The Endomembrane System and Proteins
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Bacterial Cell Membrane
BACTERIAL CELL MEMBRANE Dr. Rakesh Sharda Department of Veterinary Microbiology NDVSU College of Veterinary Sc. & A.H., MHOW CYTOPLASMIC MEMBRANE ➢The cytoplasmic membrane, also called a cell membrane or plasma membrane, is about 7 nanometers (nm; 1/1,000,000,000 m) thick. ➢It lies internal to the cell wall and encloses the cytoplasm of the bacterium. ➢It is the most dynamic structure of a prokaryotic cell. Structure of cell membrane ➢The structure of bacterial plasma membrane is that of unit membrane, i.e., a fluid phospholipid bilayer, composed of phospholipids (40%) and peripheral and integral proteins (60%) molecules. ➢The phospholipids of bacterial cell membranes do not contain sterols as in eukaryotes, but instead consist of saturated or monounsaturated fatty acids (rarely, polyunsaturated fatty acids). ➢Many bacteria contain sterol-like molecules called hopanoids. ➢The hopanoids most likely stabilize the bacterial cytoplasmic membrane. ➢The phospholipids are amphoteric molecules with a polar hydrophilic glycerol "head" attached via an ester bond to two non-polar hydrophobic fatty acid tails. ➢The phospholipid bilayer is arranged such that the polar ends of the molecules form the outermost and innermost surface of the membrane while the non-polar ends form the center of the membrane Fluid mosaic model ➢The plasma membrane contains proteins, sugars, and other lipids in addition to the phospholipids. ➢The model that describes the arrangement of these substances in lipid bilayer is called the fluid mosaic model ➢Dispersed within the bilayer are various structural and enzymatic proteins, which carry out most membrane functions. ➢Some membrane proteins are located and function on one side or another of the membrane (peripheral proteins). -
A Tour of the Cell Overview
Unit 3: The Cell Name______________________ Chapter 6: A Tour of the Cell Overview 6.1 Biologists use microscopes and the tools of biochemistry to study cells The discovery and early study of cells progressed with the invention of microscopes in 1590 and their improvement in the 17th century. In a light microscope (LM), visible light passes through the specimen and then through glass lenses. ○ The lenses refract light so that the image is magnified into the eye or a camera. Microscopes vary in magnification, resolution, and contrast. ○ Magnification is the ratio of an object’s image to its real size. A light microscope can magnify effectively to about 1,000 times the real size of a specimen. ○ Resolution is a measure of image clarity. It is the minimum distance two points can be separated and still be distinguished as two separate points. The minimum resolution of an LM is about 200 nanometers (nm), the size of a small bacterium. ○ Contrast accentuates differences in parts of the sample. It can be improved by staining or labeling of cell components so they stand out. Although an LM can resolve individual cells, it cannot resolve much of the internal anatomy, especially the organelles, membrane-enclosed structures within eukaryotic cells. The size range of cells 1 To resolve smaller structures, scientists use an electron microscope (EM), which focuses a beam of electrons through the specimen or onto its surface. ○ Theoretically, the resolution of a modern EM could reach 0.002 nm, but the practical limit is closer to about 2 nm. Scanning electron microscopes (SEMs) are useful for studying the surface structure or topography of a specimen. -
Cell Wall Ribosomes Nucleus Chloroplast Cytoplasm
