Diversification in Monkeyflowers: an Investigation of the Effects of Elevation and Floral Color in the Genus Mimulus
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Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution
Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Dr. Bruce G. Baldwin, Chair Dr. John P. Huelsenbeck Dr. Brent D. Mishler Dr. Kipling W. Will Fall 2017 Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution Copyright 2017 by William Allen Freyman Abstract Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology University of California, Berkeley Dr. Bruce G. Baldwin, Chair Key evolutionary transitions have shaped the tree of life by driving the processes of spe- ciation and extinction. This dissertation aims to advance statistical and computational ap- proaches that model the timing and nature of these transitions over evolutionary trees. These methodological developments in phylogenetic comparative biology enable formal, model- based, statistical examinations of the macroevolutionary consequences of trait evolution. Chapter 1 presents computational tools for data mining the large-scale molecular sequence datasets needed for comparative phylogenetic analyses. I describe a novel metric, the miss- ing sequence decisiveness score (MSDS), which assesses the phylogenetic decisiveness of a matrix given the pattern of missing sequence data. In Chapter 2, I introduce a class of phylogenetic models of chromosome number evolution that accommodate both anagenetic and cladogenetic change. -
Differential Regulation of Symmetry Genes and the Evolution of Floral Morphologies
Differential regulation of symmetry genes and the evolution of floral morphologies Lena C. Hileman†, Elena M. Kramer, and David A. Baum‡ Department of Organismic and Evolutionary Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138 Communicated by John F. Doebley, University of Wisconsin, Madison, WI, September 5, 2003 (received for review July 16, 2003) Shifts in flower symmetry have occurred frequently during the patterns of growth occurring on either side of the midline (Fig. diversification of angiosperms, and it is thought that such shifts 1h). The two species of Mohavea have a floral morphology that play important roles in plant–pollinator interactions. In the model is highly divergent from Antirrhinum (3), resulting in its tradi- developmental system Antirrhinum majus (snapdragon), the tional segregation as a distinct genus. Mohavea corollas, espe- closely related genes CYCLOIDEA (CYC) and DICHOTOMA (DICH) cially those of M. confertiflora, are superficially radially symmet- are needed for the development of zygomorphic flowers and the rical (actinomorphic), mainly due to distal expansion of the determination of adaxial (dorsal) identity of floral organs, includ- corolla lobes (Fig. 1a) and a higher degree of internal petal ing adaxial stamen abortion and asymmetry of adaxial petals. symmetry relative to Antirrhinum (Fig. 1 a and g). During However, it is not known whether these genes played a role in the Mohavea flower development, the lateral stamens, in addition to divergence of species differing in flower morphology and pollina- the adaxial stamen, are aborted, resulting in just two stamens at tion mode. We compared A. majus with a close relative, Mohavea flower maturity (Fig. -
IP Athos Renewable Energy Project, Plan of Development, Appendix D.2
APPENDIX D.2 Plant Survey Memorandum Athos Memo Report To: Aspen Environmental Group From: Lehong Chow, Ironwood Consulting, Inc. Date: April 3, 2019 Re: Athos Supplemental Spring 2019 Botanical Surveys This memo report presents the methods and results for supplemental botanical surveys conducted for the Athos Solar Energy Project in March 2019 and supplements the Biological Resources Technical Report (BRTR; Ironwood 2019) which reported on field surveys conducted in 2018. BACKGROUND Botanical surveys were previously conducted in the spring and fall of 2018 for the entirety of the project site for the Athos Solar Energy Project (Athos). However, due to insufficient rain, many plant species did not germinate for proper identification during 2018 spring surveys. Fall surveys in 2018 were conducted only on a reconnaissance-level due to low levels of rain. Regional winter rainfall from the two nearest weather stations showed