Cell and Cell Division
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Mobile Genetic Elements in Streptococci
Curr. Issues Mol. Biol. (2019) 32: 123-166. DOI: https://dx.doi.org/10.21775/cimb.032.123 Mobile Genetic Elements in Streptococci Miao Lu#, Tao Gong#, Anqi Zhang, Boyu Tang, Jiamin Chen, Zhong Zhang, Yuqing Li*, Xuedong Zhou* State Key Laboratory of Oral Diseases, National Clinical Research Center for Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu, PR China. #Miao Lu and Tao Gong contributed equally to this work. *Address correspondence to: [email protected], [email protected] Abstract Streptococci are a group of Gram-positive bacteria belonging to the family Streptococcaceae, which are responsible of multiple diseases. Some of these species can cause invasive infection that may result in life-threatening illness. Moreover, antibiotic-resistant bacteria are considerably increasing, thus imposing a global consideration. One of the main causes of this resistance is the horizontal gene transfer (HGT), associated to gene transfer agents including transposons, integrons, plasmids and bacteriophages. These agents, which are called mobile genetic elements (MGEs), encode proteins able to mediate DNA movements. This review briefly describes MGEs in streptococci, focusing on their structure and properties related to HGT and antibiotic resistance. caister.com/cimb 123 Curr. Issues Mol. Biol. (2019) Vol. 32 Mobile Genetic Elements Lu et al Introduction Streptococci are a group of Gram-positive bacteria widely distributed across human and animals. Unlike the Staphylococcus species, streptococci are catalase negative and are subclassified into the three subspecies alpha, beta and gamma according to the partial, complete or absent hemolysis induced, respectively. The beta hemolytic streptococci species are further classified by the cell wall carbohydrate composition (Lancefield, 1933) and according to human diseases in Lancefield groups A, B, C and G. -
Transposable Elements Drive Reorganisation of 3D Chromatin
bioRxiv preprint doi: https://doi.org/10.1101/523712; this version posted January 17, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Transposable elements drive reorganisation of 3D chromatin during early embryogenesis Kai Kruse1, Noelia Díaz1, §, Rocio Enriquez-Gasca1, §, Xavier Gaume2, 4, Maria-Elena Torres-Padilla2, 3 and Juan M. Vaquerizas1, * 1. Max Planck Institute for Molecular Biomedicine, Roentgenstrasse 20, 48149 Muenster, Germany. 2. Institute of Epigenetics and Stem Cells (IES), Helmholtz Zentrum München, Marchioninistraße 25, 81377 Munich, Germany. 3. Faculty of Biology, Ludwig Maximilians Universität, Großhaderner Str. 2, 82152 Planegg-Martinsried, Germany. 4. Present address: Cancer Research Center of Lyon, 28 Rue Laennec, Lyon 69008, France. §. These authors have contributed equally to this work. *. Correspondence to J.M.V. ([email protected], @vaquerizasjm) Keywords: Chromosome conformation capture; low-input Hi-C; early embryonic development; totipotency; transposable elements; MERVL; TAds; 2-cell embryo; 2-cell-like cells; zygotic genome activation; CAF-1; dux. Transposable elements are abundant genetic components of eukaryotic genomes with important regulatory features affecting transcription, splicing, and recombination, among others. Here we demonstrate that the Murine Endogenous Retroviral Element (MuERV-L/MERVL) family of transposable elements drives the 3D reorganisation of the genome in the early mouse embryo. By generating Hi-C data in 2-cell-like cells, we show that MERLV elements promote the formation of insulating domain boundaries through- out the genome in vivo and in vitro. -
Review Cell Division from a Genetic Perspective
REVIEW CELL DIVISION FROM A GENETIC PERSPECTIVE LELAND H. HARTWELL From the Department of Genetics, University of Washington, Seattle, Washington 98195 Recently, a number of laboratories have begun to incubation at the restrictive condition for that study mutant cells that are defective in specific mutation, whereas mutants with defects in one of stages of the eukaryotic cell cycle. The long-range the continuously required functions will arrest at goals of this work are to identify the genes that the restrictive temperature with cells at a variety code for division-related proteins, to define the of positions in the cell cycle. roles that these gene products play and to investi- Classes of mutants may be distinguished from gate the hierarchies of order that assure their one another and the roles of their products delim- coordinated activity. It is my intent in this brief ited by determining the stage-specific event at review to discuss the strategies employed in this which they arrest. It is convenient to have a genetic approach and to enumerate some of the designation for the first landmark of the cell cycle new conclusions that have come to light. A recent that is blocked in a particular mutant, and I shall review on the genetics of meiosis (2) complements call it the diagnostic landmark for that mutant. this review on mitosis. Mutants of Saccharomyces cerevisiae have been identified that have diagnostic landmarks at spin- MUTANTS dle pole body (SPB) duplication, SPB separation, Mutations that inactivate gene products essential initiation of DNA synthesis, DNA replication, for division would be lethal. -
