Climatic Change Can Influence Species Diversity Patterns and Potential Habitats of Salicaceae Plants in China
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Poplars and Willows: Trees for Society and the Environment / Edited by J.G
Poplars and Willows Trees for Society and the Environment This volume is respectfully dedicated to the memory of Victor Steenackers. Vic, as he was known to his friends, was born in Weelde, Belgium, in 1928. His life was devoted to his family – his wife, Joanna, his 9 children and his 23 grandchildren. His career was devoted to the study and improve- ment of poplars, particularly through poplar breeding. As Director of the Poplar Research Institute at Geraardsbergen, Belgium, he pursued a lifelong scientific interest in poplars and encouraged others to share his passion. As a member of the Executive Committee of the International Poplar Commission for many years, and as its Chair from 1988 to 2000, he was a much-loved mentor and powerful advocate, spreading scientific knowledge of poplars and willows worldwide throughout the many member countries of the IPC. This book is in many ways part of the legacy of Vic Steenackers, many of its contributing authors having learned from his guidance and dedication. Vic Steenackers passed away at Aalst, Belgium, in August 2010, but his work is carried on by others, including mem- bers of his family. Poplars and Willows Trees for Society and the Environment Edited by J.G. Isebrands Environmental Forestry Consultants LLC, New London, Wisconsin, USA and J. Richardson Poplar Council of Canada, Ottawa, Ontario, Canada Published by The Food and Agriculture Organization of the United Nations and CABI CABI is a trading name of CAB International CABI CABI Nosworthy Way 38 Chauncey Street Wallingford Suite 1002 Oxfordshire OX10 8DE Boston, MA 02111 UK USA Tel: +44 (0)1491 832111 Tel: +1 800 552 3083 (toll free) Fax: +44 (0)1491 833508 Tel: +1 (0)617 395 4051 E-mail: [email protected] E-mail: [email protected] Website: www.cabi.org © FAO, 2014 FAO encourages the use, reproduction and dissemination of material in this information product. -
Poplar Chap 1.Indd
Populus: A Premier Pioneer System for Plant Genomics 1 1 Populus: A Premier Pioneer System for Plant Genomics Stephen P. DiFazio,1,a,* Gancho T. Slavov 1,b and Chandrashekhar P. Joshi 2 ABSTRACT The genus Populus has emerged as one of the premier systems for studying multiple aspects of tree biology, combining diverse ecological characteristics, a suite of hybridization complexes in natural systems, an extensive toolbox of genetic and genomic tools, and biological characteristics that facilitate experimental manipulation. Here we review some of the salient biological characteristics that have made this genus such a popular object of study. We begin with the taxonomic status of Populus, which is now a subject of ongoing debate, though it is becoming increasingly clear that molecular phylogenies are accumulating. We also cover some of the life history traits that characterize the genus, including the pioneer habit, long-distance pollen and seed dispersal, and extensive vegetative propagation. In keeping with the focus of this book, we highlight the genetic diversity of the genus, including patterns of differentiation among populations, inbreeding, nucleotide diversity, and linkage disequilibrium for species from the major commercially- important sections of the genus. We conclude with an overview of the extent and rapid spread of global Populus culture, which is a testimony to the growing economic importance of this fascinating genus. Keywords: Populus, SNP, population structure, linkage disequilibrium, taxonomy, hybridization 1Department of Biology, West Virginia University, Morgantown, West Virginia 26506-6057, USA; ae-mail: [email protected] be-mail: [email protected] 2 School of Forest Resources and Environmental Science, Michigan Technological University, 1400 Townsend Drive, Houghton, MI 49931, USA; e-mail: [email protected] *Corresponding author 2 Genetics, Genomics and Breeding of Poplar 1.1 Introduction The genus Populus is full of contrasts and surprises, which combine to make it one of the most interesting and widely-studied model organisms. -
Berberine: Botanical Occurrence, Traditional Uses, Extraction Methods, and Relevance in Cardiovascular, Metabolic, Hepatic, and Renal Disorders
