New Data on Spermatogenic Cyst Formation and Cellular Composition of the Testis in a Marine Gastropod, Littorina Saxatilis
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New Zealand's Genetic Diversity
1.13 NEW ZEALAND’S GENETIC DIVERSITY NEW ZEALAND’S GENETIC DIVERSITY Dennis P. Gordon National Institute of Water and Atmospheric Research, Private Bag 14901, Kilbirnie, Wellington 6022, New Zealand ABSTRACT: The known genetic diversity represented by the New Zealand biota is reviewed and summarised, largely based on a recently published New Zealand inventory of biodiversity. All kingdoms and eukaryote phyla are covered, updated to refl ect the latest phylogenetic view of Eukaryota. The total known biota comprises a nominal 57 406 species (c. 48 640 described). Subtraction of the 4889 naturalised-alien species gives a biota of 52 517 native species. A minimum (the status of a number of the unnamed species is uncertain) of 27 380 (52%) of these species are endemic (cf. 26% for Fungi, 38% for all marine species, 46% for marine Animalia, 68% for all Animalia, 78% for vascular plants and 91% for terrestrial Animalia). In passing, examples are given both of the roles of the major taxa in providing ecosystem services and of the use of genetic resources in the New Zealand economy. Key words: Animalia, Chromista, freshwater, Fungi, genetic diversity, marine, New Zealand, Prokaryota, Protozoa, terrestrial. INTRODUCTION Article 10b of the CBD calls for signatories to ‘Adopt The original brief for this chapter was to review New Zealand’s measures relating to the use of biological resources [i.e. genetic genetic resources. The OECD defi nition of genetic resources resources] to avoid or minimize adverse impacts on biological is ‘genetic material of plants, animals or micro-organisms of diversity [e.g. genetic diversity]’ (my parentheses). -
Genomic Profiling Reveals High Frequency of DNA Repair Genetic
www.nature.com/scientificreports OPEN Genomic profling reveals high frequency of DNA repair genetic aberrations in gallbladder cancer Reham Abdel‑Wahab1,9, Timothy A. Yap2, Russell Madison4, Shubham Pant1,2, Matthew Cooke4, Kai Wang4,5,7, Haitao Zhao8, Tanios Bekaii‑Saab6, Elif Karatas1, Lawrence N. Kwong3, Funda Meric‑Bernstam2, Mitesh Borad6 & Milind Javle1,10* DNA repair gene aberrations (GAs) occur in several cancers, may be prognostic and are actionable. We investigated the frequency of DNA repair GAs in gallbladder cancer (GBC), association with tumor mutational burden (TMB), microsatellite instability (MSI), programmed cell death protein 1 (PD‑1), and its ligand (PD‑L1) expression. Comprehensive genomic profling (CGP) of 760 GBC was performed. We investigated GAs in 19 DNA repair genes including direct DNA repair genes (ATM, ATR , BRCA1, BRCA2, FANCA, FANCD2, MLH1, MSH2, MSH6, PALB2, POLD1, POLE, PRKDC, and RAD50) and caretaker genes (BAP1, CDK12, MLL3, TP53, and BLM) and classifed patients into 3 groups based on TMB level: low (< 5.5 mutations/Mb), intermediate (5.5–19.5 mutations/Mb), and high (≥ 19.5 mutations/Mb). We assessed MSI status and PD‑1 & PD‑L1 expression. 658 (86.6%) had at least 1 actionable GA. Direct DNA repair gene GAs were identifed in 109 patients (14.2%), while 476 (62.6%) had GAs in caretaker genes. Both direct and caretaker DNA repair GAs were signifcantly associated with high TMB (P = 0.0005 and 0.0001, respectively). Tumor PD‑L1 expression was positive in 119 (15.6%), with 17 (2.2%) being moderate or high. DNA repair GAs are relatively frequent in GBC and associated with coexisting actionable mutations and a high TMB. -
Mitosis Vs. Meiosis