rainfall averaging at 0.1 inches during botanical surveys conducted in 2018 (Ironwood, 2019). In addition, gen-tie alignments have changed slightly and alternatives, access roads and spur roads have been added. PURPOSE The purpose of this survey was to survey all new additions and re-survey areas of interest including public lands (limited to portions of the gen-tie segments), parcels supporting native vegetation and habitat, and windblown sandy areas where sensitive plant species may occur. The private land parcels in current or former agricultural use were not surveyed (parcel groups A, B, C, E, and part of G). METHODS Survey Areas: The area surveyed for biological resources included the entirety of gen-tie routes (including alternates), spur roads, access roads on public land, parcels supporting native vegetation (parcel groups D and F), and areas covered by windblown sand where sensitive species may occur (portion of parcel group G). -
Ghost Flower Free Ebook
FREEGHOST FLOWER EBOOK Michele Jaffe | 336 pages | 12 Apr 2012 | Little, Brown Book Group | 9781907411083 | English | London, United Kingdom YOU CAN STILL ADD MORE! White wildflowers of west and southwest USA: Mohavea confertiflora: ghost flower: Plantain family (Plantaginaceae). Cup-shaped, two-lipped flowers; white or. Monotropa uniflora, also known as ghost plant (or ghost pipe), or Indian pipe, is an herbaceous Jump to search. Not to be confused with Ghost flower. Mohavea confertiflora (ghost flower). views views. • May 24, 27 0. Share Save. 27 / 0. Jepson Herbarium. Jepson Herbarium. Mohavea Confertiflora, Ghost Flower Indian Pipe, also known as Ghost Flower and Monotropa Uniflora, is a unique and interesting plant found in shady woods that are rich in decaying plant. Check out our ghost flower selection for the very best in unique or custom, handmade pieces from our shops. Mohavea confertiflora, the ghost flower, is a plant of the family Plantaginaceae. It is a native of the Southwestern United States, southern California, and three. Ghost Flower Description. Like the snapdragon and penstemon, the ghost flower is a member of the figwort family (Scrophulariaceae). It is an erect annual which grows 4. Check out our ghost flower selection for the very best in unique or custom, handmade pieces from our shops. Activewear designed to get you into your element. Indian Pipe, also known as Ghost Flower and Monotropa Uniflora, is a unique and interesting plant found in shady woods that are rich in decaying plant. Description. Like the snapdragon and penstemon, the ghost flower is a member of the figwort family (Scrophulariaceae). -
THE JEPSON GLOBE a Newsletter from the Friends of the Jepson Herbarium
THE JEPSON GLOBE A Newsletter from the Friends of The Jepson Herbarium VOLUME 29 NUMBER 1, Spring 2019 Curator’s column: Don Kyhos’s Upcoming changes in the Con- legacy in California botany sortium of California Herbaria By Bruce G. Baldwin By Jason Alexander In early April, my Ph.D. advisor, In January, the Northern California Donald W. Kyhos (UC Davis) turns 90, Botanists Association hosted their 9th fittingly during one of the California Botanical Symposium in Chico, Cali- desert’s most spectacular blooms in fornia. The Consortium of California recent years. Don’s many contributions Herbaria (CCH) was invited to present to desert botany and plant evolution on upcoming changes. The CCH be- in general are well worth celebrating gan as a data aggregator for California here for their critical importance to our vascular plant specimen data and that understanding of the California flora. remains its primary purpose to date. Those old enough to have used Munz’s From 2003 until 2017, the CCH grew A California Flora may recall seeing in size to over 2.2 million specimen re- the abundant references to Raven and cords from 36 institutions. Responding Kyhos’s chromosome numbers, which to requests from participants to display reflect a partnership between Don and specimen data from all groups of plants Peter Raven that yielded a tremendous Rudi Schmid at Antelope Valley Califor- and fungi, from all locations (including body of cytogenetic information about nia Poppy Reserve on 7 April 2003. Photo those outside California), we have de- our native plants. Don’s talents as a by Ray Cranfill. -
Plants of the Sacony Marsh and Trail, Kutztown, PA- Phase II
