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Taxonomy and Diversity of the Sponge Fauna from Walters Shoal, a Shallow Seamount in the Western Indian Ocean Region
Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region By Robyn Pauline Payne A thesis submitted in partial fulfilment of the requirements for the degree of Magister Scientiae in the Department of Biodiversity and Conservation Biology, University of the Western Cape. Supervisors: Dr Toufiek Samaai Prof. Mark J. Gibbons Dr Wayne K. Florence The financial assistance of the National Research Foundation (NRF) towards this research is hereby acknowledged. Opinions expressed and conclusions arrived at, are those of the author and are not necessarily to be attributed to the NRF. December 2015 Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region Robyn Pauline Payne Keywords Indian Ocean Seamount Walters Shoal Sponges Taxonomy Systematics Diversity Biogeography ii Abstract Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region R. P. Payne MSc Thesis, Department of Biodiversity and Conservation Biology, University of the Western Cape. Seamounts are poorly understood ubiquitous undersea features, with less than 4% sampled for scientific purposes globally. Consequently, the fauna associated with seamounts in the Indian Ocean remains largely unknown, with less than 300 species recorded. One such feature within this region is Walters Shoal, a shallow seamount located on the South Madagascar Ridge, which is situated approximately 400 nautical miles south of Madagascar and 600 nautical miles east of South Africa. Even though it penetrates the euphotic zone (summit is 15 m below the sea surface) and is protected by the Southern Indian Ocean Deep- Sea Fishers Association, there is a paucity of biodiversity and oceanographic data. -
Appendix: Some Important Early Collections of West Indian Type Specimens, with Historical Notes
Appendix: Some important early collections of West Indian type specimens, with historical notes Duchassaing & Michelotti, 1864 between 1841 and 1864, we gain additional information concerning the sponge memoir, starting with the letter dated 8 May 1855. Jacob Gysbert Samuel van Breda A biography of Placide Duchassaing de Fonbressin was (1788-1867) was professor of botany in Franeker (Hol published by his friend Sagot (1873). Although an aristo land), of botany and zoology in Gent (Belgium), and crat by birth, as we learn from Michelotti's last extant then of zoology and geology in Leyden. Later he went to letter to van Breda, Duchassaing did not add de Fon Haarlem, where he was secretary of the Hollandsche bressin to his name until 1864. Duchassaing was born Maatschappij der Wetenschappen, curator of its cabinet around 1819 on Guadeloupe, in a French-Creole family of natural history, and director of Teyler's Museum of of planters. He was sent to school in Paris, first to the minerals, fossils and physical instruments. Van Breda Lycee Louis-le-Grand, then to University. He finished traveled extensively in Europe collecting fossils, especial his studies in 1844 with a doctorate in medicine and two ly in Italy. Michelotti exchanged collections of fossils additional theses in geology and zoology. He then settled with him over a long period of time, and was received as on Guadeloupe as physician. Because of social unrest foreign member of the Hollandsche Maatschappij der after the freeing of native labor, he left Guadeloupe W etenschappen in 1842. The two chief papers of Miche around 1848, and visited several islands of the Antilles lotti on fossils were published by the Hollandsche Maat (notably Nevis, Sint Eustatius, St. -
An Analysis of Complete Mitochondrial Genome and Received: 17 March 2015 Accepted: 12 June 2015 Ribosomal Data of Ramisyllis Published: 17 July 2015 Multicaudata
www.nature.com/scientificreports OPEN The making of a branching annelid: an analysis of complete mitochondrial genome and Received: 17 March 2015 Accepted: 12 June 2015 ribosomal data of Ramisyllis Published: 17 July 2015 multicaudata M. Teresa Aguado1, Christopher J. Glasby2, Paul C. Schroeder3, Anne Weigert4,5 & Christoph Bleidorn4 Ramisyllis multicaudata is a member of Syllidae (Annelida, Errantia, Phyllodocida) with a remarkable branching body plan. Using a next-generation sequencing approach, the complete mitochondrial genomes of R. multicaudata and Trypanobia sp. are sequenced and analysed, representing the first ones from Syllidae. The gene order in these two syllids does not follow the order proposed as the putative ground pattern in