Mitosis vs. Meiosis In order for organisms to continue growing and/or replace cells that are dead or beyond repair, cells must replicate, or make identical copies of themselves. In order to do this and maintain the proper number of chromosomes, the cells of eukaryotes must undergo mitosis to divide up their DNA. The dividing of the DNA ensures that both the “old” cell (parent cell) and the “new” cells (daughter cells) have the same genetic makeup and both will be diploid, or containing the same number of chromosomes as the parent cell. For reproduction of an organism to occur, the original parent cell will undergo Meiosis to create 4 new daughter cells with a slightly different genetic makeup in order to ensure genetic diversity when fertilization occurs. The four daughter cells will be haploid, or containing half the number of chromosomes as the parent cell. The difference between the two processes is that mitosis occurs in non-reproductive cells, or somatic cells, and meiosis occurs in the cells that participate in sexual reproduction, or germ cells. The Somatic Cell Cycle (Mitosis) The somatic cell cycle consists of 3 phases: interphase, m phase, and cytokinesis. 1. Interphase: Interphase is considered the non-dividing phase of the cell cycle. It is not a part of the actual process of mitosis, but it readies the cell for mitosis. It is made up of 3 sub-phases: • G1 Phase: In G1, the cell is growing. In most organisms, the majority of the cell’s life span is spent in G1. • S Phase: In each human somatic cell, there are 23 pairs of chromosomes; one chromosome comes from the mother and one comes from the father. -
Exploring the Interplay of Telomerase Reverse Transcriptase and Β-Catenin in Hepatocellular Carcinoma
cancers Review Exploring the Interplay of Telomerase Reverse Transcriptase and β-Catenin in Hepatocellular Carcinoma Srishti Kotiyal and Kimberley Jane Evason * Department of Oncological Sciences, Department of Pathology, and Huntsman Cancer Institute, University of Utah, Salt Lake City, UT 84112, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-801-587-4606 Simple Summary: Liver cancer is one of the deadliest human cancers. Two of the most common molecular aberrations in liver cancer are: (1) activating mutations in the gene encoding β-catenin (CTNNB1); and (2) promoter mutations in telomerase reverse transcriptase (TERT). Here, we review recent findings regarding the interplay between TERT and β-catenin in order to better understand their role in liver cancer. Abstract: Hepatocellular carcinoma (HCC) is one of the deadliest human cancers. Activating muta- tions in the telomerase reverse transcriptase (TERT) promoter (TERTp) and CTNNB1 gene encoding β-catenin are widespread in HCC (~50% and ~30%, respectively). TERTp mutations are predicted to increase TERT transcription and telomerase activity. This review focuses on exploring the role of TERT and β-catenin in HCC and the current findings regarding their interplay. TERT can have contradictory effects on tumorigenesis via both its canonical and non-canonical functions. As a critical regulator of proliferation and differentiation in progenitor and stem cells, activated β-catenin drives HCC; however, inhibiting endogenous β-catenin can also have pro-tumor effects. Clinical studies revealed a significant concordance between TERTp and CTNNB1 mutations in HCC. In Citation: Kotiyal, S.; Evason, K.J. stem cells, TERT acts as a co-factor in β-catenin transcriptional complexes driving the expression Exploring the Interplay of Telomerase of WNT/β-catenin target genes, and β-catenin can bind to the TERTp to drive its transcription. -
Telomere and Telomerase in Oncology
Cell Research (2002); 12(1):1-7 http://www.cell-research.com REVIEW Telomere and telomerase in oncology JIAO MU*, LI XIN WEI International Joint Cancer Institute, Second Military Medical University, Shanghai 200433, China ABSTRACT Shortening of the telomeric DNA at the chromosome ends is presumed to limit the lifespan of human cells and elicit a signal for the onset of cellular senescence. To continually proliferate across the senescent checkpoint, cells must restore and preserve telomere length. This can be achieved by telomerase, which has the reverse transcriptase activity. Telomerase activity is negative in human normal somatic cells but can be detected in most tumor cells. The enzyme is proposed to be an essential factor in cell immortalization and cancer progression. In this review we discuss the structure and function of telomere and telomerase and their roles in cell immortalization and oncogenesis. Simultaneously the experimental studies of telomerase assays