Annelida, and Articulata Are Not Monophyletic: Articulating the Metameria (Metazoa, Coelomata)
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New Zealand's Genetic Diversity
1.13 NEW ZEALAND’S GENETIC DIVERSITY NEW ZEALAND’S GENETIC DIVERSITY Dennis P. Gordon National Institute of Water and Atmospheric Research, Private Bag 14901, Kilbirnie, Wellington 6022, New Zealand ABSTRACT: The known genetic diversity represented by the New Zealand biota is reviewed and summarised, largely based on a recently published New Zealand inventory of biodiversity. All kingdoms and eukaryote phyla are covered, updated to refl ect the latest phylogenetic view of Eukaryota. The total known biota comprises a nominal 57 406 species (c. 48 640 described). Subtraction of the 4889 naturalised-alien species gives a biota of 52 517 native species. A minimum (the status of a number of the unnamed species is uncertain) of 27 380 (52%) of these species are endemic (cf. 26% for Fungi, 38% for all marine species, 46% for marine Animalia, 68% for all Animalia, 78% for vascular plants and 91% for terrestrial Animalia). In passing, examples are given both of the roles of the major taxa in providing ecosystem services and of the use of genetic resources in the New Zealand economy. Key words: Animalia, Chromista, freshwater, Fungi, genetic diversity, marine, New Zealand, Prokaryota, Protozoa, terrestrial. INTRODUCTION Article 10b of the CBD calls for signatories to ‘Adopt The original brief for this chapter was to review New Zealand’s measures relating to the use of biological resources [i.e. genetic genetic resources. The OECD defi nition of genetic resources resources] to avoid or minimize adverse impacts on biological is ‘genetic material of plants, animals or micro-organisms of diversity [e.g. genetic diversity]’ (my parentheses). -
Annelida: Dinophilidae) and a Molecularphylogeny Title of the Genus
Trilobodrilus itoi sp nov., with a Re-Description of T. nipponicus (Annelida: Dinophilidae) and a MolecularPhylogeny Title of the Genus Author(s) Kajihara, Hiroshi; Ikoma, Maho; Yamasaki, Hiroshi; Hiruta, Shimpei F. Zoological science, 32(4), 405-417 Citation https://doi.org/10.2108/zs140251 Issue Date 2015-08 Doc URL http://hdl.handle.net/2115/62716 Type article File Information zs_32_p405-.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP ZOOLOGICAL SCIENCE 32: 405–417 (2015) © 2015 Zoological Society of Japan Trilobodrilus itoi sp. nov., with a Re-Description of T. nipponicus (Annelida: Dinophilidae) and a Molecular Phylogeny of the Genus Hiroshi Kajihara1*, Maho Ikoma1, Hiroshi Yamasaki2, and Shimpei F. Hiruta1 1Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan 2Faculty of Science, University of the Ryukyus, Senbaru 1, Nishihara, Nakagami, Okinawa 903-0213, Japan The marine interstitial annelid Trilobodrilus itoi sp. nov., the sixth member of the genus, is described on the basis of specimens collected intertidally at Ishikari Beach, Hokkaido, Japan; this is the sec- ond species in the genus described from the Pacific Rim. In addition, T. nipponicus Uchida and Okuda, 1943 is re-described based on fresh topotypic material from Akkeshi, Hokkaido, Japan. From both species, we determined sequences of the nuclear 18S and 28S rRNA genes, and the mitochondrial cytochrome c oxidase subunit I (COI) gene. Molecular phylogenetic trees based on concatenated sequences of the three genes showed that T. i toi and T. nipponicus form a clade, which was the sister group to a clade containing the two European congeners T. -
Tropical Marine Invertebrates CAS BI 569 Phylum Echinodermata by J