Errantia. The phylogenetic relationships of R. multicaudata are discerned using a phylogenetic approach with the nuclear 18S and the mitochondrial 16S and cox1 genes. Ramisyllis multicaudata is the sister group of a clade containing Trypanobia species. Both genera, Ramisyllis and Trypanobia, together with Parahaplosyllis, Trypanosyllis, Eurysyllis, and Xenosyllis are located in a long branched clade. The long branches are explained by an accelerated mutational rate in the 18S rRNA gene. Using a phylogenetic backbone, we propose a scenario in which the postembryonic addition of segments that occurs in most syllids, their huge diversity of reproductive modes, and their ability to regenerate lost parts, in combination, have provided an evolutionary basis to develop a new branching body pattern as realised in Ramisyllis. Annelids are a taxon of marine lophotrochozoans with mainly segmented members showing a huge diversity of body plans1. One of the most speciose taxa is the Syllidae, which are further well-known for their diverse reproductive modes. -
Effects of Agelas Oroides and Petrosia Ficiformis Crude Extracts on Human Neuroblastoma Cell Survival
161-169 6/12/06 19:46 Page 161 INTERNATIONAL JOURNAL OF ONCOLOGY 30: 161-169, 2007 161 Effects of Agelas oroides and Petrosia ficiformis crude extracts on human neuroblastoma cell survival CRISTINA FERRETTI1*, BARBARA MARENGO2*, CHIARA DE CIUCIS3, MARIAPAOLA NITTI3, MARIA ADELAIDE PRONZATO3, UMBERTO MARIA MARINARI3, ROBERTO PRONZATO1, RENATA MANCONI4 and CINZIA DOMENICOTTI3 1Department for the Study of Territory and its Resources, University of Genoa, Corso Europa 26, I-16132 Genoa; 2G. Gaslini Institute, Gaslini Hospital, Largo G. Gaslini 5, I-16148 Genoa; 3Department of Experimental Medicine, University of Genoa, Via Leon Battista Alberti 2, I-16132 Genoa; 4Department of Zoology and Evolutionistic Genetics, University of Sassari, Via Muroni 25, I-07100 Sassari, Italy Received July 28, 2006; Accepted September 20, 2006 Abstract. Among marine sessile organisms, sponges (Porifera) Introduction are the major producers of bioactive secondary metabolites that defend them against predators and competitors and are used to Sponges (Porifera) are a type of marine fauna that produce interfere with the pathogenesis of many human diseases. Some bioactive molecules to defend themselves from predators or of these biological active metabolites are able to influence cell spatial competitors (1,2). It has been demonstrated that some survival and death, modifying the activity of several enzymes of these metabolites have a biomedical potential (3) and in involved in these cellular processes. These natural compounds particular, Ara-A and Ara-C are clinically used as antineoplastic show a potential anticancer activity but the mechanism of drugs (4,5) in the routine treatment of patients with leukaemia this action is largely unknown. -
Proposal for a Revised Classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3*
Morrow and Cárdenas Frontiers in Zoology (2015) 12:7 DOI 10.1186/s12983-015-0099-8 DEBATE Open Access Proposal for a revised classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3* Abstract Background: Demospongiae is the largest sponge class including 81% of all living sponges with nearly 7,000 species worldwide. Systema Porifera (2002) was the result of a large international collaboration to update the Demospongiae higher taxa classification, essentially based on morphological data. Since then, an increasing number of molecular phylogenetic studies have considerably shaken this taxonomic framework, with numerous polyphyletic groups revealed or confirmed and new clades discovered. And yet, despite a few taxonomical changes, the overall framework of the Systema Porifera classification still stands and is used as it is by the scientific community. This has led to a widening phylogeny/classification gap which creates biases and inconsistencies for the many end-users of this classification and ultimately impedes our understanding of today’s marine ecosystems and evolutionary processes. In an attempt to bridge this phylogeny/classification gap, we propose to officially revise the higher taxa Demospongiae classification. Discussion: We propose a revision of the Demospongiae higher taxa classification, essentially based on molecular data of the last ten years. We recommend the use of three subclasses: Verongimorpha, Keratosa and Heteroscleromorpha. We retain seven (Agelasida, Chondrosiida, Dendroceratida, Dictyoceratida, Haplosclerida, Poecilosclerida, Verongiida) of the 13 orders from Systema Porifera. We recommend the abandonment of five order names (Hadromerida, Halichondrida, Halisarcida, lithistids, Verticillitida) and resurrect or upgrade six order names (Axinellida, Merliida, Spongillida, Sphaerocladina, Suberitida, Tetractinellida). Finally, we create seven new orders (Bubarida, Desmacellida, Polymastiida, Scopalinida, Clionaida, Tethyida, Trachycladida). -