for cancer detection and diagnosis are reviewed. Finally, we discuss the potential use of inhibitors of telomerase in anti-cancer therapy. Key words: Telomere, telomerase, cancer, telomerase assay, inhibitor. Telomere and cell replicative senescence base pairs of the end of telomeric DNA with each Telomeres, which are located at the end of round of DNA replication. Hence, the continual chromosome, are crucial to protect chromosome cycles of cell growth and division bring on progress- against degeneration, rearrangment and end to end ing telomere shortening[4]. Now it is clear that te- fusion[1]. Human telomeres are tandemly repeated lomere shortening is responsible for inducing the units of the hexanucleotide TTAGGG. The estimated senescent phenotype that results from repeated cell length of telomeric DNA varies from 2 to 20 kilo division, but the mechanism how a short telomere base pairs, depending on factors such as tissue type induces the senescence is still unknown. -
Human Inheritable Genetic Modifications
Human Inheritable Genetic Modifications Assessing Scientific, Ethical, Religious, and Policy Issues Prepared by the American Association for the Advancement of Science Mark S. Frankel Audrey R. Chapman September 2000 http://www.aaas.org/spp/dspp/sfrl/germline/main.htm i This report is the product of a collaboration between the authors and a working group convened to advise the authors, and does not necessarily represent the views of American Association for the Advancement of Science or The Greenwall Foundation, which funded this study. Copyright © 2000 American Association for the Advancement of Science Cover: Designed and created by the Office of Publication Services at the American Association for the Advancement of Science. ii Table of Contents Acknowledgements…………………………………………………v Introduction………………………………………………………….1 Major Findings, Concerns, and Recommendations…………………7 Defining Inheritable Genetic Modific ation……………….………..11 Therapeutic Need…………………………………………………..13 Efficacy of Different Approaches to IGM…………………………15 Safety Issues……………………………………………………….23 Inadvertent Germ Line Modific ation………………………………26 Religious Perspectives……………………………………………..27 Ethical Analysis and Considerations……………………………….32 Ethically Appropriate Applications of IGM: Therapy versus Enhancement.………………………………………………………40 Reproductive Rights………………………………………………..44 Balancing Scientific Freedom and Responsibility…………………45 Oversight…………………………………………………………...46 Conclusion.…………………………………………………………56 Glossary…………………………………………………………….59 Appendix A: AAAS Working Group Members……………………65 -
Periodic Production of Retinoic Acid by Meiotic and Somatic Cells Coordinates Four Transitions in Mouse Spermatogenesis
Periodic production of retinoic acid by meiotic and somatic cells coordinates four transitions in mouse spermatogenesis Tsutomu Endoa,1,2, Elizaveta Freinkmana,3, Dirk G. de Rooija, and David C. Pagea,b,c,1 aWhitehead Institute, Cambridge, MA 02142; bDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139; and cHoward Hughes Medical Institute, Whitehead Institute, Cambridge, MA 02142 Contributed by David C. Page, October 4, 2017 (sent for review June 22, 2017; reviewed by Marvin L. Meistrich and Kyle E. Orwig) Mammalian spermatogenesis is an elaborately organized differenti- to become spermatozoa. Finally, these spermatozoa are released ation process, starting with diploid spermatogonia, which include into the lumen of seminiferous tubules. germ-line stem cells, and ending with haploid spermatozoa. The The four key transitions of spermatogenesis are precisely co- process involves four pivotal transitions occurring in physical prox- ordinated in time and space and occur in close physical and tem- imity: spermatogonial differentiation, meiotic initiation, initiation of poral proximity, cyclically, with an 8.6-d periodicity in mice (9). The spermatid elongation, and release of spermatozoa. We report how mouse testis is composed of structures known as seminiferous tu- the four transitions are coordinated in mice. Two premeiotic transi- bules (Fig. S1A); within tubule cross-sections, one sees stereotypical tions, spermatogonial differentiation and meiotic initiation, were collections or associations of germ cells at various steps of differ- known to be coregulated by an extrinsic signal, retinoic acid (RA). Our entiation (Fig. 1). The precise coordination of these steps is called the “cycle of the seminiferous epithelium” (or “seminiferous cy- chemical manipulations of RA levels in mouse testes now reveal cle”). -