Cell Wall Ribosomes Nucleus Nickname: Protector Nickname: Protein Maker Nickname: Brain The cell wall is the outer covering of a Plant cell. It is Ribosomes read the recipe from the The nucleus is the largest organelle in a cell. The a strong and stiff and made of DNA and use this recipe to make nucleus directs all activity in the cell. It also controls cellulose. It supports and protects the plant cell by proteins. The nucleus tells the the growth and reproduction of the cell. holding it upright. It ribosomes which proteins to make. In humans, the nucleus contains 46 chromosomes allows water, oxygen and carbon dioxide to pass in out They are found in both plant and which are the instructions for all the activities in your of plant cell. animal cells. In a cell they can be found cell and body. floating around in the cytoplasm or attached to the endoplasmic reticulum. Chloroplast Cytoplasm Endoplasmic Reticulum Nickname: Oven Nickname: Gel Nickname: Highway Chloroplasts are oval structures that that contain a green Cytoplasm is the gel like fluid inside a The endoplasmic reticulum (ER) is the transportation pigment called chlorophyll. This allows plants to make cell. The organelles are floating around in center for the cell. The ER is like the conveyor belt, you their own food through the process of photosynthesis. this fluid. would see at a supermarket, except instead of moving your groceries it moves proteins from one part of the cell Chloroplasts are necessary for photosynthesis, the food to another. The Endoplasmic Reticulum looks like a making process, to occur. -
Reflux of Endoplasmic Reticulum Proteins to the Cytosol Yields Inactivation of Tumor Suppressors
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.13.038935; this version posted April 13, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Reflux of Endoplasmic Reticulum proteins to the cytosol yields inactivation of tumor suppressors Daria Sicari1,2, Raphael Pineau1,2, Pierre-Jean Le Reste1,2,3, Luc Negroni4,5,6,7, Sophie Chat8, Aiman Mohtar9, Daniel Thomas8, Reynald Gillet8, M. Ted Hupp9,10, Eric Chevet1,2* and Aeid Igbaria1,2,11* 1Inserm U1242, University of Rennes, Rennes, France. 2Centre de lutte contre le cancer Eugène Marquis, Rennes, France. 3Neurosurgery Dept, University Hospital of Rennes, 35000 Rennes, France. 4Institut de Génétique et de Biologie Moléculaire et Cellulaire, 67404 Illkirch, France. 5Centre National de la Recherche Scientifique, UMR7104, 67404 Illkirch, France. 6Institut National de la Santé et de la Recherche Médicale, U1258, 67404 Illkirch, France. 7Université de Strasbourg, 67404 Illkirch, France. 8Univ. Rennes, CNRS, Institut de Génétique et Développement de Rennes (IGDR) UMR6290, 35000 Rennes, France. 9Edinburgh Cancer Research Centre at the Institute of Genetics and Molecular Medicine, Edinburgh University, Edinburgh, UK. 10International Centre for Cancer Vaccine Science, Gdansk, Poland. 11Department of Life Sciences, Ben-Gurion University of the Negev, Beer Sheva 8410501, Israel. *Correspondence: [email protected], or [email protected] ABSTRACT: In the past decades many studies reported Endoplasmic Reticulum (ER) resident proteins to localize to the cytosol but the mechanisms by which this occurs and whether these proteins exert cytosolic functions remain unknown. We found that select ER luminal proteins accumulate in the cytosol of glioblastoma cells isolated from mouse and human tumors. -
Vesicle Traffic in the Endomembrane System: a Tale of Cops, Rabs and Snares Andreas Nebenführ
507 Vesicle traffic in the endomembrane system: a tale of COPs, Rabs and SNAREs Andreas Nebenführ Recent years have seen remarkable progress in our contrast, mammalian cells have an intermediate recycling understanding of the endomembrane system of plants. A large compartment between the ER and the Golgi, the vesiculo- number of genes and proteins that are involved in membrane tubular cluster (VTC), that does not exist in plants. exchange between the different compartments of this system have been identified on the basis of their similarity to animal The transport of proteins and membranes between the and yeast homologs. These proteins indicate that the different compartments of the endomembrane system is endomembrane system in plants functions in essentially the mediated by small carriers, the transport vesicles. The same way as those in other eukaryotes. However, a growing basic mechanisms involved in membrane-exchange reactions number of examples demonstrate that the dynamic interplay appear to be the same, irrespective of the organelles between membrane-exchange proteins can be regulated