A Tour of the Cell Overview
Unit 3: The Cell Name______________________ Chapter 6: A Tour of the Cell Overview 6.1 Biologists use microscopes and the tools of biochemistry to study cells The discovery and early study of cells progressed with the invention of microscopes in 1590 and their improvement in the 17th century. In a light microscope (LM), visible light passes through the specimen and then through glass lenses. ○ The lenses refract light so that the image is magnified into the eye or a camera. Microscopes vary in magnification, resolution, and contrast. ○ Magnification is the ratio of an object’s image to its real size. A light microscope can magnify effectively to about 1,000 times the real size of a specimen. ○ Resolution is a measure of image clarity. It is the minimum distance two points can be separated and still be distinguished as two separate points. The minimum resolution of an LM is about 200 nanometers (nm), the size of a small bacterium. ○ Contrast accentuates differences in parts of the sample. It can be improved by staining or labeling of cell components so they stand out. Although an LM can resolve individual cells, it cannot resolve much of the internal anatomy, especially the organelles, membrane-enclosed structures within eukaryotic cells. The size range of cells 1 To resolve smaller structures, scientists use an electron microscope (EM), which focuses a beam of electrons through the specimen or onto its surface. ○ Theoretically, the resolution of a modern EM could reach 0.002 nm, but the practical limit is closer to about 2 nm. Scanning electron microscopes (SEMs) are useful for studying the surface structure or topography of a specimen. -
The Endomembrane System and Proteins
Chapter 4 | Cell Structure 121 Endosymbiosis We have mentioned that both mitochondria and chloroplasts contain DNA and ribosomes. Have you wondered why? Strong evidence points to endosymbiosis as the explanation. Symbiosis is a relationship in which organisms from two separate species depend on each other for their survival. Endosymbiosis (endo- = “within”) is a mutually beneficial relationship in which one organism lives inside the other. Endosymbiotic relationships abound in nature. We have already mentioned that microbes that produce vitamin K live inside the human gut. This relationship is beneficial for us because we are unable to synthesize vitamin K. It is also beneficial for the microbes because they are protected from other organisms and from drying out, and they receive abundant food from the environment of the large intestine. Scientists have long noticed that bacteria, mitochondria, and chloroplasts are similar in size. We also know that bacteria have DNA and ribosomes, just like mitochondria and chloroplasts. Scientists believe that host cells and bacteria formed an endosymbiotic relationship when the host cells ingested both aerobic and autotrophic bacteria (cyanobacteria) but did not destroy them. Through many millions of years of evolution, these ingested bacteria became more specialized in their functions, with the aerobic bacteria becoming mitochondria and the autotrophic bacteria becoming chloroplasts. The Central Vacuole Previously, we mentioned vacuoles as essential components of plant cells. If you look at Figure 4.8b, you will see that plant cells each have a large central vacuole that occupies most of the cell's area. The central vacuole plays a key role in regulating the cell’s concentration of water in changing environmental conditions. -
Cell Division and Cycle
Name: _______________________ Date:_____________ Period_________ Subject: ________ Cell Division and Cycle Read the phase to answer the questions 1 through 10. Living organisms are constantly making new cells. They make new cells in order to grow and also to replace old dead cells. The process by which new cells are made is called cell division. Cell division is occurring all the time. Around two trillion cell divisions occur in the average human body every day! Types of Cell Division There are three main types of cell division: binary fission, mitosis, and meiosis. Binary fission is used by simple organisms like bacteria. More complex organisms gain new cells by either mitosis or meiosis. Mitosis Mitosis is used when a cell needs to be replicated into exact copies of itself. Everything in the cell is duplicated. The two new cells have the same DNA, functions, and genetic code. The original cell is called the mother cell and the two new cells are called daughter cells. The full process, or cycle, of mitosis is described in more detail below. Examples of cells that are produced through mitosis include cells in the human body for the skin, blood, and muscles. Cell Cycle for Mitosis Cells go through different phases called the cell cycle. The "normal" state of a cell is called the "interphase". The genetic material is duplicated during the interphase stage of the cell. When a cell gets the signal that it is to duplicate, it will enter the first state of mitosis called the "prophase". Prophase - During this phase the chromatin condenses into chromosomes and the nuclear membrane and nucleolus break down. -
