overall flow of a Basicparticular Biochemistry ion and | www.austinpublishinggroup.com/ebooks the Donnan potential, created by an unequal distribution of ions. -
Vesicle Traffic in the Endomembrane System: a Tale of Cops, Rabs and Snares Andreas Nebenführ
507 Vesicle traffic in the endomembrane system: a tale of COPs, Rabs and SNAREs Andreas Nebenführ Recent years have seen remarkable progress in our contrast, mammalian cells have an intermediate recycling understanding of the endomembrane system of plants. A large compartment between the ER and the Golgi, the vesiculo- number of genes and proteins that are involved in membrane tubular cluster (VTC), that does not exist in plants. exchange between the different compartments of this system have been identified on the basis of their similarity to animal The transport of proteins and membranes between the and yeast homologs. These proteins indicate that the different compartments of the endomembrane system is endomembrane system in plants functions in essentially the mediated by small carriers, the transport vesicles. The same way as those in other eukaryotes. However, a growing basic mechanisms involved in membrane-exchange reactions number of examples demonstrate that the dynamic interplay appear to be the same, irrespective of the organelles between membrane-exchange proteins can be regulated involved [2]. The initial step involves the formation of a differently in plant cells. Novel tools and a better understanding proteinaceous membrane coat that plays a two-fold role. of the molecular effects of the inhibitor brefeldin A are helping First, coat proteins deform the membrane so as to form a to unravel these plant-specific adaptations. bud and eventually a vesicle, and second, they are involved in cargo selection. The assembly of the coat is Addresses controlled by a small GTPase of the Ras superfamily, University of Tennessee, Department of Botany and School of which in turn is activated by a specific guanidine-nucleotide Genome Science and Technology, 437 Hesler Biology, Knoxville, exchange factor (GEF). -
Endomembrane System
Cell Structure & Function Cell Theory Cells are fundamental to biology Cells are the basic living units within organisms (all chemical rxns. of life take place within cells) All organisms are made of cells Single-celled organisms (bacteria/protists) Multicellular organisms (plants/animals/fungi) Cell Structure & Function Basic Aspects of Cell Structure & Function Plasma membrane Lipid bilayer Proteins DNA-containing region Cytoplasm Eukaryotic v. Prokaryotic cells Prokaryotic v. Eukaryotic Cells Two major classes of cells Prokaryotic cells (pro-, “before”) Cell lacks a “true” nucleus DNA is coiled in a nucleoid region Cells lack nuclear membrane Prokaryotic v. Eukaryotic Cells [attachment structure] [DNA location] [organelles that synthesize proteins] [enclosing the cytoplasm] [rigid structure outside the p.m. ] [jelly-like outer coating] [locomotion organelle] Prokaryotic v. Eukaryotic Cells Eukaryotic cells (eu-, “true”) Nucleus contains most of the cells nuclear material, DNA usually the largest organelle Bordered by a membranous envelope Prokaryotic v. Eukaryotic Cells Plant v. Animal Cells Both contain Plasma membrane (functions as a selective barrier) Nucleus (gene-containing organelle) Cytoplasm (region between nucleus and p.m.) Consists of organelles in a fluid (cytosol) Prokaryotic v. Eukaryotic Cells Plant v. Animal Cells Organelles Bordered by internal membranes Compartmentalizes the functions of a cell Maintains organelle’s unique environment Most organelles are found in both plant and animal cells Plant v. Animal Cells -
Structure and Activity of Lipid Bilayer Within a Membrane-Protein Transporter
Structure and activity of lipid bilayer within a membrane-protein transporter Weihua Qiua,b,1, Ziao Fuc,1, Guoyan G. Xua, Robert A. Grassuccid, Yan Zhanga, Joachim Frankd,e,2, Wayne A. Hendricksond,f,g,2, and Youzhong Guoa,b,2 aDepartment of Medicinal Chemistry, Virginia Commonwealth University, Richmond, VA 23298; bInstitute for Structural Biology, Drug Discovery and Development, Virginia Commonwealth University, Richmond, VA 23219; cIntegrated Program in Cellular, Molecular, and Biomedical Studies, Columbia University, New York, NY 10032; dDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032; eDepartment of Biological Sciences, Columbia University, New York, NY 10027; fDepartment of Physiology and Cellular Biophysics, Columbia University, New York, NY 10032; and gNew York Structural Biology Center, New York, NY 10027 Contributed by Wayne A. Hendrickson, October 15, 2018 (sent for review July 20, 2018; reviewed by Yifan Cheng and Michael C. Wiener) Membrane proteins function in native cell membranes, but extrac- 1.9 Å (30). Nevertheless, the mechanism of active transport is still tion into isolated particles is needed for many biochemical and far from clear, in part because crucial structural information re- structural analyses. Commonly used detergent-extraction meth- garding protein–lipid interaction is missing (31). The AcrB trimer ods destroy naturally associated lipid bilayers. Here, we devised a has a central cavity between transmembrane (TM) domains of the detergent-free method for preparing cell-membrane nanopar- three protomers, where a portion of lipid bilayer may exist (26). ticles to study the multidrug exporter AcrB, by cryo-EM at 3.2-Å Although detergent molecules and some alkane chains have been resolution. -