Plants of the Sacony Creek Trail, Kutztown, PA – Phase I Wildflowers Anemone, Canada Anemone canadensis Aster, Crooked Stem Aster prenanthoides Aster, False Boltonia asteroids Aster, New England Aster novae angliae Aster, White Wood Aster divaricatus Avens, White Geum canadense Beardtongue, Foxglove Penstemon digitalis Beardtongue, Small’s Penstemon smallii Bee Balm Monarda didyma Bee Balm, Spotted Monarda punctata Bergamot, Wild Monarda fistulosa Bishop’s Cap Mitella diphylla Bitter Cress, Pennsylvania Cardamine pensylvanica Bittersweet, Oriental Celastrus orbiculatus Blazing Star Liatris spicata Bleeding Heart Dicentra spectabilis Bleeding Heart, Fringed Dicentra eximia Bloodroot Sanguinara Canadensis Blue-Eyed Grass Sisyrinchium montanum Blue-Eyed Grass, Eastern Sisyrinchium atlanticum Boneset Eupatorium perfoliatum Buttercup, Hispid Ranunculus hispidus Buttercup, Hispid Ranunculus hispidus Camas, Eastern Camassia scilloides Campion, Starry Silene stellata Cardinal Flower Lobelia cardinalis Carolina pea shrub Thermopsis caroliniani Carrion flower Smilax herbacea Carrot, Wild Daucus carota Chickweed Stellaria media Cleavers Galium aparine Clover, Least Hop rifolium dubium Clover, White Trifolium repens Clover, White Trifolium repens Cohosh, Black Cimicifuga racemosa Columbine, Eastern Aquilegia canadensis Coneflower, Green-Headed Rudbeckia laciniata Coneflower, Thin-Leaf Rudbeckia triloba Coreopsis, Tall Coreopsis tripteris Crowfoot, Bristly Ranunculus pensylvanicus Culver’s Root Veronicastrum virginicum Cup Plant Silphium perfoliatum -
Herbivory Across Vascular Plants Macroecological And
Downloaded from rspb.royalsocietypublishing.org on May 30, 2014 Macroecological and macroevolutionary patterns of leaf herbivory across vascular plants Martin M. Turcotte, T. Jonathan Davies, Christina J. M. Thomsen and Marc T. J. Johnson Proc. R. Soc. B 2014 281, 20140555, published 28 May 2014 Supplementary data "Data Supplement" http://rspb.royalsocietypublishing.org/content/suppl/2014/05/27/rspb.2014.0555.DC1.h tml References This article cites 51 articles, 18 of which can be accessed free http://rspb.royalsocietypublishing.org/content/281/1787/20140555.full.html#ref-list-1 Subject collections Articles on similar topics can be found in the following collections ecology (1660 articles) evolution (1777 articles) Receive free email alerts when new articles cite this article - sign up in the box at the top Email alerting service right-hand corner of the article or click here To subscribe to Proc. R. Soc. B go to: http://rspb.royalsocietypublishing.org/subscriptions Downloaded from rspb.royalsocietypublishing.org on May 30, 2014 Macroecological and macroevolutionary patterns of leaf herbivory across vascular plants 1 2 1,3 rspb.royalsocietypublishing.org Martin M. Turcotte , T. Jonathan Davies , Christina J. M. Thomsen and Marc T. J. Johnson1 1Department of Biology, University of Toronto-Mississauga, Mississauga, Ontario, Canada L5L 1C6 2Department of Biology, McGill University, Montreal, Quebec, Canada H3A 1B1 3 Research Department of Biology, University of Ottawa, Ontario, Canada K1N 6N5 The consumption of plants by animals underlies important evolutionary and Cite this article: Turcotte MM, Davies TJ, ecological processes in nature. Arthropod herbivory evolved approximately Thomsen CJM, Johnson MTJ. 2014 415 Ma and the ensuing coevolution between plants and herbivores is cred- Macroecological and macroevolutionary ited with generating much of the macroscopic diversity on the Earth. -
Bob Allen's OCCNPS Presentation About Plant Families.Pages
Stigma How to identify flowering plants Style Pistil Bob Allen, California Native Plant Society, OC chapter, occnps.org Ovary Must-knows • Flower, fruit, & seed • Leaf parts, shapes, & divisions Petal (Corolla) Anther Stamen Filament Sepal (Calyx) Nectary Receptacle Stalk Major local groups ©Bob Allen 2017 Apr 18 Page !1 of !6 A Botanist’s Dozen Local Families Legend: * = non-native; (*) = some native species, some non-native species; ☠ = poisonous Eudicots • Leaf venation branched; veins net-like • Leaf bases not sheathed (sheathed only in Apiaceae) • Cotyledons 2 per seed • Floral parts in four’s or five’s Pollen apertures 3 or more per pollen grain Petal tips often • curled inward • Central taproot persists 