REVIEW published: 21 August 2018 doi: 10.3389/fphar.2018.00557 Berberine: Botanical Occurrence, Traditional Uses, Extraction Methods, and Relevance in Cardiovascular, Metabolic, Hepatic, and Renal Disorders Maria A. Neag 1, Andrei Mocan 2*, Javier Echeverría 3, Raluca M. Pop 1, Corina I. Bocsan 1, Gianina Cri¸san 2 and Anca D. Buzoianu 1 1 Department of Pharmacology, Toxicology and Clinical Pharmacology, “Iuliu Hatieganu” University of Medicine and Pharmacy, Cluj-Napoca, Romania, 2 Department of Pharmaceutical Botany, “Iuliu Hatieganu” University of Medicine and Pharmacy, Cluj-Napoca, Romania, 3 Department of Environmental Sciences, Universidad de Santiago de Chile, Santiago de Chile, Chile Edited by: Berberine-containing plants have been traditionally used in different parts of the world for Anna Karolina Kiss, the treatment of inflammatory disorders, skin diseases, wound healing, reducing fevers, Medical University of Warsaw, Poland affections of eyes, treatment of tumors, digestive and respiratory diseases, and microbial Reviewed by: Pinarosa Avato, pathologies. The physico-chemical properties of berberine contribute to the high diversity Università degli Studi di Bari Aldo of extraction and detection methods. Considering its particularities this review describes Moro, Italy various methods mentioned in the literature so far with reference to the most important Sylwia Zielinska, Wroclaw Medical University, Poland factors influencing berberine extraction. Further, the common separation and detection *Correspondence: methods like thin layer chromatography, high performance liquid chromatography, and Andrei Mocan mass spectrometry are discussed in order to give a complex overview of the existing [email protected] methods. Additionally, many clinical and experimental studies suggest that berberine Specialty section: has several pharmacological properties, such as immunomodulatory, antioxidative, This article was submitted to cardioprotective, hepatoprotective, and renoprotective effects. -
Female Gametophyte Development in Sinopodophyllum Hexandrum (Berberidaceae) and Its Evolutionary Significance
Ann. Bot. Fennici 49: 55–63 ISSN 0003-3847 (print) ISSN 1797-2442 (online) Helsinki 26 April 2012 © Finnish Zoological and Botanical Publishing Board 2012 Female gametophyte development in Sinopodophyllum hexandrum (Berberidaceae) and its evolutionary significance Heng-Yu Huang & Li Li* Key Laboratory of Plant Resources Conservation and Utilization (Jishou University), College of Hunan Province, Jishou, Hunan, 416000, China (*corresponding author’s e-mail: [email protected]) Received 11 Mar. 2011, final version received 30 Mar. 2011, accepted 19 Apr. 2011 Huang, H. Y. & Li, L. 2012: Female gametophyte development in Sinopodophyllum hexandrum (Berberidaceae) and its evolutionary significance. — Ann. Bot. Fennici 49: 55–63. Female gametophyte development of Sinopodophyllum hexandrum (Berberidaceae) was studied on materials from different altitudes. The plant displays diversity in the megagametogenesis, and two categories of four female-gametophyte development models are observed, including the monosporous Polygonum-type, a new Sinopodo- phyllum type (and its two variants), which is intermediate between the monosporic and bisporic types. The results suggest that the Polygonum type is more primitive than the other types, and that the Sinopodophyllum type is intermediate between the Poly- gonum type and the Allium type. The diversity in the female gametophyte develop- ment in S. hexandrum reveals megagametogenesis may be influenced by altitude and be of great significance to its adaptability and evolution. In the Podophyllum group, Sinopodophyllum is more advanced than Diphylleia and Dysosma, where the female gametophyte development conforms to the Polygonum type. In addition, the results of this study directly provide evidence that the disporous Allium-type is derived from the monosporous Polygonum-type. -
