Chapter 3 ECOLOGY and MORPHOLOGY
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Poplars and Willows: Trees for Society and the Environment / Edited by J.G
Poplars and Willows Trees for Society and the Environment This volume is respectfully dedicated to the memory of Victor Steenackers. Vic, as he was known to his friends, was born in Weelde, Belgium, in 1928. His life was devoted to his family – his wife, Joanna, his 9 children and his 23 grandchildren. His career was devoted to the study and improve- ment of poplars, particularly through poplar breeding. As Director of the Poplar Research Institute at Geraardsbergen, Belgium, he pursued a lifelong scientific interest in poplars and encouraged others to share his passion. As a member of the Executive Committee of the International Poplar Commission for many years, and as its Chair from 1988 to 2000, he was a much-loved mentor and powerful advocate, spreading scientific knowledge of poplars and willows worldwide throughout the many member countries of the IPC. This book is in many ways part of the legacy of Vic Steenackers, many of its contributing authors having learned from his guidance and dedication. Vic Steenackers passed away at Aalst, Belgium, in August 2010, but his work is carried on by others, including mem- bers of his family. Poplars and Willows Trees for Society and the Environment Edited by J.G. Isebrands Environmental Forestry Consultants LLC, New London, Wisconsin, USA and J. Richardson Poplar Council of Canada, Ottawa, Ontario, Canada Published by The Food and Agriculture Organization of the United Nations and CABI CABI is a trading name of CAB International CABI CABI Nosworthy Way 38 Chauncey Street Wallingford Suite 1002 Oxfordshire OX10 8DE Boston, MA 02111 UK USA Tel: +44 (0)1491 832111 Tel: +1 800 552 3083 (toll free) Fax: +44 (0)1491 833508 Tel: +1 (0)617 395 4051 E-mail: [email protected] E-mail: [email protected] Website: www.cabi.org © FAO, 2014 FAO encourages the use, reproduction and dissemination of material in this information product. -
Climatic Change Can Influence Species Diversity Patterns and Potential Habitats of Salicaceae Plants in China
Article Climatic Change Can Influence Species Diversity Patterns and Potential Habitats of Salicaceae Plants in China WenQing Li 1, MingMing Shi 1, Yuan Huang 2, KaiYun Chen 1, Hang Sun 1 and JiaHui Chen 1,* 1 CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China; [email protected] (W.L.); [email protected] (M.S.); [email protected] (K.C.); [email protected] (H.S.) 2 School of Life Sciences, Yunnan Normal University, Kunming, Yunnan 650092, China; [email protected] * Correspondence: [email protected] (J.C.) Received: 18 January 2019; Accepted: 25 February 2019; Published: 1 March 2019 Abstract: Salicaceae is a family of temperate woody plants in the Northern Hemisphere that are highly valued, both ecologically and economically. China contains the highest species diversity of these plants. Despite their widespread human use, how the species diversity patterns of Salicaceae plants formed remains mostly unknown, and these may be significantly affected by global climate warming. Using past, present, and future environmental data and 2673 georeferenced specimen records, we first simulated the dynamic changes in suitable habitats and population structures of Salicaceae. Based on this, we next identified those areas at high risk of habitat loss and population declines under different climate change scenarios/years. We also mapped the patterns of species diversity by constructing niche models for 215 Salicaceae species, and assessed the driving factors affecting their current diversity patterns. The niche models showed Salicaceae family underwent extensive population expansion during the Last Inter Glacial period but retreated to lower latitudes during and since the period of the Last Glacial Maximum. -
Poplar Chap 1.Indd
Populus: A Premier Pioneer System for Plant Genomics 1 1 Populus: A Premier Pioneer System for Plant Genomics Stephen P. DiFazio,1,a,* Gancho T. Slavov 1,b and Chandrashekhar P. Joshi 2 ABSTRACT The genus Populus has emerged as one of the premier systems for studying multiple aspects of tree biology, combining diverse ecological characteristics, a suite of hybridization complexes in natural systems, an extensive toolbox of genetic and genomic tools, and biological characteristics that facilitate experimental manipulation. Here we review some of the salient biological characteristics that have made this genus such a popular object of study. We begin with the taxonomic status of Populus, which is now a subject of ongoing debate, though it is becoming increasingly