Mitosis Vs. Meiosis
Mitosis vs. Meiosis In order for organisms to continue growing and/or replace cells that are dead or beyond repair, cells must replicate, or make identical copies of themselves. In order to do this and maintain the proper number of chromosomes, the cells of eukaryotes must undergo mitosis to divide up their DNA. The dividing of the DNA ensures that both the “old” cell (parent cell) and the “new” cells (daughter cells) have the same genetic makeup and both will be diploid, or containing the same number of chromosomes as the parent cell. For reproduction of an organism to occur, the original parent cell will undergo Meiosis to create 4 new daughter cells with a slightly different genetic makeup in order to ensure genetic diversity when fertilization occurs. The four daughter cells will be haploid, or containing half the number of chromosomes as the parent cell. The difference between the two processes is that mitosis occurs in non-reproductive cells, or somatic cells, and meiosis occurs in the cells that participate in sexual reproduction, or germ cells. The Somatic Cell Cycle (Mitosis) The somatic cell cycle consists of 3 phases: interphase, m phase, and cytokinesis. 1. Interphase: Interphase is considered the non-dividing phase of the cell cycle. It is not a part of the actual process of mitosis, but it readies the cell for mitosis. It is made up of 3 sub-phases: • G1 Phase: In G1, the cell is growing. In most organisms, the majority of the cell’s life span is spent in G1. • S Phase: In each human somatic cell, there are 23 pairs of chromosomes; one chromosome comes from the mother and one comes from the father. -
Cell Growth and Reproduction Lesson 6.2: Chromosomes and DNA Replication
Chapter 6: Cell Growth and Reproduction Lesson 6.2: Chromosomes and DNA Replication Cell reproduction involves a series of steps that always begin with the processes of interphase. During interphase the cell’s genetic information which is stored in its nucleus in the form of chromatin, composed of both mitotic and interphase chromosomes molecules of protein complexes and DNA strands that are loosely coiled winds tightly to be replicated. It is estimated that the DNA in human cells consists of approximately three billion nucleotides. If a DNA molecule was stretched out it would measure over 20 miles in length and all of it is stored in the microscopic nuclei of human cells. This lesson will help you to understand how such an enormous amount of DNA is coiled and packed in a complicated yet organized manner. During cell reproduction as a cell gets ready to divide the DNA coils even more into tightly compact structures. Lesson Objectives • Describe the coiled structure of chromosomes. • Understand that chromosomes are coiled structures made of DNA and proteins. They form after DNA replicates and are the form in which the genetic material goes through cell division. • Discover that DNA replication is semi-conservative; half of the parent DNA molecule is conserved in each of the two daughter DNA molecules. • Outline discoveries that led to knowledge of DNA’s structure and function. • Examine the processes of DNA replication. Vocabulary • centromere • double helix • Chargaff’s rules • histones • chromatid • nucleosomes • chromatin • semi-conservative DNA replication • chromosome • sister chromatids • DNA replication • transformation Introduction In eukaryotic cells, the nucleus divides before the cell itself divides. -
Vesicle Traffic in the Endomembrane System: a Tale of Cops, Rabs and Snares Andreas Nebenführ
507 Vesicle traffic in the endomembrane system: a tale of COPs, Rabs and SNAREs Andreas Nebenführ Recent years have seen remarkable progress in our contrast, mammalian cells have an intermediate recycling understanding of the endomembrane system of plants. A large compartment between the ER and the Golgi, the vesiculo- number of genes and proteins that are involved in membrane tubular cluster (VTC), that does not exist in plants. exchange between the different compartments of this system have been identified on the basis of their similarity to animal The transport of proteins and membranes between the and yeast homologs. These proteins indicate that the different compartments of the endomembrane system is endomembrane system in plants functions in essentially the mediated by small carriers, the transport vesicles. The same way as those in other eukaryotes. However, a growing basic mechanisms involved in membrane-exchange reactions number of examples demonstrate that the dynamic interplay appear to be the same, irrespective of the organelles between membrane-exchange proteins can be regulated involved [2]. The initial step involves the formation of a differently in plant cells. Novel tools and a better understanding proteinaceous membrane coat that plays a two-fold role. of the molecular effects of the inhibitor brefeldin A are helping First, coat proteins deform the membrane so as to form a to unravel these plant-specific adaptations. bud and eventually a vesicle, and second, they are involved in cargo selection. The assembly of the coat is Addresses controlled by a small GTPase of the Ras superfamily, University of Tennessee, Department of Botany and School of which in turn is activated by a specific guanidine-nucleotide Genome Science and Technology, 437 Hesler Biology, Knoxville, exchange factor (GEF). -