Tropical Marine Invertebrates CAS BI 569 Phylum Echinodermata by J. R. Finnerty Porifera Ctenophora Cnidaria Deuterostomia Ecdysozoa Lophotrochozoa Chordata Arthropoda Annelida Hemichordata Onychophora Mollusca Echinodermata *Nematoda *Platyhelminthes Acoelomorpha Calcispongia Silicispongiae PROTOSTOMIA Phylum Phylum Phylum CHORDATA ECHINODERMATA HEMICHORDATA Blastopore -> anus Radial / equal cleavage Coelom forms by enterocoely ! Protostome = blastopore contributes to the mouth blastopore mouth anus ! Deuterostome = blastopore becomes anus blastopore anus mouth Halocynthia, a tunicate (Urochordata) Coelom Formation Protostomes: Schizocoely Deuterostomes: Enterocoely Enterocoely in a sea star Axocoel (protocoel) Gives rise to small portion of water vascular system. Hydrocoel (mesocoel) Gives rise to water vascular system. Somatocoel (metacoel) Gives rise to lining of adult body cavity. Echinoderm Metamorphosis ECHINODERM FEATURES Water vascular system and tube feet Pentaradial symmetry Coelom formation by enterocoely Water Vascular System Tube Foot Tube Foot Locomotion ECHINODERM DIVERSITY Crinoidea Asteroidea Ophiuroidea Holothuroidea Echinoidea “sea lilies” “sea stars” “brittle stars” “sea cucumbers” “urchins, sand dollars” Group Form & Habit Habitat Ossicles Feeding Special Characteristics Crinoids 5-200 arms, stalked epifaunal Internal skeleton suspension mouth upward; mucous & Of each arm feeders secreting glands on sessile podia Ophiuroids usually 5 thin arms, epifaunal ossicles in arms deposit feeders act and appear like vertebrae -
Tropical Marine Invertebrates CAS BI 569 Major Animal Characters Part 2 — Adult Bodyplan Features by J
Tropical Marine Invertebrates CAS BI 569 Major Animal Characters Part 2 — Adult Bodyplan Features by J. R. Finnerty Metazoan Characters Part II. Adult Body Plan Features CHARACTER states EPITHELIUM: present; absent; BODY LAYERS: diploblastic; triploblastic BODY CAVITIES: precoelomate; acoelomate; pseudocoelomate; eucoelomate; GUT: absent; blind sac; through-gut; SYMMETRY: asymmetrical; radial; bi-radial; bilateral; pentaradial SKELETON: “spicules;” “bones;” hydrostat; exoskeleton EPITHELIUM Sheet of cells that lines body cavities or covers outer body surfaces. E.g., skin, gut lining Creates extracellular compartments four key characteristics: 1.continuous — uninterrupted layer 2. intercellular junctions cell 3. polarity (apical vs. basal) 4. basal lamina (extracellular matrix on which basal cell surface rests; collagen secreted by cells) Ruppert et al., Figure 6.1 3 Body Layers (Germ Layers) Germ layers form during gastrulation ectoderm blastocoel blastocoel endoderm gut blastoderm BLASTULA blastopore 4 Diploblastic Condition Two germ layers, endoderm & ectoderm blastocoel blastocoel endoderm gut gut ectoderm ectoderm 5 Triploblastic Condition Three germ layers, endoderm, ectoderm, & mesoderm. blastocoel gut ectoderm Body Cavities I. Blastocoel the central cavity in the hollow blastula the 1st body cavity II. Archenteron “primitive gut” opens to the outside via the blastopore lined by endoderm III. Coelom cavity entirely lined by mesoderm A pseudocoelom is only partially lined by mesoderm. It may represent a persistent blastocoel. Character -
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Memoirs of Museum Victoria 71: 217–236 (2014) Published December 2014 ISSN 1447-2546 (Print) 1447-2554 (On-line) http://museumvictoria.com.au/about/books-and-journals/journals/memoirs-of-museum-victoria/ Original specimens and type localities of early described polychaete species (Annelida) from Norway, with particular attention to species described by O.F. Müller and M. Sars EIVIND OUG1,* (http://zoobank.org/urn:lsid:zoobank.org:author:EF42540F-7A9E-486F-96B7-FCE9F94DC54A), TORKILD BAKKEN2 (http://zoobank.org/urn:lsid:zoobank.org:author:FA79392C-048E-4421-BFF8-71A7D58A54C7) AND JON ANDERS KONGSRUD3 (http://zoobank.org/urn:lsid:zoobank.org:author:4AF3F49E-9406-4387-B282-73FA5982029E) 1 Norwegian Institute for Water Research, Region South, Jon Lilletuns vei 3, NO-4879 Grimstad, Norway ([email protected]) 2 Norwegian University of Science and Technology, University Museum, NO-7491 Trondheim, Norway ([email protected]) 3 University Museum of Bergen, University of Bergen, PO Box 7800, NO-5020 Bergen, Norway ([email protected]) * To whom correspondence and reprint requests should be addressed. E-mail: [email protected] Abstract Oug, E., Bakken, T. and Kongsrud, J.A. 2014. Original specimens and type localities of early described polychaete species (Annelida) from Norway, with particular attention to species described by O.F. Müller and M. Sars. Memoirs of Museum Victoria 71: 217–236. Early descriptions of species from Norwegian waters are reviewed, with a focus on the basic requirements for re- assessing their characteristics, in particular, by clarifying the status of the original material and locating sampling sites. A large number of polychaete species from the North Atlantic were described in the early period of zoological studies in the 18th and 19th centuries. -
Convergent Evolution of the Ladder-Like Ventral Nerve Cord in Annelida Conrad Helm1*, Patrick Beckers2, Thomas Bartolomaeus2, Stephan H
Helm et al. Frontiers in Zoology (2018) 15:36 https://doi.org/10.1186/s12983-018-0280-y RESEARCH Open Access Convergent evolution of the ladder-like ventral nerve cord in Annelida Conrad Helm1*, Patrick Beckers2, Thomas Bartolomaeus2, Stephan H. Drukewitz3, Ioannis Kourtesis1, Anne Weigert4, Günter Purschke5, Katrine Worsaae6, Torsten H. Struck7 and Christoph Bleidorn1,8* Abstract Background: A median, segmented, annelid nerve cord has repeatedly been compared to the arthropod and vertebrate nerve cords and became the most used textbook representation of the annelid nervous system. Recent phylogenomic analyses, however, challenge the hypothesis that a subepidermal rope-ladder-like ventral nerve cord (VNC) composed of a paired serial chain of ganglia and somata-free connectives represents either a plesiomorphic or a typical condition in annelids. Results: Using a comparative approach by combining phylogenomic analyses with morphological methods (immunohistochemistry and CLSM, histology and TEM), we compiled a comprehensive dataset to reconstruct the evolution of the annelid VNC. Our phylogenomic analyses generally support previous topologies. However, the so far hard-to-place Apistobranchidae and Psammodrilidae are now incorporated among the basally branching annelids with high support. Based on this topology we reconstruct an intraepidermal VNC as the ancestral state in Annelida. Thus, a subepidermal ladder-like nerve cord clearly represents a derived condition. Conclusions: Based on the presented data, a ladder-like appearance of the ventral nerve cord evolved repeatedly, and independently of the transition from an intraepidermal to a subepidermal cord during annelid evolution. Our investigations thereby propose an alternative set of neuroanatomical characteristics for the last common ancestor of Annelida or perhaps even Spiralia. -
Identification Guide to the Planktonic Polychaete Larvae Around the Island of Helgoland (German Bight)