clear that molecular phylogenies are accumulating. We also cover some of the life history traits that characterize the genus, including the pioneer habit, long-distance pollen and seed dispersal, and extensive vegetative propagation. In keeping with the focus of this book, we highlight the genetic diversity of the genus, including patterns of differentiation among populations, inbreeding, nucleotide diversity, and linkage disequilibrium for species from the major commercially- important sections of the genus. We conclude with an overview of the extent and rapid spread of global Populus culture, which is a testimony to the growing economic importance of this fascinating genus. Keywords: Populus, SNP, population structure, linkage disequilibrium, taxonomy, hybridization 1Department of Biology, West Virginia University, Morgantown, West Virginia 26506-6057, USA; ae-mail: [email protected] be-mail: [email protected] 2 School of Forest Resources and Environmental Science, Michigan Technological University, 1400 Townsend Drive, Houghton, MI 49931, USA; e-mail: [email protected] *Corresponding author 2 Genetics, Genomics and Breeding of Poplar 1.1 Introduction The genus Populus is full of contrasts and surprises, which combine to make it one of the most interesting and widely-studied model organisms. -
Assembly and Comparative Analysis of Complete Mitochondrial Genome Sequence of an Economic Plant Salix Suchowensis
Assembly and comparative analysis of complete mitochondrial genome sequence of an economic plant Salix suchowensis Ning Ye1, Xuelin Wang1, Juan Li2, Changwei Bi3, Yiqing Xu1, Dongyang Wu4 and Qiaolin Ye1 1 College of Information Science and Technology, Nanjing Forestry University, Nanjing, Jiangsu, China 2 School of Electrical and Automatic Engineering, Nanjing Normal University, Nanjing, Jiangsu, China 3 School of Biological Science and Medical Engineering, Southeast University, Nanjing, Jiangsu, China 4 College of Forest Resources and Environment, Nanjing Forestry University, Nanjing, Jiangsu, China ABSTRACT Willow is a widely used dioecious woody plant of Salicaceae family in China. Due to their high biomass yields, willows are promising sources for bioenergy crops. In this study, we assembled the complete mitochondrial (mt) genome sequence of S. suchowensis with the length of 644,437 bp using Roche-454 GS FLX Titanium sequencing technologies. Base composition of the S. suchowensis mt genome is A (27.43%), T (27.59%), C (22.34%), and G (22.64%), which shows a prevalent GC content with that of other angiosperms. This long circular mt genome encodes 58 unique genes (32 protein-coding genes, 23 tRNA genes and 3 rRNA genes), and 9 of the 32 protein-coding genes contain 17 introns. Through the phylogenetic analysis of 35 species based on 23 protein-coding genes, it is supported that Salix as a sister to Populus. With the detailed phylogenetic information and the identification of phylogenetic position, some ribosomal protein genes and succinate dehydrogenase genes are found usually lost during evolution. As a native shrub willow species, this worthwhile research of S. -
Investigation of the Genomics of Gender Regulation in Populus
INVESTIGATION OF THE GENOMICS OF GENDER REGULATION IN POPULUS TRICHOCARPA by Nyssa A. Temmel B.Sc. (Hons) University of Victoria, 2002 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES (Botany) THE UNIVERSITY OF BRITISH COLUMBIA (Vancouver) December 2011 © Nyssa A. Temmel, 2011 Abstract This thesis reports the findings of four projects conducted to study the genomics of gender regulation in Populus trichocarpa. Sex-linked markers previously discovered in Salix vimilanis were tested to determine if they were also sex-linked in other Salix species and P. trichocarpa. It was found that the DNA sequence of the SCAR 354 marker, and its position at the 5’ end of a gene encoding an Ssu72-like protein, was conserved with some SFP variability in species of Salix and P. trichocarpa. While this marker may be useful for phylogenetic or population studies in Salix, this marker was not sex-linked in the species investigated in this study. An investigation of genes located on the telomeric end of chromosome 19, the putative sex chromosome in P. trichocarpa, was conducted to look for gender-biased SNPs that would indicate recombination suppression in the region on a sex locus. A large variability in the number of SNPs was observed in the gene sequences studied, but no SNPs that segregated with gender were discovered so a genetic marker that could be used to sex P. trichocarpa individuals of unknown gender could not be developed. Using a microarray approach, gender-biased gene-expression was studied in leaf tissue of P. -