Supplementary Materials: Patterns of Sponge Biodiversity in the Pilbara, Northwestern Australia
Diversity 2016, 8, 21; doi:10.3390/d8040021 S1 of S3 9 Supplementary Materials: Patterns of Sponge Biodiversity in the Pilbara, Northwestern Australia Jane Fromont, Muhammad Azmi Abdul Wahab, Oliver Gomez, Merrick Ekins, Monique Grol and John Norman Ashby Hooper 1. Materials and Methods 1.1. Collation of Sponge Occurrence Data Data of sponge occurrences were collated from databases of the Western Australian Museum (WAM) and Atlas of Living Australia (ALA) [1]. Pilbara sponge data on ALA had been captured in a northern Australian sponge report [2], but with the WAM data, provides a far more comprehensive dataset, in both geographic and taxonomic composition of sponges. Quality control procedures were undertaken to remove obvious duplicate records and those with insufficient or ambiguous species data. Due to differing naming conventions of OTUs by institutions contributing to the two databases and the lack of resources for physical comparison of all OTU specimens, a maximum error of ± 13.5% total species counts was determined for the dataset, to account for potentially unique (differently named OTUs are unique) or overlapping OTUs (differently named OTUs are the same) (157 potential instances identified out of 1164 total OTUs). The amalgamation of these two databases produced a complete occurrence dataset (presence/absence) of all currently described sponge species and OTUs from the region (see Table S1). The dataset follows the new taxonomic classification proposed by [3] and implemented by [4]. The latter source was used to confirm present validities and taxon authorities for known species names. The dataset consists of records identified as (1) described (Linnean) species, (2) records with “cf.” in front of species names which indicates the specimens have some characters of a described species but also differences, which require comparisons with type material, and (3) records as “operational taxonomy units” (OTUs) which are considered to be unique species although further assessments are required to establish their taxonomic status. -
Kinomes of Selected Parasitic Helminths - Fundamental and Applied Implications
KINOMES OF SELECTED PARASITIC HELMINTHS - FUNDAMENTAL AND APPLIED IMPLICATIONS Andreas Julius Stroehlein BSc (Bingen am Rhein, Germany) MSc (Berlin, Germany) ORCID ID 0000-0001-9432-9816 Submitted in fulfilment of the requirements of the degree of Doctor of Philosophy July 2017 Melbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne Produced on archival quality paper ii SUMMARY ________________________________________________________________ Worms (helminths) are a large, paraphyletic group of organisms including free-living and parasitic representatives. Among the latter, many species of roundworms (phylum Nematoda) and flatworms (phylum Platyhelminthes) are of major socioeconomic importance worldwide, causing debilitating diseases in humans and livestock. Recent advances in molecular technologies have allowed for the analysis of genomic and transcriptomic data for a range of helminth species. In this context, studying molecular signalling pathways in these species is of particular interest and should help to gain a deeper understanding of the evolution and fundamental biology of parasitism among these species. To this end, the objective of the present thesis was to characterise and curate the protein kinase complements (kinomes) of parasitic worms based on available transcriptomic data and draft genome sequences using a bioinformatic workflow in order to increase our understanding of how kinase signalling regulates fundamental biology and also to gain new insights into the evolution of protein kinases in parasitic worms. In addition, this work also aimed to investigate protein kinases with regard to their potential as useful targets for the development of novel anthelmintic small-molecule agents. This thesis consists of a literature review, four chapters describing original research findings and a general discussion. -
Porifera) in Singapore and Description of a New Species of Forcepia (Poecilosclerida: Coelosphaeridae)