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LiuBot. et Bull. al. —Acad. Species Sin. (2002) pairs of 43: the 147-154 Podophyllum group 147 Molecular evidence for the sister relationship of the eastern Asia-North American intercontinental species pair in the Podophyllum group (Berberidaceae) Jianquan Liu1,2,*, Zhiduan Chen2, and Anming Lu2 1Northwest Plateau Institute of Biology, the Chinese Academy of Sciences, Qinghai 810001, P.R. China 2Laboratory of Systematic and Evolutionary Botany, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, P.R. China (Received December 30, 2000; Accepted November 22, 2001) Abstract. The presumed pair relationships of intercontinental vicariad species in the Podophyllum group (Sinopodophyllum hexandrum vs. Podophyllum pelatum and Diphylleia grayi vs. D. cymosa) were recently consid- ered to be paraphyletic. In the present paper, the trnL-F and ITS gene sequences of the representatives were used to examine the sister relationships of these two vicariad species. A heuristic parsimony analysis based on the trnL- F data identified Diphylleia as the basal clade of the other three genera, but provided poor resolution of their interrelationships. High sequence divergence was found in the ITS data. ITS1 region, more variable but parsimony- uninformative, has no phylogenetic value. Sequence divergence of the ITS2 region provided abundant, phylogeneti- cally informative variable characters. Analysis of ITS2 sequences confirmeda sister relationship between the presumable vicariad species, in spite of a low bootstrap support for Sinopodophyllum hexandrum vs. Podophyllum pelatum. The combined ITS2 and trnL-F data enforced a sister relationship between Sinopodophyllum hexandrum and Podophyl- lum pelatum with an elevated bootstrap support of 100%. Based on molecular phylogeny, the morphological evo- lution of this group was discussed. -
Assembly and Comparative Analysis of Complete Mitochondrial Genome Sequence of an Economic Plant Salix Suchowensis
Assembly and comparative analysis of complete mitochondrial genome sequence of an economic plant Salix suchowensis Ning Ye1, Xuelin Wang1, Juan Li2, Changwei Bi3, Yiqing Xu1, Dongyang Wu4 and Qiaolin Ye1 1 College of Information Science and Technology, Nanjing Forestry University, Nanjing, Jiangsu, China 2 School of Electrical and Automatic Engineering, Nanjing Normal University, Nanjing, Jiangsu, China 3 School of Biological Science and Medical Engineering, Southeast University, Nanjing, Jiangsu, China 4 College of Forest Resources and Environment, Nanjing Forestry University, Nanjing, Jiangsu, China ABSTRACT Willow is a widely used dioecious woody plant of Salicaceae family in China. Due to their high biomass yields, willows are promising sources for bioenergy crops. In this study, we assembled the complete mitochondrial (mt) genome sequence of S. suchowensis with the length of 644,437 bp using Roche-454 GS FLX Titanium sequencing technologies. Base composition of the S. suchowensis mt genome is A (27.43%), T (27.59%), C (22.34%), and G (22.64%), which shows a prevalent GC content with that of other angiosperms. This long circular mt genome encodes 58 unique genes (32 protein-coding genes, 23 tRNA genes and 3 rRNA genes), and 9 of the 32 protein-coding genes contain 17 introns. Through the phylogenetic analysis of 35 species based on 23 protein-coding genes, it is supported that Salix as a sister to Populus. With the detailed phylogenetic information and the identification of phylogenetic position, some ribosomal protein genes and succinate dehydrogenase genes are found usually lost during evolution. As a native shrub willow species, this worthwhile research of S. -
Check List Lists of Species Check List 12(1): 1824, 6 January 2016 Doi: ISSN 1809-127X © 2016 Check List and Authors
12 1 1824 the journal of biodiversity data 6 January 2016 Check List LISTS OF SPECIES Check List 12(1): 1824, 6 January 2016 doi: http://dx.doi.org/10.15560/12.1.1824 ISSN 1809-127X © 2016 Check List and Authors Flora of Niti Valley: a cold arid region of Nanda Devi Biosphere Reserve, Western Himalaya, India Amit Kumar, Monideepa Mitra, Bhupendra S. Adhikari* and Gopal S. Rawat Department of Habitat Ecology, Wildlife Institute of India, Post Box #18, Chandrabani, Dehradun 248001, Uttarakhand, India * Corresponding author. E-mail: [email protected] Abstract: Located in the extended buffer zone of region and characterized by extreme climatic conditions, Nanda Devi Biosphere Reserve in Western Himalaya, such as diurnal fluctuations in temperatures, scanty and Niti valley represents a cold arid region. The reserve has erratic rainfall, heavy winds and snowfall. been extensively surveyed in terms of floral diversity by The Indian Trans-Himalaya (ITH) usually described as various workers, albeit highly confined to the core zones. ‘High Altitude Cold Desert Zone’ (Zone 1) spreads into The current survey recorded 495 species belonging to three biogeographic provinces: 1A, Ladakh mountains: 267 genera and 73 families of vascular plants through Kargil, Nubra and Zanskar in Jammu and Kashmir systematic collection in the years 2011, 2012 and 2014. and Lahul and Spiti in Himachal Pradesh); 1B, Tibetan Of the recorded species, 383 were dicots, 93 monocots, plateau: Changthang region of Ladakh and northern 9 pteridophytes and 10 gymnosperms. Asteraceae was parts of the states of Uttarakhand; and 1C, Sikkim most diverse family (32 genera with 58 species), followed Plateau (Rodgers et al. -