Analyzing and Characterizing the Chloroplast Genome of Salix Wilsonii
Hindawi BioMed Research International Volume 2019, Article ID 5190425, 14 pages https://doi.org/10.1155/2019/5190425 Research Article Analyzing and Characterizing the Chloroplast Genome of Salix wilsonii Yingnan Chen ,NanHu , and Huaitong Wu Key Laboratory of Forest Genetics & Biotechnology of Educational Department of China and of Jiangsu Province, College of Forestry, Nanjing Forestry University, Nanjing 210037, China Correspondence should be addressed to Yingnan Chen; [email protected] Received 2 April 2019; Accepted 13 June 2019; Published 15 July 2019 Academic Editor: Yu-Chang Tyan Copyright © 2019 Yingnan Chen et al. Tis is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Salix wilsonii is an important ornamental willow tree widely distributed in China. In this study, an integrated circular chloroplast genome was reconstructed for S. wilsonii based on the chloroplast reads screened from the whole-genome sequencing data generated with the PacBio RSII platform. Te obtained pseudomolecule was 155,750 bp long and had a typical quadripartite structure, comprising a large single copy region (LSC, 84,638 bp) and a small single copy region (SSC, 16,282 bp) separated by two inverted repeat regions (IR, 27,415 bp). Te S. wilsonii chloroplast genome encoded 115 unique genes, including four rRNA genes, 30 tRNA genes, 78 protein-coding genes, and three pseudogenes. Repetitive sequence analysis identifed 32 tandem repeats, 22 forward repeats, two reverse repeats, and fve palindromic repeats. Additionally, a total of 118 perfect microsatellites were detected, with mononucleotide repeats being the most common (89.83%). -
Forestry Department Food and Agriculture Organization of the United Nations
Forestry Department Food and Agriculture Organization of the United Nations International Poplar Commission Thematic Papers POPLARS AND WILLOWS IN THE WORLD CHAPTER 2 POPLARS AND WILLOWS OF THE WORLD, WITH EMPHASIS ON SILVICULTURALLY IMPORTANT SPECIES Donald I. Dickmann, Julia Kuzovkina October 2008 Forest Resources Development Service Working Paper IPC/9-2 Forest Management Division FAO, Rome, Italy Forestry Department FAO/IPC Poplars and Willows in the World Chapter 2 Poplars and Willows of the World, with Emphasis on Silviculturally Important Species by Donald I. Dickmann Department of Forestry Michigan State University East Lansing, MI 48824-1222 USA Julia Kuzovkina Department of Plant Science The University of Connecticut Storrs, CT 06269-4067 USA Contact information for D. I. Dickmann: Email [email protected] Phone 517 353 5199 Fax 517 432 1143 “…while this planet has gone cycling on according to the fixed laws of gravity, from so simple a beginning endless forms most beautiful and most wonderful have been, and are being, evolved.” Charles Darwin The Origin of Species, 1859 If any family of woody plants affirms Darwin’s musing, it is the Salicaceae. This family—division Magnoliophyta, class Magnoliopsida (dicots), subclass Dilleniidae, order Salicales—includes the familiar genera Populus (poplars, cottonwoods, and aspens) and Salix (willows, sallows, and osiers)1. Together Populus and Salix comprise 400 to 500 species (Table 2-1), although there is no agreement among taxonomists as to the exact number. Added to those numbers are countless subspecies, varieties, hybrids, and cultivars that together encompass a diversity of morphological forms that, although bordering on the incomprehensible, is beautiful and wonderful nonetheless. -
Pharmaceutical Botany for International Students
PHARMACEUTICAL BOTANY FOR INTERNATIONAL STUDENTS Minsk BSMU 2017 МИНИСТЕРСТВО ЗДРАВООХРАНЕНИЯ РЕСПУБЛИКИ БЕЛАРУСЬ БЕЛОРУССКИЙ ГОСУДАРСТВЕННЫЙ МЕДИЦИНСКИЙ УНИВЕРСИТЕТ КАФЕДРА ОРГАНИЗАЦИИ ФАРМАЦИИ ФАРМАЦЕВТИЧЕСКАЯ БОТАНИКА ДЛЯ ИНОСТРАННЫХ СТУДЕНТОВ PHARMACEUTICAL BOTANY FOR INTERNATIONAL STUDENTS Учебно-методическое пособие Минск БГМУ 2017 2 УДК 615.1:581(075.8)-054.6 ББК 52.81(81.2 Англ-923) Ф24 Рекомендовано Научно-методическим советом университета в качестве учебно-методического пособия 21.12.2016 г., протокол № 4 А в т о р ы: проф. Н. С. Гурина; доц. О. А. Кузнецова; доц. О. В. Мушкина; ст. преп. М. В. Волочник Р е ц е н з е н т ы: канд. с.-х. наук, доц., зав. каф. ботаники Белорусского государственного университета В. Д. Поликсенова; канд. мед. наук, доц. каф. биологии Белорусского государственного медицинского университета Л. М. Сычик Фармацевтическая ботаника для иностранных студентов = Pharmaceutical Ф24 botany for international students : учеб.-метод. пособие / Н. С. Гурина [и др.]