involved [2]. The initial step involves the formation of a differently in plant cells. Novel tools and a better understanding proteinaceous membrane coat that plays a two-fold role. of the molecular effects of the inhibitor brefeldin A are helping First, coat proteins deform the membrane so as to form a to unravel these plant-specific adaptations. bud and eventually a vesicle, and second, they are involved in cargo selection. The assembly of the coat is Addresses controlled by a small GTPase of the Ras superfamily, University of Tennessee, Department of Botany and School of which in turn is activated by a specific guanidine-nucleotide Genome Science and Technology, 437 Hesler Biology, Knoxville, exchange factor (GEF). -
ER-Phagy at a Glance Paolo Grumati1,*, Ivan Dikic1,2,‡ and Alexandra Stolz2,*
© 2018. Published by The Company of Biologists Ltd | Journal of Cell Science (2018) 131, jcs217364. doi:10.1242/jcs.217364 CELL SCIENCE AT A GLANCE ER-phagy at a glance Paolo Grumati1,*, Ivan Dikic1,2,‡ and Alexandra Stolz2,* ABSTRACT function in response to ER stress signals. This task sharing reflects Selective autophagy represents the major quality control mechanism the complexity of the ER in terms of biological functions and that ensures proper turnover of exhausted or harmful organelles, morphology. In this Cell Science at a Glance article and the among them the endoplasmic reticulum (ER), which is fragmented accompanying poster, we summarize the most recent findings and delivered to the lysosome for degradation via a specific type of about ER-phagy in yeast and in mammalian cells. autophagy called ER-phagy. The recent discovery of ER-resident KEY WORDS: Autophagy, CCPG1, FAM134B, RTN3, SEC62, proteins that bind to mammalian Atg8 proteins has revealed that the Endoplasmic reticulum selective elimination of ER involves different receptors that are specific for different ER subdomains or ER stresses. FAM134B (also known as RETREG1) and RTN3 are reticulon-type proteins that are Introduction able to remodel the ER network and ensure the basal membrane The endoplasmic reticulum (ER) is the largest membrane-bound turnover. SEC62 and CCPG1 are transmembrane ER receptors that organelle in eukaryotic cells. Its complex morphology, which involves sheets, tubules and matrices (Chen et al., 2013; Friedman and Voeltz, 2011; Nixon-Abell et al., 2016), mirrors its diverse roles 1Institute of Biochemistry II, Goethe University Frankfurt - Medical Faculty, in a variety of physiological processes including autophagy University Hospital, 60590 Frankfurt am Main, Germany. -
Endomembrane System
Cell Structure & Function Cell Theory Cells are fundamental to biology Cells are the basic living units within organisms (all chemical rxns. of life take place within cells) All organisms are made of cells Single-celled organisms (bacteria/protists) Multicellular organisms (plants/animals/fungi) Cell Structure & Function Basic Aspects of Cell Structure & Function Plasma membrane Lipid bilayer Proteins DNA-containing region Cytoplasm Eukaryotic v. Prokaryotic cells Prokaryotic v. Eukaryotic Cells Two major classes of cells Prokaryotic cells (pro-, “before”) Cell lacks a “true” nucleus DNA is coiled in a nucleoid region Cells lack nuclear membrane Prokaryotic v. Eukaryotic Cells [attachment structure] [DNA location] [organelles that synthesize proteins] [enclosing the cytoplasm] [rigid structure outside the p.m. ] [jelly-like outer coating] [locomotion organelle] Prokaryotic v. Eukaryotic Cells Eukaryotic cells (eu-, “true”) Nucleus contains most of the cells nuclear material, DNA usually the largest organelle Bordered by a membranous envelope Prokaryotic v. Eukaryotic Cells Plant v. Animal Cells Both contain Plasma membrane (functions as a selective barrier) Nucleus (gene-containing organelle) Cytoplasm (region between nucleus and p.m.) Consists of organelles in a fluid (cytosol) Prokaryotic v. Eukaryotic Cells Plant v. Animal Cells Organelles Bordered by internal membranes Compartmentalizes the functions of a cell Maintains organelle’s unique environment Most organelles are found in both plant and animal cells Plant v. Animal Cells -