2 styles atop a flat disk Apiaceae - Carrot & Parsley Family • Herbaceous annuals & perennials, geophytes, woody perennials, & creepers 5 stamens • Stout taproot in most • Leaf bases sheathed • Leaves alternate (rarely opposite), dissected to compound Style “horns” • Flowers in umbels, often then in a secondary umbel • Sepals, petals, stamens 5 • Ovary inferior, with 2 chambers; styles 2; fruit a dry schizocarp Often • CA: Apiastrum, Yabea, Apium*, Berula, Bowlesia, Cicuta, Conium*☠ , Daucus(*), vertically Eryngium, Foeniculum, Torilis*, Perideridia, Osmorhiza, Lomatium, Sanicula, Tauschia ribbed • Cult: Apium, Carum, Daucus, Petroselinum Asteraceae - Sunflower Family • Inflorescence a head: flowers subtended by an involucre of bracts (phyllaries) • Calyx modified into a pappus • Corolla of 5 fused petals, radial or bilateral, sometimes both kinds in same head • Radial (disk) corollas rotate to salverform • Bilateral (ligulate) corollas strap-shaped • Stamens 5, filaments fused to corolla, anthers fused into a tube surrounding the style • Ovary inferior, style 1, with 2 style branches • Fruit a cypsela (but sometimes called an achene) • The largest family of flowering plants in CA (ca. -
Amargosa River Expert Bioblitz April 7-9 , 2017 Final Report
Amargosa River Expert BioBlitz April 7-9th, 2017 Final Report Photo credit: Janine Knapp Please cite this document as: Parker, S.S., B.S. Cohen, N. Fraga, B. Brown, J. Cole, W. Chatfield-Taylor, K. Guadalupe, G.B. Pauly, D. Cooper, and M. Ordeñana. 2017. Amargosa River Expert BioBlitz. Unpublished Report. The Nature Conservancy. Los Angeles, California. 50 pp. ii Report Contributors: Sophie S. Parker The Nature Conservancy [email protected] Brian S. Cohen The Nature Conservancy [email protected] Naomi Fraga Rancho Santa Ana Botanic Garden [email protected] Brian Brown Natural History Museum of Los Angeles County [email protected] Jeffrey Cole Pasadena City College [email protected] Will Chatfield-Taylor [email protected] Kevin Guadalupe Nevada Department of Wildlife [email protected] Gregory B. Pauly Natural History Museum of Los Angeles County [email protected] Daniel Cooper Cooper Ecological Monitoring, Inc. [email protected] Miguel Ordeñana Natural History Museum of Los Angeles County [email protected] iii Acknowledgements We thank our agency partners at the Bureau of Land Management, particularly C. Otahal, who co-organized the Amargosa River BioBlitz. We also thank the Amargosa Conservancy for supporting the collection efforts, and private land owners B. Brown of China Ranch and S. Sorrells of Shoshone Village for hosting volunteers on their property. iv Table of Contents I. Introduction and Context: Amargosa Watershed Conservation .............................................. 1 II. What is an Expert BioBlitz? ................................................................................................... -
Chemical Constituents from Striga Asiatica and Its Chemotaxonomic Study
(This is a sample cover image for this issue. The actual cover is not yet available at this time.) This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and education use, including for instruction at the authors institution and sharing with colleagues. Other uses, including reproduction and distribution, or selling or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most cases authors are permitted to post their version of the article (e.g. in Word or Tex form) to their personal website or institutional repository. Authors requiring further information regarding Elsevier’s archiving and manuscript policies are encouraged to visit: http://www.elsevier.com/copyright Author's personal copy Biochemical Systematics and Ecology 48 (2013) 100–106 Contents lists available at SciVerse ScienceDirect Biochemical Systematics and Ecology journal homepage: www.elsevier.com/locate/biochemsyseco Chemical constituents from Striga asiatica and its chemotaxonomic study Wen Huang a, Shi-Biao Wu b, Ye-Ling Wang a, Zhi-Yong Guo a, Edward J. Kennelly a,b, Chun-Lin Long a,c,* a College of Life and Environmental Sciences, Minzu University of China, 27 Zhong-guan-cun South Ave, Beijing 100081, China b Department of Biological Sciences, Lehman College and The Graduate Center, City University of New York, 250 Bedford Park Boulevard West, Bronx, NY 10468, United States c Kunming Institute of Botany, Chinese Academy of Sciences, 132 Lanhei Road, Kunming 650201, China article info abstract Article history: Six flavonoids, diosmetin (1), apigenin (2), luteolin (3), chrysoeriol (4), apigenin-7-O- Received 12 July 2012 glucuronide (5) and acacetin (6), two caffeic acid sugar esters, verbascoside (7) and Accepted 28 October 2012 isoverbascoside (8), as well as one norsesquiterpene, blumenol A (9) were isolated or Available online detected from the EtOAc and n-BuOH extract of the whole plants of Striga asiatica. -