Investigation of the Genomics of Gender Regulation in Populus
INVESTIGATION OF THE GENOMICS OF GENDER REGULATION IN POPULUS TRICHOCARPA by Nyssa A. Temmel B.Sc. (Hons) University of Victoria, 2002 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES (Botany) THE UNIVERSITY OF BRITISH COLUMBIA (Vancouver) December 2011 © Nyssa A. Temmel, 2011 Abstract This thesis reports the findings of four projects conducted to study the genomics of gender regulation in Populus trichocarpa. Sex-linked markers previously discovered in Salix vimilanis were tested to determine if they were also sex-linked in other Salix species and P. trichocarpa. It was found that the DNA sequence of the SCAR 354 marker, and its position at the 5’ end of a gene encoding an Ssu72-like protein, was conserved with some SFP variability in species of Salix and P. trichocarpa. While this marker may be useful for phylogenetic or population studies in Salix, this marker was not sex-linked in the species investigated in this study. An investigation of genes located on the telomeric end of chromosome 19, the putative sex chromosome in P. trichocarpa, was conducted to look for gender-biased SNPs that would indicate recombination suppression in the region on a sex locus. A large variability in the number of SNPs was observed in the gene sequences studied, but no SNPs that segregated with gender were discovered so a genetic marker that could be used to sex P. trichocarpa individuals of unknown gender could not be developed. Using a microarray approach, gender-biased gene-expression was studied in leaf tissue of P. -
Short Botanical List of Non-Bulbous Plant Families and Genera
SHORT BOTANICAL LIST OF NON-BULBOUS PLANT FAMILIES AND GENERA Apiaceae (was Umbelliferae): Aciphylla, Astrantia, Azorella, Bolax, Hacquetia, etc. Asparagaceae: Anthericum, Arthropodium, Disporopsis, Hosta, Maianthemum, Ophiopogon, Polygonatum, Speirantha, etc Berberidaceae: Berberis, Bongardia, Dysosma, Epimedium, Gymnospermium, Jeffersonia, Leontice, Mahonia, Podophyllum, Ranzania, Sinopodophyllum, Vancouveria, etc. Boraginaceae: Alkanna, Anchusa, Eritrichium, Hesperochiron, Lithodora, Mertensia, Moltkia, Myosotis, Omphalodes, Onosma, Phacelia, Pulmonaria, Romanzoffia, etc Brassicaceae: Aethionema, Alyssum, Arabis, Aubrieta, Cardamine, Chorispora, Clausia, Degenia, Draba, Erysimum, Fibigia, Iberis, Matthiola, Morisia, Notothlaspi, Petrocallis, Thlaspi, Xerodraba, etc Cactaceae: Echinocereus, Lobivia, Maihuenia, Mammilaria, Opuntia, Pediocactus, Rebutia, Sclerocactus, etc Calceolariaceae: Calceolaria , Jovellana Campanulaceae: Adenophora, Asyneuma, Campanula ( inc. Diosphaera), Codonopsis, Cyananthus, Edraianthus, Favratia, Isotoma, Lobelia (inc. Hypsella and Pratia), Physoplexis, Phyteuma, Platycodon,Trachelium, Wahlenbergia, etc. Caryophyllaceae: Arenaria, Cerastium, Dianthus, Gypsophila, Lychnis, Minuartia, Petrorhagia (was Tunica), Saponaria, Silene, Vaccaria (was Melandrium) etc. Celastraceae: Euonymus, Parnassia Colchicaceae: Disporum, Uvularia Commelinaceae: Weldenia. Compositae (was Asteraceae): Achillea, Anacyclus, Anaphalis, Antennaria, Anthemis, Artemisia, Aster, Brachyclados, Brachyglottis, Carduncellus, Celmisia, -
Sinopodophyllum (PDF)
Fl. China 19: 783. 2011. 4. SINOPODOPHYLLUM T. S. Ying, Acta Phytotax. Sin. 17(1): 15. 1979. 桃儿七属 tao er qi shu Ying Junsheng (应俊生 Ying Tsun-shen); David E. Boufford, Anthony R. Brach Herbs, perennial. Rhizomes stout, shortly nodose; aerial stems erect, with large brown scales at base. Leaves 2, simple, petio- lulate; base cordate, apex 3–5-dissected, usually to ca. midway or more, sometimes partitions 2- or 3-lobed. Inflorescence terminal. Flowers appearing before leaves, bisexual, solitary, pink, large. Sepals 6, caducous. Petals 6, open. Anthers basifixed, dehiscing longitudinally. Pistils 1; ovary ellipsoid, 1-loculed, with numerous ovules. Fruit a berry. Seeds numerous, without fleshy arils. Pollen grains in tetrads. 2n = 12*, 14*. One species: E Afghanistan, Bhutan, China, N India, Kashmir, Nepal, and Pakistan. Sinopodophyllum was included within Podophyllum by Shaw (in Stearn, Gen. Epimedium, 258. 2002). 