Contributions to Zoology, 81 (1) 55-71 (2012) Biodiversity of shallow-water sponges (Porifera) in Singapore and description of a new species of Forcepia (Poecilosclerida: Coelosphaeridae) Swee-Cheng Lim1, 3, Nicole J. de Voogd2, Koh-Siang Tan1 1 Tropical Marine Science Institute, National University of Singapore, 18 Kent Ridge Road, Singapore 119227, Singapore 2 Netherlands Centre for Biodiversity, Naturalis, PO Box 9517, 2300 RA Leiden, The Netherlands 3 E-mail: [email protected] Key words: intertidal, Southeast Asia, sponge assemblage, subtidal, tropical Abstract gia) patera (Hardwicke, 1822) was the first sponge de- scribed from Singapore in the 19th century. This was A surprisingly high number of shallow water sponge species followed by Leucosolenia flexilis (Haeckel, 1872), (197) were recorded from extensive sampling of natural inter- Coelocarteria singaporensis (Carter, 1883) (as Phloeo tidal and subtidal habitats in Singapore (Southeast Asia) from May 2003 to June 2010. This is in spite of a highly modified dictyon), and Callyspongia (Cladochalina) diffusa coastline that encompasses one of the world’s largest container Ridley (1884). Subsequently, Dragnewitsch (1906) re- ports as well as extensive oil refining and bunkering industries. corded 24 sponge species from Tanjong Pagar and Pu- A total of 99 intertidal species was recorded in this study. Of lau Brani in the Singapore Strait. A further six species these, 53 species were recorded exclusively from the intertidal of sponge were reported from Singapore in the 1900s, zone and only 45 species were found on both intertidal and subtidal habitats, suggesting that tropical intertidal and subtidal although two species, namely Cinachyrella globulosa sponge assemblages are different and distinct. -
Two New Species of the Genus Callyspongia (Haplosclerida:Callyspongiidae) from Korea
Journal of Asia-Pacific Biodiversity xxx (2017) 1e5 Contents lists available at ScienceDirect Journal of Asia-Pacific Biodiversity journal homepage: http://www.elsevier.com/locate/japb Original Article Two new species of the genus Callyspongia (Haplosclerida:Callyspongiidae) from Korea Kim Hyung June, Kang Dong Won* National Marine Biodiversity Institute of Korea, Seocheon 33662, South Korea article info abstract Article history: In this study, two new species of the genus Callyspongia Duchassaing & Michelotti, 1864: Callyspognia Received 11 July 2017 pyeongdaensis sp. nov. and Callyspongia maraensis sp. nov. from Korea are described as new to science. All Received in revised form of the available information is presented in this study including the localities from which the species 5 September 2017 were collected and illustrations of spicule and skeleton. Accepted 22 September 2017 Ó 2017 National Science Museum of Korea (NSMK) and Korea National Arboretum (KNA), Publishing Available online xxx Services by Elsevier. This is an open access article under the CC BY-NC-ND license (http:// creativecommons.org/licenses/by-nc-nd/4.0/). Keywords: Callyspongiidae Callyspongia Korea New species Sponge Introduction surveyed Jeju Island, South Korea, where marine life has not been studied and is affected by Kuroshio Current. As a result, here, we The family Callyspongiidae was found in 1936 by de Laubenfels describe one new species of Callyspongia. This new species was and consists of haplosclerid sponges which have a two- compared with the Korea and Japan Callyspongia species with a dimensional ectosomal skeleton of primary, secondary, and some- similar morphology. times tertiary fibers (De Voogd 2004; Desqueyroux-Faundeze and Valentine 2002). -
Sponges of the Caribbean: Linking Sponge Morphology and Associated Bacterial Communities Ericka Ann Poppell
University of Richmond UR Scholarship Repository Master's Theses Student Research 5-2011 Sponges of the Caribbean: linking sponge morphology and associated bacterial communities Ericka Ann Poppell Follow this and additional works at: http://scholarship.richmond.edu/masters-theses Part of the Biology Commons Recommended Citation Poppell, Ericka Ann, "Sponges of the Caribbean: linking sponge morphology and associated bacterial communities" (2011). Master's Theses. Paper 847. This Thesis is brought to you for free and open access by the Student Research at UR Scholarship Repository. It has been accepted for inclusion in Master's Theses by an authorized administrator of UR Scholarship Repository. For more information, please contact [email protected]. ABSTRACT SPONGES OF THE CARIBBEAN: LINKING SPONGE MORPHOLOGY AND ASSOCIATED