Of the Same Glycine Residue by Arginine and Glutamic Acid Residues
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VOL. 48, 1962 GENETICS: HENNING AND YANOFSKY 1497 of their data with ours indicates that the phenomenon described herein is most likely due to the combination of ma-i + and ry+ subunits. We have also observed reactivation of "inactive" xanthine dehydrogenase of wild-type Drosophila. II Forrest, H. S., E. W. Hanly, and J. M. Lagowski, Genetics, 56, 1455 (1961). 12Horowitz, N., personal communication. 13 Hadorn, E., and I. Schwink, Nature, 177, 940 (1956); Glassman, E., Dros. Inform. Service, 31, 121 (1957). '4Glassman, E., and W. Pinkerton, Science, 131, 1810 (1960). AMINO ACID REPLACEMENTS ASSOCIATED WITH REVERSION AND RECOMBINA TION WITHIN THE A GENE* BY ULF HENNINGt AND CHARLES YANOFSKY DEPARTMENT OF BIOLOGICAL SCIENCES, STANFORD UNIVERSITY, STANFORD, CALIFORNIA Communicated by V. C. Twitty, July 26, 1962 Studies with the A protein of the tryptophan synthetase of Escherichia coli have established that mutationally altered sites that are located at or near the same position in the A gene lead to amino acid substitutions in the same tryptic peptide of the A protein." 2 It has also been shown that two mutants, strains A23 and A46, with alterations extremely close to one another on the genetic map, form A proteins that are distinguishable from the wild-type A protein by the replacement of the same glycine residue by arginine and glutamic acid residues, respectively.1 2 It was concluded from these findings that the mutational alteration characteristic of each of the mutants involved a different nucleotide in the same amino acid coding unit in the A gene. 1 2 Mutants A23 and A46 revert spontaneously to tryptophan independence. Some of the strains obtained, termed full revertants, are phenotypically indistinguishable from the wild type, while others, termed partial revertants, grow slowly without tryptophan supplementation. The mutations resulting in partial reversion may occur at the same site as the original mutation (primary site reversion), or at a second site in the A gene.3' 4 The present report is concerned with a study of a primary site partial revertant and several full revertants of mutant A46, and full revertants derived from two iden- tical mutants, A23 and A28. The results obtained demonstrate that any one of four different amino acids can occupy a certain position in the A protein and the protein will be functional. It is also shown that recombinants obtained from crosses between some of the strains form A proteins with different amino acids at a particular position in the A protein than the amino acids present at the same position in the A proteins of the parental strains. Materials and Methods.-Bacterial strains: Mutants A23, A28, and A46, ob- tained by penicillin selection6 following ultraviolet irradiation of E. coli K-12, have been described in detail elsewhere." 2, 7 The full and partial revertants studied were spontaneous revertants.3, 5 Genetic procedures: The methods employed for the preparation of transducing lysates of phage Plkc and for transduction with this phage have been described Downloaded by guest on September 28, 2021 1498 GENETICS: HENNING AND YANOFSKY PROC. N. A. S. by Lennox.8 In order to virtually exclude the carry-over of transducing phage with the wild-type tryptophan region, all lysates were prepared with phage that was grown on the donor strain. The use of cys- tryp- recipients for recombina- tional analyses has been discussed previously.7 Isolation of peptides and amino acid analyses: The procedures used for the isolation of the A protein,9 as well as the methods used for the digestion of the protein with trypsin and chymotrypsin,1' the isolation of peptides,2"1' and the analysis of peptides have been described previously." 2 Results. Characteristics of strain A46PR9 and the full revertants derived from mu- tants A46, A23, and A28: The characteristics of the revertant strains examined in this study are summarized in Table 1. With the exception of partial revertant A46PR9, the strains are indistinguishable from the wild type. As reported pre- viously,3 the A protein of strain A46PR9 is only about 1/1,000 as active as the wild- type strain in the physiologically important reaction, the conversion of indolegly- cerol phosphate to tryptophan. The A proteins of all the revertants studied TABLE 1 CHARACTERISTICS OF REVERTANTS OF MUTANTS A23 AND A46 Generation Accumulation Specific activity time, of of Strain Colony size* minutes* indoleglycerol A protein: wild type - 70-72 - 2 A46 auxotroph auxotroph +t 31t A46PR9 2/3 of wild type 84 + 91 A46FR1 = wild type 70-72 - 2.2 A46FR2 = wild type 70-72 - 2.1 A23 auxotroph auxotroph + t 23 t A23FR1 = wild type 70 - 2.1 A23FR2 = wild type 70 - 1.9 A28FR1 = wild type 70 - 1.9 * On glucose-minimal medium at 370C. t Grown on limiting amounts of indole (2.5 jig/nml). I In the conversion of indole to tryptophan. have the same electrophoretic mobility as the wild-type protein in polyacrylamide gel"2 at pH 9.5.13 The A46 protein is more negatively charged under the same conditions. This behavior is consistent with the amino acid substitution in this protein, glycine to glutamic acid. The charge of the A23 protein could not be determined in polyacrylamide gel, presumably because of its extreme lability.'3 The A23 protein would be expected to be more positively charged than the wild- type protein. The mobilities of the revertant proteins suggest that in each case a charged amino acid was replaced by an amino acid with a side chain that is not charged at pH 9.5. Examination of the A46PR9, A46FR1, and A4f6FR2 tryptic peptides corresponding to the tryptic peptide altered in mutant A46: Tryptic peptide TP3 was isolated from digests of the A46PR9, A46FR1, and A46FR2 proteins. The amino acid composi- tion of these three peptides is compared with the composition of the corresponding wild-type and A46 peptides in Table 2. The analyses show that one glutamic acid or glutamine residue present in the A46 peptide is replaced by a valine residue in the peptide from A46PR9, by an alanine residue in the peptide from A46FR1, and by a glycine residue in the peptide isolated frcm A46FR2. As described pre- viously,2 chymotryptic hydrolysis of peptide TP3 gives three peptides, designated Downloaded by guest on September 28, 2021 VOL. 48, 1962 GENETICS: HENNING AND YANOFSKY 1499 TP3C1, TP3C2, and TP3C3. These - three peptides were isolated from chy- O . Oj O motryptic digests of TP3 from the par- tial revertant and the two full revertants of A46. The amino acid analyses of these R+g R. peptides (Table 2) showed that in all cases peptide TP3C1 contained the amino - acid substitution. Since both glutamic coRoO° acid and glutamine residues were present ¢a in TP3C1 from the A protein of mutant 0 A46, it was not possible to decide from ¢ the analyses alone whether the glutamic W e A acid residue or the glutamine residue was >- ¢ E replaced in the peptides from the revert- - eq ,^ V_ oooo0 0 C eq ants. It had been deduced" 2 from pre- : ..H - vious experiments that the glycine in g, TP3C1 from the wild-type protein was Z ¢ >, t replaced by arginine in peptide TP3C1 00° --4 °s 4 from strain A23. Since the glycine in the be wild-type peptide is also replaced by glu- tamic acid in peptide TP3C1 from mutant 2 0 A46, it was assumed that glycine, argin- v) ine, and glutamic acid occupy the same w position in these different proteins. Ex- Q a) periments using carboxypeptidase diges- ¢¢d tion of the TP3C1 peptide from the vari- z ous proteins have now verified this as- COO. sumption.15 The same studies have Eq , shown that the valine, alanine, and gly- a cine residues of the A46PR9, A46FR1, v Q"coE, 0-4co- o0o co aco 0 3 and A46FR2 peptides occupy the same * position, in each case replacing the glu- ° tamic acid residue of the A46 peptide evN _ q (Fig. 1). Examination of the A23FR1, A23FR2, oa)O and A28FR1 chymotryptic peptides cor- E ID s, W.0 0 responding to the chymotryptic peptide ct "am*0 altered in mutant A23: Peptide TP3C1 S.0 is present in chymotryptic digests of the -- Cq-q -4 - a) A protein and thus can be isolated with- 0Eq Go<- out prior digestion of the protein with CD trypsin. This peptide was isolated from B C Cq-4 M -- - chymotryptic digests of the A proteins of '50 0 3 the three full revertants derived from 0 °,t. strains A23 and A28. The results of the 0 *~~0a)~~~ 0 'v-C)~ a) amino acid analyses of the three peptides E Q08° C0)~ .0 Z- a are given in Table 2. In the A protein of W >b* F. Downloaded by guest on September 28, 2021 1500 GENETICS: HENNING AND YANOFSKY PROC. N. A. S. C TP3Cl C 11 2-5 6 7 8 9 -TyrjAsp-(Pro2, Ala2)-Leu-G1uNH2-Gly-Phe Gly- UGG 4 (wild type) UAG UGC -Glu- -Arg- (A46) (A23, A28) I X/IX UUG UCG UGG UGG UUC UGG -Val- -Ala- -Gly- -Gly- -Ser- -Gly- (A46PR9) (A46FR1) (A46FR2) (A23FR1) (A23FR2) (A28FR1) FIG. 1.-The amino acid substitutions at position 8 in peptide TP3Cl and the corresponding RNA coding triplets.". 20 C indicates bonds attacked by chymotrypsin. The nucleotide sequence for glutamic acid has been assigned arbitrarily. The other sequences are based on the assumption that each mutational change involves a single nucleotide substitution. Partial amino acid se- quence data is based on unpublished studies of Carlton and Yanofsky. strains A23FR1 and A28FR1 the arginine residue characteristic of the A23 or A28 peptides is replaced by a glycine residue, while the arginine is replaced by serine in the peptide obtained from the protein of A23FR2.