ER-Phagy and Its Role in ER Homeostasis in Plants
plants Review ER-Phagy and Its Role in ER Homeostasis in Plants Yan Bao 1,2,* and Diane C. Bassham 1,* 1 Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA 2 Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA * Correspondence: [email protected] (Y.B.); [email protected] (D.C.B.) Received: 19 November 2020; Accepted: 11 December 2020; Published: 14 December 2020 Abstract: The endoplasmic reticulum (ER) is the largest continuous membrane-bound cellular organelle and plays a central role in the biosynthesis of lipids and proteins and their distribution to other organelles. Autophagy is a conserved process that is required for recycling unwanted cellular components. Recent studies have implicated the ER as a membrane source for the formation of autophagosomes, vesicles that transport material to the vacuole during autophagy. When unfolded proteins accumulate in the ER and/or the ER lipid bilayer is disrupted, a condition known as ER stress results. During ER stress, ER membranes can also be engulfed through autophagy in a process termed ER-phagy. An interplay between ER stress responses and autophagy thus maintains the functions of the ER to allow cellular survival. In this review, we discuss recent progress in understanding ER-phagy in plants, including identification of regulatory factors and selective autophagy receptors. We also identify key unanswered questions in plant ER-phagy for future study. Keywords: autophagy; endoplasmic reticulum; ER stress; ER-phagy; unfolded protein response 1. Introduction Plants live in a world of ever-changing conditions; for survival, they need to adapt to the challenges of their surroundings to balance growth and stress responses [1,2]. -
And Cytosolic Proteases Endoplasmic Reticulum Aminopeptidase 1
Processing of a Class I-Restricted Epitope from Tyrosinase Requires Peptide N -Glycanase and the Cooperative Action of Endoplasmic Reticulum Aminopeptidase 1 This information is current as and Cytosolic Proteases of September 28, 2021. Michelle L. Altrich-VanLith, Marina Ostankovitch, Joy M. Polefrone, Claudio A. Mosse, Jeffrey Shabanowitz, Donald F. Hunt and Victor H. Engelhard J Immunol 2006; 177:5440-5450; ; Downloaded from doi: 10.4049/jimmunol.177.8.5440 http://www.jimmunol.org/content/177/8/5440 http://www.jimmunol.org/ References This article cites 45 articles, 25 of which you can access for free at: http://www.jimmunol.org/content/177/8/5440.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision by guest on September 28, 2021 • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2006 by The American Association of Immunologists All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Processing of a Class I-Restricted Epitope from Tyrosinase Requires Peptide N-Glycanase and the Cooperative Action of Endoplasmic Reticulum Aminopeptidase 1 and Cytosolic Proteases1 Michelle L. -
A Signal-Anchor Sequence Stimulates Signal Recognition Particle Binding to Ribosomes from Inside the Exit Tunnel
A signal-anchor sequence stimulates signal recognition particle binding to ribosomes from inside the exit tunnel Uta Berndta,b,1, Stefan Oellerera,b,c,1, Ying Zhanga,b,c, Arthur E. Johnsond, and Sabine Rosperta,b,2 aInstitute of Biochemistry and Molecular Biology and bCenter for Biological Signalling Studies, University of Freiburg, Stefan-Meier-Strasse 17, D-79104 Freiburg, Germany; cFakulta¨t fu¨ r Biologie, University of Freiburg, Scha¨nzlestrasse 1, D-79104 Freiburg, Germany; and dDepartment of Molecular and Cellular Medicine, Texas A&M Health Science Center, 116 Reynolds Medical Building, College Station, TX 77843 Edited by Arthur Horwich, Yale University School of Medicine, New Haven, CT, and approved December 15, 2008 (received for review August 29, 2008) Sorting of eukaryotic membrane and secretory proteins depends direct interaction between SRP and the nascent chain. Previous on recognition of ribosome-bound nascent chain signal sequences studies have addressed the question of whether or not specific by the signal recognition particle (SRP). The