Redefining Phrymaceae: the Placement of Mimulus, Tribe Mimuleae, and Phryma1
American Journal of Botany 89(7): 1093±1102. 2002. REDEFINING PHRYMACEAE: THE PLACEMENT OF MIMULUS, TRIBE MIMULEAE, AND PHRYMA1 PAUL M. BEARDSLEY2 AND RICHARD G. OLMSTEAD Department of Botany, Box 355325, University of Washington, Seattle, Washington 98195 USA Chloroplast trnL/F and nuclear ribosomal ITS and ETS sequence data were used to analyze phylogenetic relationships among members of tribe Mimuleae (Scrophulariaceae) and other closely related families in Lamiales. The results of these analyses led to the following conclusions. (1) The Australian genera Glossostigma and Peplidium and the taxonomically isolated Phryma join four genera of tribe Mimuleae to form a well-supported clade that is distinct from other families in the Lamiales. We refer to that clade as the subfamily Phrymoideae. (2) The genera Mazus and Lancea (tribe Mimuleae) together form a well-supported clade that we recognize as the subfamily Mazoideae. Mazoideae is weakly supported as sister to Phrymoideae. We assign Mazoideae and Phrymoideae to a rede®ned family Phrymaceae. (3) Mimulus is not monophyletic, because members of at least six other genera have been derived from within it. In light of the molecular evidence, it is clear that species of Phrymaceae (about 190 species) have undergone two geograph- ically distinct radiations; one in western North America (about 130 species) and another in Australia (about 30 species). Phylogenetic interpretations of morphological evolution and biogeographical patterns are discussed. Key words: ETS; ITS; Mimuleae; Mimulus; Phryma; Phrymaceae; Scrophulariaceae; trnL/F. Species in the genus Mimulus have become model systems Mimulus, though in subsequent works, Pennell placed Mimu- for the study of evolutionary processes in nature. -
A Taxonomic Conspectus of Phrymaceae: a Narrowed Circumscriptions for Mimulus , New and Resurrected Genera, and New Names and Combinations
Barker, W.R., G.L. Nesom, P.M. Beardsley, and N.S. Fraga. 2012. A taxonomic conspectus of Phrymaceae: A narrowed circumscriptions for Mimulus , new and resurrected genera, and new names and combinations. Phytoneuron 2012-39: 1–60. Published 16 May 2012. ISSN 2153 733X A TAXONOMIC CONSPECTUS OF PHRYMACEAE: A NARROWED CIRCUMSCRIPTION FOR MIMULUS, NEW AND RESURRECTED GENERA, AND NEW NAMES AND COMBINATIONS W.R. (B ILL ) BARKER State Herbarium of South Australia, Kent Town SA 5071, AUSTRALIA; and Australian Centre for Evolutionary Biology and Biodiversity University of Adelaide Adelaide SA 5000, AUSTRALIA [email protected] GUY L. NESOM 2925 Hartwood Drive Fort Worth, Texas 76109, USA [email protected] PAUL M. BEARDSLEY Biological Sciences Department California State Polytechnic University Pomona, California 91768, USA [email protected] NAOMI S. FRAGA Rancho Santa Ana Botanic Garden Claremont, California 91711-3157, USA [email protected] ABSTRACT A revised taxonomic classification of Phrymaceae down to species level is presented, based on molecular-phylogenetic and morpho-taxonomic studies, setting a framework for ongoing work. In the concept adopted, the family includes 188 species divided into 13 genera. All species as currently understood are listed and assigned to genera and sections which in several cases have new circumscriptions requiring many new combinations. Four main clades are recognized. Clade A. An Asian-African-Australasian-centered clade of 7 genera: Mimulus L. sensu stricto (7 species) of North America, Asia to Africa, and Australasia is sister to an Australian-centered group that comprises Elacholoma (2 species), Glossostigma (5 species), Microcarpaea (2 species), Peplidium (4 species), Uvedalia (2 species) and a new monotypic genus Thyridia , described here.