The Obscure World of Integrative and Mobilizable Elements Gérard Guédon, Virginie Libante, Charles Coluzzi, Sophie Payot-Lacroix, Nathalie Leblond-Bourget
The obscure world of integrative and mobilizable elements Gérard Guédon, Virginie Libante, Charles Coluzzi, Sophie Payot-Lacroix, Nathalie Leblond-Bourget To cite this version: Gérard Guédon, Virginie Libante, Charles Coluzzi, Sophie Payot-Lacroix, Nathalie Leblond-Bourget. The obscure world of integrative and mobilizable elements: Highly widespread elements that pirate bacterial conjugative systems. Genes, MDPI, 2017, 8 (11), pp.337. 10.3390/genes8110337. hal- 01686871 HAL Id: hal-01686871 https://hal.archives-ouvertes.fr/hal-01686871 Submitted on 26 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License G C A T T A C G G C A T genes Review The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems Gérard Guédon *, Virginie Libante, Charles Coluzzi, Sophie Payot and Nathalie Leblond-Bourget * ID DynAMic, Université de Lorraine, INRA, 54506 Vandœuvre-lès-Nancy, France; [email protected] (V.L.); [email protected] (C.C.); [email protected] (S.P.) * Correspondence: [email protected] (G.G.); [email protected] (N.L.-B.); Tel.: +33-037-274-5142 (G.G.); +33-037-274-5146 (N.L.-B.) Received: 12 October 2017; Accepted: 15 November 2017; Published: 22 November 2017 Abstract: Conjugation is a key mechanism of bacterial evolution that involves mobile genetic elements. -
U6-Life-Cycle-Background.Pdf
UNIT 6: LIFE CYCLE CORAL REEF ECOLOGY CURRICULUM This unit is part of the Coral Reef Ecology Curriculum that was developed by the Education Department of the Khaled bin Sultan Living Oceans Foundation. It has been designed for secondary school students, but can be adapted for other uses. The entire curriculum can be found online at lof.org/CoralReefCurriculum. Author and Design/Layout: Amy Heemsoth, Director of Education Editorial assistance provided by: Andrew Bruckner, Ken Marks, Melinda Campbell, Alexandra Dempsey, and Liz Rauer Thompson Illustrations by: Amy Heemsoth Cover Photo: ©Michele Westmorland/iLCP ©2014 Khaled bin Sultan Living Oceans Foundation. All rights reserved. Unless otherwise noted, photos are property of the Khaled bin Sultan Living Oceans Foundation. The Khaled bin Sultan Living Oceans Foundation and authors disclaim any liability for injury or damage related to the use of this curriculum. These materials may be reproduced for education purposes. When using any of the materials from this curriculum, please include the following attribution: Khaled bin Sultan Living Oceans Foundation Coral Reef Ecology Curriculum www.lof.org The Khaled bin Sultan Living Oceans Foundation (KSLOF) was incorporated in California as a 501(c)(3), public benefit, Private Operating Foundation in September 2000. The Living Oceans Foundation is dedicated to providing science-based solutions to protect and restore ocean health through research, outreach, and education. The educational goals of the Khaled bin Sultan Living Oceans Foundation and -
Coordinating DNA Replication Initiation with Cell Growth
Proc. Natl. Acad. Sci. USA Vol. 93, pp. 12206-12211, October 1996 Biochemistry Coordinating DNA replication initiation with cell growth: Differential roles for DnaA and SeqA proteins (Escherichia coli/initiation mass) ERIK BOYE*t, TROND STOKKE*, NANCY KLECKNERt, AND KIRSTEN SKARSTAD* *Departments of Biophysics and Cell Biology, Institute for Cancer Research, Montebello, 0310 Oslo, Norway; and tDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138 Contributed by Nancy Kleckner, July 25, 1996 ABSTRACT We describe here the development of a new DnaA recognizes oriC specifically and, together with accessory approach to the analysis of Escherichia coli replication con- proteins, promotes the formation of an open complex which trol. Cells were grown at low growth rates, in which case the permits loading of the DnaB helicase and priming of DNA bacterial cell cycle approximates that of eukaryotic cells with replication (4). A second component, SeqA, has been identi- Gl, S, and G2 phases: cell division is followed sequentially by fied genetically as a negative modulator of the initiation a gap period without DNA replication, replication ofthe single process (5). Biochemical data suggest that SeqA mediates its chromosome, another gap period, and finally the next cell effects by binding to oriC prior to initiation (6). division. Flow cytometry of such slowly growing cells reveals The most detailed molecular models of initiation control in the timing of replication initiation as a function of cell mass. E. coli have focused on the DnaA protein. The amount of The data show that initiation is normally coupled to cell DnaA protein per origin (7), the activity of DnaA protein per physiology extremely tightly: the distribution ofindividual cell cell (8), or the concentration of DnaA (9) have been proposed masses at the time of initiation in wild-type cells is very to trigger initiation of DNA replication.