. – Минск : БГМУ, 2017. – 112 с. ISBN 978-985-567-648-6. Содержит теоретический материал по фармацевтической ботанике, схемы, рисунки и представ- ляет собой краткий курс лекций. Предназначено для иностранных студентов 1–2-го курсов, обучающихся на английском языке. УДК 615.1:581(075.8)-054.6 ББК 52.81(81.2 Англ-923) ISBN 978-985-567-648-6 © УО «Белорусский государственный медицинский университет», 2017 3 LECTURE № 1 BOTANY AS A GENERAL DISCIPLINE. BASIS OF CLASSIFICATION OF LIVING ORGANISMS. ALGAE Pharmaceutical Botany is a general discipline, which is forming theoretical knowledge and practical skills which are necessary in a future pharmaceutist’s working. Botany, as a science, studies external and internal plant’s structure, features of processes of vital activities, classification, intercommunication with environment conditions, spread in nature, meaning in the nature and human life. -
Chosenia: an Amazing Tree of Northeast Asia
Chosenia: An Amazing Tree of Northeast Asia Irina Kadis any travelers to Northeast Siberia The entire transformation from tiny seedlings with fond memories of the to majestic 60-foot trees on fertile soil normally youngMreturn chosenia groves they have seen. takes only sixty to seventy years. By then, the These riverside communities harbor many total organic mass of the grove may equal the showy flowering herbs that stand out brightly amount accumulated by any other taiga forest against the otherwise monotonous background in one hundred fifty to two hundred years. of the Siberian taiga. Even more striking are the Chosenia arbutifolia (Pall.) A. Skv., one of the groves of mature chosenias with trees of a colos- fastest-growing trees of Northeast Asia, is close- sal size that is unusual not only for Yakutia, the ly related to the willows. Indeed, it has often coldest place on the continent of Eurasia, but been mistaken for a large willow even by experi- even for lushly productive regions like Manchu- enced botanists. However, a close look at its cat- ria. The chosenia groves miraculously emerge on kins and flowers reveals clear differences from lifeless river pebbles in just ten to twelve years. willows. The nectaries, or glands-structures Chosenia seeds typically germinate on fresh pebble deposits such as these along a tributary of the Kamchatka River. 9 that are found in any willow flower-are missing. The sta- mens, pistils, and bracts look different from those found in the flowers of both the willow and poplar: the male flower of cho- senia has five stamens hiding under the bract, partially fused with it in the lower filaments; and the female flower has two styles, each with a two-lobed stigma. -
Evolution of Catkins: Inflorescence Morphology of Selected Salicaceae
ORIGINAL RESEARCH published: 07 December 2015 doi: 10.3389/fpls.2015.01030 Evolution of Catkins: Inflorescence Morphology of Selected Salicaceae in an Evolutionary and Developmental Context Quentin C. B. Cronk1*, Isabelle Needham2 and Paula J. Rudall2 1 Department of Botany, University of British Columbia, Vancouver, BC, Canada, 2 Royal Botanic Gardens, Kew, London, UK Poplars (Populus sp.) and willows (Salix sp.) are well known woody plants common throughout the northern hemisphere, both with fully sequenced genomes. They bear compact unisexual inflorescences known as “catkins.” Closely related genera of the “salicoid clade” within the family Salicaceae include the Asian genera Bennettiodendron, Idesia, Itoa, Poliothyrsis, and Carrierea and the Central American genera Olmediella and Macrohasseltia. Like willow and poplar, most of these genera are dioecious, but unlike willow and poplar they generally have loosely branched panicles rather than catkins, and Edited by: less highly reduced flowers. However, the early developing inflorescences of Carrierea Verónica S. Di Stilio, and Idesia show similarities to catkins which suggest possible pathways by which the University of Washington, USA salicoid catkin may have evolved. Reviewed by: Jill Christine Preston, Keywords: inflorescence evolution, heterochrony, synorganization, preformation, dioecy, floral reduction, University of Vermont, USA inflorescence architecture, genome-enabled model system Madelaine Elisabeth Bartlett, University of Massachusetts Amherst, USA INTRODUCTION *Correspondence: QuentinC.B.Cronk The Catkin and its Recurrent Evolution [email protected] The catkin is a type of compact or string-like inflorescence characterized by a single relatively Specialty section: stout axis on which unisexual sessile or subsessile apetalous flowers are clustered in a spiral or This article was submitted to whorled arrangement. -
Salix): Does This Result from a Trans-Specific Selective Sweep?