BACTERIAL COMMUNITIES By: Ericka Ann Poppell, B.S. A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science at the University of Richmond University of Richmond, May 2011 Thesis Director: Malcolm S. Hill, Ph.D., Professor, Department of Biology The ecological and evolutionary relationship between sponges and their symbiotic microflora remains poorly understood, which limits our ability to understand broad scale patterns in benthic-pelagic coupling on coral reefs. Previous research classified sponges into two different categories of sponge-microbial associations: High Microbial Abundance (HMA) and Low Microbial Abundance (LMA) sponges. Choanocyte chamber morphology and density was characterized in representatives of HMA and LMA sponges using scanning electron I)licroscopy from freeze-fractured tissue. Denaturing Gradient Gel Electrophoresis was used to examine taxonomic differences among the bacterial communities present in a variety of tropical sponges. -
Ctz 74-00 Pinheiro.Indd
Contributions to Zoology, 74 (3/4) 271-278 (2005) Shallow-water Niphatidae (Haplosclerina, Haplosclerida, Demospongiae) from the São Sebastião Channel and its environs (tropical southwestern At- lantic), with the description of a new species U. S. Pinheiro1, 2, *, R.G.S. Berlinck 3, **, E. Hajdu 2, *** 1Departamento de Ciências Biológicas, Universidade Estadual do Sudoeste da Bahia, Rua José Moreira So- brinho, s/n, 45200-000, Jequiezinho, Jequié, BA, Brazil; 2Departamento de Invertebrados, Museu Nacional, Universidade do Brasil, Quinta da Boa Vista, s/n, 20940-040, Rio de Janeiro, RJ, Brazil; 3Instituto de Química de São Carlos, Universidade de São Paulo, São Carlos, SP, Brazil; *FAPERJ fellow, e-mail: upinheiro@gmail. com; **CNPq fellow, e-mail: [email protected]; ***CNPq fellow, e-mail: [email protected] Key words: Porifera, Demospongiae, Haplosclerina, Niphatidae, tropical southwestern Atlantic, taxonomy, new species Abstract Comparison of the niphatids collected in the São Sebastião Channel area and its environs with data Two niphatids are described here: Amphimedon viridis and compiled from the literature lead us to identify Am- Pachychalina alcaloidifera sp. nov. Amphimedon viridis is a common and conspicuous species in most of the tropical western phimedon viridis and a new species, Pachychalina Atlantic. Pachychalina alcaloidifera sp. nov. has this far been alcaloidifera sp. nov., to be described below. found only in the coasts of Rio de Janeiro and São Paulo states. Both species are described on the basis of series of specimens observed alive. Material and methods Specimens were collected during a faunistic survey Contents conducted in the area of the São Sebastião Channel and its environs, in the municipalities of São Sebas- Introduction ................................................................................... -
The Marine Fauna of New Zealand: Porifera, Demospongiae, Part 3 (Haplosclerida and Nepheliospongida)
ISSN 0083-7903, 87 (Print) ISSN 2538-1016; 87 (Online) The Marine Fauna of New Zealand: Porifera, Demospongiae, Part 3 (Haplosclerida and Nepheliospongida) by P. R. BERGQUIST and K. P. WARNE . �· New Zealand Oceanographic Institute Memoir 87 1980 NEW ZEALAND DEPARTMENT OF SCIENTIFIC AND INDUSTRIAL RESEARCH The Marine Fauna of New Zealand: Porifera, I;)emospongiae, Part 3 (Haplosclerida and Nepheliospongida) by P. R. BERGQUIST and K. P. WARNE Department of Zoology, University of Auckland, Private Bag, Auckland, New Zealand New Zealand Oceanographic Institute Memoir 87 1980 This workSig is licensed 1 under the Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/ ISSN 0083-7903 Received for publication: May 1979 © Crown Copyright I 980 This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/ CONTENTS Page LIST OF FIGURES 4 LIST OF TABLES 4 ABSTRACT 5 INTRODUCTION 5 Acknowledgments 8 COLLECTIONS EXAMINED 8 LIST OF SPECIES DESCRIBED 11 SYSTEMATICS ... 12 Order Haplosclerida Topsent 12 Family Haliclonidae de Laubenfels 12 Haliclona Grant, 1835 12 Family Adociidae de Laubenfels 19 Adocia Gray, 1867 20 Orina Gray, 1867 21 Sigmadocia de Laubenfels, 1936 22 Toxadocia de Laubenfels, 1936 ... 24 Family Callyspongiidae de Laubenfels 24 Callyspongia Duchassaing & Michelotti, 1864 ... 24 Chalinopsil/a Lendenfeld, 1888 ... 33 Dactylia Carter, 1885 34 Order Nepheliospongida Bergquist 34 Family Nepheliospongiidae Clark ... 35 Petrosia Vosmaer, 1887 ... 35 Xestospongia de Laubenfels, 1932 36 Family Oceanapiidae Van Soest 37 Oceanapia Norman, 1869 37 Vagocia de Laubenfels, 1936 38 REFERENCES 39 INDEX 41 PLATES ..