HELGOL.~NDER MEERESUNTERSUCHUNGEN Helgol/inder Meeresunters. 48, 1-58 (1994) Identification guide to the planktonic polychaete larvae around the island of Helgoland (German Bight) S. Plate* & E. Husemann* * Biologische Anstalt Helgoland (Meeresstation); D-27483 Helgoland, Federal Republic of Germany ABSTRACT: The purpose of this work is to provide the means of identifying the planktonic larvae of the polychaete species appearing in the plankton around the island of Helgoland (North Sea). During a three-year survey in this area, the larvae of 54 species out of 24 families belonging to the orders Orbiniida, Spionida, Capitelhda, Phyllodocida, Oweniida, Terebelhda, Sabelhda and the former Archiannelida have been recorded. Illustrated keys to the families, genera and species are presented. To facilitate the identification, additional descriptions and information about the seasonal appearance of the species are given. INTRODUCTION More than 13 000 species of polychaetous annelids take part in the marine benthos communities worldwide. Their distribution, species composition and population density are monitored within various benthos surveys. For the North Sea, especially the German Bight and the Wadden Sea, much information about the benthic polychaete fauna is available (Caspers, 1950; Stripp, 1969; DSrjes, 1977; Rachor & Gerlach, 1978; Gillandt, 1979; Salzwedel et al., 1985; Rachor, 1990; Bosselmann, 1991; Kr6ncke, 1991). In contrast, the holoplanktonic polychaete species and the meroplanktonic polychaete larvae, which are only part of the plankton during a more or less expanded phase of their ontogenesis, have never received much attention. Meroplanktonic polychaete larvae are seldomly recorded during studies monitoring the North Sea plankton (Smidt, 1951; Giere, 1968; Fransz, 1981; Bosselmann, 1989; Belgrano et al., 1990). -
Soil-Dwelling Polychaetes: Enigmatic As Ever? Some Hints on Their
Contributions to Zoology, 70 (3) 127-138 (2001) SPB Academic Publishing bv, The Hague Soil-dwelling polychaetes: enigmatic as ever? Some hints on their phylogenetic relationships as suggested by a maximum parsimony analysis of 18S rRNA gene sequences ³ Emilia Rota Patrick Martin² & Christer Erséus ¹, 1 di Dipartimento Biologia Evolutivei. Universitd di Siena, via P. A. Mattioli 4. IT-53100 Siena, Italy, e-mail: 2 Institut des Sciences naturelles de des [email protected]; royal Belgique, Biologic Eaux donees, 29 rue Vautier, B-1000 e-mail: 3 Bruxelles, Belgium, [email protected]; Department of Invertebrate Zoology, Swedish Museum of Natural History, Box 50007, SE-104 05 Stockholm, Sweden, e-mail: [email protected] Keywords: Terrestrial Polychaeta, Parergodrilus heideri, Stygocapitella subterranea, Hrabeiella I8S rRNA periglandulata, gene, molecular phylogeny, rapid radiation Abstract Collectionof new specimens 130 DNA extraction, amplification and sequencing 130 Alignment To re-evaluate 130 the various hypotheses on the systematic position of Phylogenetic analyses 130 Parergodrilus heideri Reisinger, 1925 and Hrabeiella Results 132 periglandulata Pizl & Chalupský, 1984,the sole truly terrestrial Discussion 132 non-clitellateannelidsknown to date, their phylogenetic relation- ships Acknowledgements 136 were investigated using a data set of new 18S rDNA References 136 of sequences these and other five relevant annelid taxa, including an unknown of species Ctenodrilidae, as well as homologous sequences available for 18 already polychaetes, one aphano- neuran, 11 clitellates, two pogonophorans, one echiuran, one Introduction sipunculan, three molluscs and two arthropods. Two different alignments were constructed, according to analgorithmic method terrestrial forms constitute (Clustal Truly a tiny minority W) and on the basis of a secondary structure model non-clitellate annelids, (DCSE), A maximum parsimony analysis was performed with among only represented by arthropods asan unambiguous outgroup. -
Polychaete Worms Definitions and Keys to the Orders, Families and Genera