Molecular Ecology (2014) doi: 10.1111/mec.12837 Understanding the spectacular failure of DNA barcoding in willows (Salix): Does this result from a trans-specific selective sweep? DIANA M. PERCY,*† GEORGE W. ARGUS,‡ QUENTIN C. CRONK,*† ARON J. FAZEKAS,§ PRASAD R. KESANAKURTI,§ KEVIN S. BURGESS,¶ BRIAN C. HUSBAND,§ STEVEN G. NEWMASTER,§ SPENCER C.H. BARRETT** and SEAN W. GRAHAM*† *Department of Botany, University of British Columbia, Vancouver, BC, Canada V6T 1Z4, †Biodiversity Research Centre, University of British Columbia, Vancouver, BC, Canada V6T 1Z4, ‡Canadian Museum of Nature, PO Box 3443 Stn “D”, Ottawa, ON, Canada K1P 6P4, §Department of Integrative Biology, University of Guelph, Guelph, ON, Canada N1G 2W1, ¶Department of Biology, Columbus State University, Columbus, GA 31907-5645, USA, **Department of Ecology & Evolutionary Biology, University of Toronto, 25 Willcocks Street, Toronto, ON, Canada M5S 3B2 Abstract Willows (Salix: Salicaceae) form a major ecological component of Holarctic floras and consequently are an obvious target for a DNA-based identification system. We sur- veyed two to seven plastid genome regions (~3.8 kb; ~3% of the genome) from 71 Salix species across all five subgenera, to assess their performance as DNA barcode markers. Although Salix has a relatively high level of interspecific hybridization, this may not sufficiently explain the near complete failure of barcoding that we observed: only one species had a unique barcode. We recovered 39 unique haplotypes, from more than 500 specimens, that could be partitioned into six major haplotype groups. A unique variant of group I (haplotype 1*) was shared by 53 species in three of five Salix subgenera. -
Arctic Willow Salix Arctica Ssp. Crassijulis: Cold Resistant Willow of the Tundra
Arctic Willow Salix arctica ssp. crassijulis: Cold Resistant Willow of the Tundra Ty Richards, Student (Plant Science Major – Department of Horticultural Studies @ UMN Twin Cities) February 27th, 2019 EXECUTIVE SUMMARY Salix arctica Pall ssp. crassijulis, the Arctic Willow, is a low growing shrub that has potential use as a new floricultural crop. Salix arctica ssp. crassijulis is truly a one of a kind species of plant that can tolerate extreme weathers and soil conditions and its hardiness is nothing of the ordinary for it has adapted to one of the harshest climates in the world, the frozen tundra. Its shallow roots allow it to withstand these conditions and the warmth within the miniscule roots are held proportionally allow it to easily hold the heated resources. The subspecies can be found across the northern tiers of the planet and can be grown in the climates of nearly any greenhouse if the conditions are met and even in some states such as Minnesota if proper care is kept. Since this willow has short, creeping or horizontal growth it would be a perfect trailing foliage crop for hanging baskets, containers, or in hardscapes on ledges. The white flowers in the spring are attractive and the seeds, at dispersal, form soft white, inflorescences with ornamental value. There are no boundaries to this plant and could very soon be creeping into your yard and the market soon as the properties that make the plant what it is will be discovered by the average grower and plant breeder. Perhaps one boundary to this plant is too much heat so growers in the south must be cautious growing the crop due to its ability to stand cold temperatures but never has had a chance to go through generations in the warm climate areas.