1. Sinopodophyllum hexandrum (Royle) T. S. Ying in C. Y. Wu, Fl. Xizang. 2: 119. 1985. 桃儿七 tao er qi Podophyllum hexandrum Royle, Ill. Bot. Himal. Mts. 1: 64. 1834; P. emodi Falconer ex Royle; P. emodi var. chinense Sprague; Sinopodophyllum emodi (Falconer ex Royle) T. S. Ying. Plants 20–50 cm tall. Stems solitary, angulate, glabrous. Leaf petiole 10–25 cm; leaf blade orbicular, not peltate, 11–20 × 18–30 cm, thinly papery, abaxially pubescent, adaxially gla- brous, base cordate, 3–5-dissected to ca. midway or more, often partitions 2- or 3-lobed, apex of lobes acute or acuminate, mar- gin entire or coarsely dentate, teeth apiculate. Petals obovate or obovate-oblong, 2.5–3.5 × 1.5–1.8 cm, apex slightly sinuolate. -
Analyzing and Characterizing the Chloroplast Genome of Salix Wilsonii
Hindawi BioMed Research International Volume 2019, Article ID 5190425, 14 pages https://doi.org/10.1155/2019/5190425 Research Article Analyzing and Characterizing the Chloroplast Genome of Salix wilsonii Yingnan Chen ,NanHu , and Huaitong Wu Key Laboratory of Forest Genetics & Biotechnology of Educational Department of China and of Jiangsu Province, College of Forestry, Nanjing Forestry University, Nanjing 210037, China Correspondence should be addressed to Yingnan Chen; [email protected] Received 2 April 2019; Accepted 13 June 2019; Published 15 July 2019 Academic Editor: Yu-Chang Tyan Copyright © 2019 Yingnan Chen et al. Tis is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Salix wilsonii is an important ornamental willow tree widely distributed in China. In this study, an integrated circular chloroplast genome was reconstructed for S. wilsonii based on the chloroplast reads screened from the whole-genome sequencing data generated with the PacBio RSII platform. Te obtained pseudomolecule was 155,750 bp long and had a typical quadripartite structure, comprising a large single copy region (LSC, 84,638 bp) and a small single copy region (SSC, 16,282 bp) separated by two inverted repeat regions (IR, 27,415 bp). Te S. wilsonii chloroplast genome encoded 115 unique genes, including four rRNA genes, 30 tRNA genes, 78 protein-coding genes, and three pseudogenes. Repetitive sequence analysis identifed 32 tandem repeats, 22 forward repeats, two reverse repeats, and fve palindromic repeats. Additionally, a total of 118 perfect microsatellites were detected, with mononucleotide repeats being the most common (89.83%). -
Genetic Diversity and Structure of Sinopodophyllum Hexandrum (Royle) Ying in the Qinling Mountains, China
Genetic Diversity and Structure of Sinopodophyllum hexandrum (Royle) Ying in the Qinling Mountains, China Wei Liu, Dongxue Yin, Jianjun Liu*,NaLi College of Forestry, Northwest A & F University, Yangling, China Abstract Sinopodophyllum hexandrum is an important medicinal plant whose genetic diversity must be conserved because it is endangered. The Qinling Mts. are a S. hexandrum distribution area that has unique environmental features that highly affect the evolution of the species. To provide the reference data for evolutionary and conservation studies, the genetic diversity and population structure of S. hexandrum in its overall natural distribution areas in the Qinling Mts. were investigated through inter-simple sequence repeats analysis of 32 natural populations. The 11 selected primers generated a total of 135 polymorphic bands. S. hexandrum genetic diversity was low within populations (average He = 0.0621), but higher at the species level (He = 0.1434). Clear structure and high genetic differentiation among populations were detected by using the unweighted pair group method for arithmetic averages, principle coordinate analysis and Bayesian clustering. The clustering approaches supported a division of the 32 populations into three major groups, for which analysis of molecular variance confirmed significant variation (63.27%) among populations. The genetic differentiation may have been attributed to the limited gene flow (Nm = 0.3587) in the species. Isolation by distance among populations was determined by comparing genetic distance versus geographic distance by using the Mantel test. Result was insignificant (r = 0.212, P = 0.287) at 0.05, showing that their spatial pattern and geographic locations are not correlated. Given the low within- population genetic diversity, high differentiation among populations and the increasing anthropogenic pressure on the species, in situ conservation measures were recommended to preserve S.