THE POLYCHAETE WORMS DEFINITIONS AND KEYS TO THE ORDERS, FAMILIES AND GENERA THE POLYCHAETE WORMS Definitions and Keys to the Orders, Families and Genera By Kristian Fauchald NATURAL HISTORY MUSEUM OF LOS ANGELES COUNTY In Conjunction With THE ALLAN HANCOCK FOUNDATION UNIVERSITY OF SOUTHERN CALIFORNIA Science Series 28 February 3, 1977 TABLE OF CONTENTS PREFACE vii ACKNOWLEDGMENTS ix INTRODUCTION 1 CHARACTERS USED TO DEFINE HIGHER TAXA 2 CLASSIFICATION OF POLYCHAETES 7 ORDERS OF POLYCHAETES 9 KEY TO FAMILIES 9 ORDER ORBINIIDA 14 ORDER CTENODRILIDA 19 ORDER PSAMMODRILIDA 20 ORDER COSSURIDA 21 ORDER SPIONIDA 21 ORDER CAPITELLIDA 31 ORDER OPHELIIDA 41 ORDER PHYLLODOCIDA 45 ORDER AMPHINOMIDA 100 ORDER SPINTHERIDA 103 ORDER EUNICIDA 104 ORDER STERNASPIDA 114 ORDER OWENIIDA 114 ORDER FLABELLIGERIDA 115 ORDER FAUVELIOPSIDA 117 ORDER TEREBELLIDA 118 ORDER SABELLIDA 135 FIVE "ARCHIANNELIDAN" FAMILIES 152 GLOSSARY 156 LITERATURE CITED 161 INDEX 180 Preface THE STUDY of polychaetes used to be a leisurely I apologize to my fellow polychaete workers for occupation, practised calmly and slowly, and introducing a complex superstructure in a group which the presence of these worms hardly ever pene- so far has been remarkably innocent of such frills. A trated the consciousness of any but the small group great number of very sound partial schemes have been of invertebrate zoologists and phylogenetlcists inter- suggested from time to time. These have been only ested in annulated creatures. This is hardly the case partially considered. The discussion is complex enough any longer. without the inclusion of speculations as to how each Studies of marine benthos have demonstrated that author would have completed his or her scheme, pro- these animals may be wholly dominant both in num- vided that he or she had had the evidence and inclina- bers of species and in numbers of specimens. -
An Annotated Checklist of the Marine Macroinvertebrates of Alaska David T
NOAA Professional Paper NMFS 19 An annotated checklist of the marine macroinvertebrates of Alaska David T. Drumm • Katherine P. Maslenikov Robert Van Syoc • James W. Orr • Robert R. Lauth Duane E. Stevenson • Theodore W. Pietsch November 2016 U.S. Department of Commerce NOAA Professional Penny Pritzker Secretary of Commerce National Oceanic Papers NMFS and Atmospheric Administration Kathryn D. Sullivan Scientific Editor* Administrator Richard Langton National Marine National Marine Fisheries Service Fisheries Service Northeast Fisheries Science Center Maine Field Station Eileen Sobeck 17 Godfrey Drive, Suite 1 Assistant Administrator Orono, Maine 04473 for Fisheries Associate Editor Kathryn Dennis National Marine Fisheries Service Office of Science and Technology Economics and Social Analysis Division 1845 Wasp Blvd., Bldg. 178 Honolulu, Hawaii 96818 Managing Editor Shelley Arenas National Marine Fisheries Service Scientific Publications Office 7600 Sand Point Way NE Seattle, Washington 98115 Editorial Committee Ann C. Matarese National Marine Fisheries Service James W. Orr National Marine Fisheries Service The NOAA Professional Paper NMFS (ISSN 1931-4590) series is pub- lished by the Scientific Publications Of- *Bruce Mundy (PIFSC) was Scientific Editor during the fice, National Marine Fisheries Service, scientific editing and preparation of this report. NOAA, 7600 Sand Point Way NE, Seattle, WA 98115. The Secretary of Commerce has The NOAA Professional Paper NMFS series carries peer-reviewed, lengthy original determined that the publication of research reports, taxonomic keys, species synopses, flora and fauna studies, and data- this series is necessary in the transac- intensive reports on investigations in fishery science, engineering, and economics. tion of the public business required by law of this Department. -
FISH310: Biology of Shellfishes