Cell and Cell Division
Cell and Cell Division Chapter 2 Lecture Outline Cell Cell membrane Nucleus: Nuclear Envelope, Nucleoplasm and Chromatin (DNA + Histones) Cytoplasm: Cytosol and Cell Organelles Cell Division Cell Cycle Mitosis: division of nucleus Cytokinesis: division of cytoplasm Cell Theory 4 basic concepts of cell theory are: Cells are the units of structure (building blocks) of all organisms Cells are the smallest unit of function in all organisms Cells originate only from pre-existing cells by cell division. All cells maintain homeostasis (internal conditions within limits) Cell Membrane All cells are covered with a thin covering of a double layer of Phospholipids and associated Proteins present here and there. Each phospholipid has a polar (hydrophilic) head and non-polar (hydrophobic) tails. In the double layer the tails face each other forming a hydrophobic barrier which keeps water dissolved contents inside. Proteins may be Intrinsic – embedded in the lipid double layer and Extrinsic associated outside the lipid double layer. Cytoplasm Cytoplasm is the living fluid part between cell membrane and nucleus. It has special structures called Cell Organelles in it. Cytosol is the liquid part of cytoplasm formed of water having dissolved or suspended substances in it. Cell Organelles are organ like each performing specific function/s but formed of molecules and membranes only (sub-cellular). Double Membrane bound Organelles: Mitochondria, Chloroplasts, Endoplasmic Reticulum, Golgi Body, and Nucleus. Single Membrane bound Organelles: Lysosomes, Peroxisomes, Vacuoles Organelles lacking any membrane: Ribosomes, Centrioles, Nucleolus Nucleus and Ribosomes 1 Genetic Control of the Cell Nucleus: is the most distinct structure inside cell visible with light microscope. -
Endomembrane System– Endoplasmic Reticulum, Golgi Apparatus, Lysosomes, Peroxisomes, Vacuoles, Vesicles
Chapter 7. The Cell: Endomembrane System– Endoplasmic Reticulum, Golgi Apparatus, Lysosomes, Peroxisomes, Vacuoles, Vesicles AP Biology 2005-2006 Overview . Play key role in synthesis (& hydrolysis) of macromolecules in cell . Various “players” modify macromolecules for various functions AP Biology 2005-2006 Endoplasmic Reticulum . Function manufactures membranes & performs many bio-synthesis functions . Structure membrane connected to nuclear envelope & extends throughout cell accounts for 50% membranes in eukaryotic cell . rough ER = bound ribosomes . smooth ER = no ribosomes AP Biology 2005-2006 Types of ER AP Biology 2005-2006 Smooth ER function . Factory processing operations many metabolic processes . synthesis & hydrolysis enzymes of smooth ER… . synthesize lipids, oils, phospholipids, steroids & sex hormones . hydrolysis (breakdown) of glycogen (in liver) into glucose . detoxify drugs & poisons (in liver) ex. alcohol & barbiturates AP Biology 2005-2006 Rough ER function . Produce proteins for export out of cell protein secreting cells packaged into transport vesicles for export which cells have a lot of rough ER? AP Biology 2005-2006 Membrane Factory . Synthesize membrane phospholipids build new membrane as ER membrane expands, bud off & transfer to other parts of cell that need membranes . Synthesize membrane proteins membrane bound proteins synthesized directly into membrane processing to make glycoproteins AP Biology 2005-2006 AP Biology 2005-2006 AP Biology 2005-2006 Golgi Apparatus . Function finishes, sorts, & ships cell products . “shipping & receiving department” center of manufacturing, warehousing, sorting & shipping extensive in cells specialized for secretion which cells have a lot AoP Bf iGoloogylgi? 2005-2006 Golgi Apparatus . Structure flattened membranous sacs = cisternae . look like stack of pita bread 2 sides = 2 functions . cis = receives material by fusing with vesicles = “receiving” . -
Therapeutic Nanobodies Targeting Cell Plasma Membrane Transport Proteins: a High-Risk/High-Gain Endeavor