current model suggests amino acid sequences of segments inside the tunnel can further that the SRP cycle is initiated when a signal sequence emerges from the affinity of SRP for RNCs (9, 10). Because signal sequences the ribosomal tunnel and binds to SRP. Then elongation is slowed would be prime candidates for such effects, this possibility was until the SRP-bound ribosome–nascent chain complex (RNC) is tested in the eukaryotic system by using RNCs carrying prep- targeted to the SRP receptor in the endoplasmic reticulum (ER) rolactin, a secreted protein with a cleavable signal sequence. membrane. The RNC is then transferred to the translocon, SRP is However, when nascent preprolactin was too short to exit the released, and translation resumes. -
Cell and Cell Division
Cell and Cell Division Chapter 2 Lecture Outline Cell Cell membrane Nucleus: Nuclear Envelope, Nucleoplasm and Chromatin (DNA + Histones) Cytoplasm: Cytosol and Cell Organelles Cell Division Cell Cycle Mitosis: division of nucleus Cytokinesis: division of cytoplasm Cell Theory 4 basic concepts of cell theory are: Cells are the units of structure (building blocks) of all organisms Cells are the smallest unit of function in all organisms Cells originate only from pre-existing cells by cell division. All cells maintain homeostasis (internal conditions within limits) Cell Membrane All cells are covered with a thin covering of a double layer of Phospholipids and associated Proteins present here and there. Each phospholipid has a polar (hydrophilic) head and non-polar (hydrophobic) tails. In the double layer the tails face each other forming a hydrophobic barrier which keeps water dissolved contents inside. Proteins may be Intrinsic – embedded in the lipid double layer and Extrinsic associated outside the lipid double layer. Cytoplasm Cytoplasm is the living fluid part between cell membrane and nucleus. It has special structures called Cell Organelles in it. Cytosol is the liquid part of cytoplasm formed of water having dissolved or suspended substances in it. Cell Organelles are organ like each performing specific function/s but formed of molecules and membranes only (sub-cellular). Double Membrane bound Organelles: Mitochondria, Chloroplasts, Endoplasmic Reticulum, Golgi Body, and Nucleus. Single Membrane bound Organelles: Lysosomes, Peroxisomes, Vacuoles Organelles lacking any membrane: Ribosomes, Centrioles, Nucleolus Nucleus and Ribosomes 1 Genetic Control of the Cell Nucleus: is the most distinct structure inside cell visible with light microscope. -
CELL SNAP Information
CELL SNAP Information Chromosome Lysosome Smooth endoplasmic reticulum Mitochondrion Nucleus DNA Centriole Ribosome Rough endoplasmic reticulum Golgi apparatus Nucleus The nucleus is the largest of the organelles and is at the centre of the cell. It is the storage site of the cell’s DNA. Here DNA is copied and processed into RNA by transcription. This is the first step in the process of protein synthesis. The nucleus is surrounded by a double membrane system called the nuclear envelope that contains holes known as nuclear pores. These pores allow large molecules such as proteins to pass in and out of the nucleus. Inside the nucleus is a round structure known as the nucleolus. This is where ribosomes are formed. Chromosomes Chromosomes are thread-like structures, made of DNA wrapped around a scaffold of proteins. Each human cell contains 46 chromosomes. 23 are passed down from the mother and 23 are passed down from the father. Each chromosome contains specific regions of DNA, known as genes. These are sections of DNA that carry information required to make a molecule, usually a protein. A human has between 23,000 and 25,000 genes. We talk about genes having different characteristics. For instance, if you hear about ‘genes for eye colour’, it means that these genes code for protein pigments in the iris of each of our eyes. 1/3 yourgenome.org CELL SNAP Information DNA DNA, or deoxyribonucleic acid, is a molecule that contains our genetic instructions. It is made up of four chemical bases: adenine (A), cytosine (C), guanine (G) and thymine (T).