FISH310: Biology of Shellfishes Lecture Slides #3 Phylogeny and Taxonomy sorting organisms How do we classify animals? Taxonomy: naming Systematics: working out relationships among organisms Classification • All classification schemes are, in part, artificial to impose order (need to start some where using some information) – Cell number: • Acellular, One cell (_________), or More than one cell (metazoa) – Metazoa: multicellular, usu 2N, develop from blastula – Body Symmetry – Developmental Pattern (Embryology) – Evolutionary Relationship Animal Kingdom Eumetazoa: true animals Corals Anemones Parazoa: no tissues Body Symmetry • Radial symmetry • Phyla Cnidaria and Ctenophora • Known as Radiata • Any cut through center ! 2 ~ “mirror” pieces • Bilateral symmetry • Other phyla • Bilateria • Cut longitudinally to achieve mirror halves • Dorsal and ventral sides • Anterior and posterior ends • Cephalization and central nervous system • Left and right sides • Asymmetry uncommon (Porifera) Form and Life Style • The symmetry of an animal generally fits its lifestyle • Sessile or planktonic organisms often have radial symmetry • Highest survival when meet the environment equally well from all sides • Actively moving animals have bilateral symmetry • Head end is usually first to encounter food, danger, and other stimuli Developmental Pattern • Metazoa divided into two groups based on number of germ layers formed during embryogenesis – differs between radiata and bilateria • Diploblastic • Triploblastic Developmental Pattern.. • Radiata are diploblastic: two germ layers • Ectoderm, becomes the outer covering and, in some phyla, the central nervous system • Endoderm lines the developing digestive tube, or archenteron, becomes the lining of the digestive tract and organs derived from it, such as the liver and lungs of vertebrates Diploblastic http://faculty.mccfl.edu/rizkf/OCE1001/Images/cnidaria1.jpg Developmental Pattern…. -
An Ordovician Lobopodian from the Soom Shale Lagerstätte, South Africa
[Palaeontology, Vol. 52, Part 3, 2009, pp. 561–567] AN ORDOVICIAN LOBOPODIAN FROM THE SOOM SHALE LAGERSTA¨ TTE, SOUTH AFRICA by ROWAN J. WHITTLE*,à, SARAH E. GABBOTT*, RICHARD J. ALDRIDGE* and JOHANNES THERON *Department of Geology, University of Leicester, Leicester LE1 7RH, UK; e-mails: [email protected]; [email protected] Department of Geology, University of Stellenbosch, Private Bag XI, Stellenbosch 7602, South Africa; e-mail: [email protected] àPresent address: British Antarctic Survey, Madingley Road, Cambridge, CB3 0ET, UK; e-mail: [email protected] Typescript received 18 July 2008; accepted in revised form 27 January 2009 Abstract: The first lobopodian known from the Ordovician and Carboniferous. The new fossil preserves an annulated is described from the Soom Shale Lagersta¨tte, South Africa. trunk, lobopods with clear annulations, and curved claws. It The organism shows features homologous to Palaeozoic mar- represents a rare record of a benthic organism from the ine lobopodians described from the Middle Cambrian Bur- Soom Shale, and demonstrates intermittent water oxygena- gess Shale, the Lower Cambrian Chengjiang biota, the Lower tion during the deposition of the unit. Cambrian Sirius Passet Lagersta¨tte and the Lower Cambrian of the Baltic. The discovery provides a link between marine Key words: Lagersta¨tte, lobopodian, Ordovician, Soom Cambrian lobopodians and younger forms from the Silurian Shale. Cambrian lobopodians are a diverse group showing a in an intracratonic basin with water depths of approxi- great variety of body shape, size and ornamentation. mately 100 m (Gabbott 1999). Dominantly quiet water However, they share a segmented onychophoran-like conditions are indicated by a lack of flow-induced sedi- body, paired soft-skinned annulated lobopods, and in mentary structures and the taphonomy of the fossils.