biomolecules Review Therapeutic Nanobodies Targeting Cell Plasma Membrane Transport Proteins: A High-Risk/High-Gain Endeavor Raf Van Campenhout 1 , Serge Muyldermans 2 , Mathieu Vinken 1,†, Nick Devoogdt 3,† and Timo W.M. De Groof 3,*,† 1 Department of In Vitro Toxicology and Dermato-Cosmetology, Vrije Universiteit Brussel, Laarbeeklaan 103, 1090 Brussels, Belgium; [email protected] (R.V.C.); [email protected] (M.V.) 2 Laboratory of Cellular and Molecular Immunology, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium; [email protected] 3 In Vivo Cellular and Molecular Imaging Laboratory, Vrije Universiteit Brussel, Laarbeeklaan 103, 1090 Brussels, Belgium; [email protected] * Correspondence: [email protected]; Tel.: +32-2-6291980 † These authors share equal seniorship. Abstract: Cell plasma membrane proteins are considered as gatekeepers of the cell and play a major role in regulating various processes. Transport proteins constitute a subclass of cell plasma membrane proteins enabling the exchange of molecules and ions between the extracellular environment and the cytosol. A plethora of human pathologies are associated with the altered expression or dysfunction of cell plasma membrane transport proteins, making them interesting therapeutic drug targets. However, the search for therapeutics is challenging, since many drug candidates targeting cell plasma membrane proteins fail in (pre)clinical testing due to inadequate selectivity, specificity, potency or stability. These latter characteristics are met by nanobodies, which potentially renders them eligible therapeutics targeting cell plasma membrane proteins. Therefore, a therapeutic nanobody-based strategy seems a valid approach to target and modulate the activity of cell plasma membrane Citation: Van Campenhout, R.; transport proteins. -
Chapter 6 a Tour of the Cell
Chapter 6 A Tour of the Cell PowerPoint® Lecture Presentations for Biology Eighth Edition Neil Campbell and Jane Reece Lectures by Chris Romero, updated by Erin Barley with contributions from Joan Sharp Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings Overview: The Fundamental Units of Life • All organisms are made of cells • The cell is the simplest collection of matter that can live • Cell structure is correlated to cellular function • All cells are related by their descent from earlier cells Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings Fig. 6-1 Concept 6.1: To study cells, biologists use microscopes and the tools of biochemistry • Though usually too small to be seen by the unaided eye, cells can be complex Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings Microscopy • Scientists use microscopes to visualize cells too small to see with the naked eye • In a light microscope (LM), visible light passes through a specimen and then through glass lenses, which magnify the image Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings • The quality of an image depends on – Magnification, the ratio of an object’s image size to its real size – Resolution, the measure of the clarity of the image, or the minimum distance of two distinguishable points – Contrast, visible differences in parts of the sample Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings Fig. 6-2 10 m Human height 1 m Length -
Cytoplasmic Membrane Systems
Cytoplasmic Membrane Systems Under the light microscope, the cytoplasm of living cells appears relatively devoid of structure. Yet, even before the beginning of the twentieth century, examination of stained sections of animal tissues hinted at the existence of an extensive membrane network within the cytoplasm. It became evident from the early electron microscopic studies and the biochemical investigations that followed that the cytoplasm of eukaryotic cells was subdivided into a variety of distinct compartments bounded by membrane barriers. Just as a house or restaurant is divided into specialized rooms where different activities can take place independent of one another, the cytoplasm of a cell is divided into specialized membranous compartments for analogous reasons. 1 2 The organelles of the endomembrane system are part of a dynamic, integrated network in which materials are shuttled back and forth from one part of the cell to another. For the most part, materials are shuttled between organelles—from the Golgi complex to the plasma membrane, for example—in small, membrane-bounded transport vesicles that bud from a donor membrane compartment. When they reach their destination, the vesicles fuse with the membrane of the acceptor compartment, which receives the vesicle’s soluble cargo as well as its membranous wrapper. Repeated cycles of budding and fusion shuttle a diverse array of materials along numerous pathways that traverse the cell. 3 A biosynthetic pathway can be discerned in which proteins are synthesized in the endoplasmic reticulum, modified during passage through the Golgi complex, and transported from the Golgi complex to various destinations, such as the plasma membrane, a lysosome, or the large vacuole of a plant cell.