Ploidy of Living Clones of Human Somatic Cells Determined by Mensuration at Metaphase
PLOIDY OF LIVING CLONES OF HUMAN SOMATIC CELLS DETERMINED BY MENSURATION AT METAPHASE C. A . SPRAGUE, H. HOEHN, and G. M. MARTIN. From the Department of Pathology, University of Washington, Seattle, Washington 98195 INTRODUCTION the 17th gestational week of a male fetus. General culture conditions were as previously described (11) . Tetraploid clones have been useful for studies of Media was a modification of the Dulbecco-Vogt somatic segregation (10), mutation (4), and the formulation (3) with 16% (vol/vol) heat-inactivated regulation of protein synthesis (14, 13, 12) . With fetal calf serum . Cytochalasin B treatments (2 µg/ml the availability of various heterochromatin mark- for 36 h) for induction of tetraploidy (6) were carried ers, such material is also proving valuable for out 6-8 h after dilute plating of 40-60 cells in 4 nil of cytological studies of interphase (5). Finally, clones media in 60-mm plastic Petri dishes . The cultures of cells with various ploidies should serve as very were then fed every third day . Between days 10 and 15, Downloaded from http://rupress.org/jcb/article-pdf/60/3/781/1387098/781.pdf by guest on 03 October 2021 precise and convenient standards for flow micro- consecutive clones were analyzed by a two-step pro- cedure : (a) four to 12 living mitotic cells were photo- fluorometric assays of cell DNA (8, 1) . We report graphed at the stage of distinct equatorial alignment here a rapid and simple technique for the diagnosis of chromosomes using a Nikon inverted microscope of ploidy in clones of somatic cells derived from (model MS) with a 20X DLL objective and phase human skin and amniotic fluid . -
Human Genome Editing
Human Genome Editing ETHICAL AND POLICY CONSIDERATIONS – POLICY BRIEF – http://bit.ly/2hi1pAR B.M. KNOPPERS, M.T. NGUYEN, F. NOOHI & E. KLEIDERMAN CENTRE OF GENOMICS AND POLICY (CGP) MCGILL UNIVERSITY AND GÉNOME QUÉBEC INNOVATION CENTRE MONTRÉAL, MARS 2018 Génome Québec Established in 2000, Génome Québec is a private, non-profit organization with its headquarters in Montréal. Its mission is to catalyze the development and excellence of genomics research and promote its integration and democratization. Génome Québec is recognized for its assertive leadership in promoting an optimal environment conducive to the advancement of genomics research and the integration of its benefits into priority sectors for Québec. A strong culture of ethics drives its mission, providing assurance that research will be conducted within ethical guidelines acceptable to society at large. To promote a better understanding and support decision making regarding the complex issues raised by human genome editing, Génome Québec asked the Centre of Genomics and Policy to produce a Policy Brief on the subject. This document is the result of analysis and research conducted by the authors of the CGP. The views expressed herein do not necessarily reflect those of Génome Québec. Centre of Genomics and Policy (CGP) An integral part of the McGill University and Génome Québec Innovation Centre, the Centre of Genomics and Policy (CGP) is at the crossroads of the legal, medical and public policy fields. Within a multidisciplinary perspective and in cooperation with national and international partners, the CGP analyzes the ethical, legal and social norms that influence the many aspects involved in health prevention, protection and promotion. -
An Ordovician Lobopodian from the Soom Shale Lagerstätte, South Africa
[Palaeontology, Vol. 52, Part 3, 2009, pp. 561–567] AN ORDOVICIAN LOBOPODIAN FROM THE SOOM SHALE LAGERSTA¨ TTE, SOUTH AFRICA by ROWAN J. WHITTLE*,à, SARAH E. GABBOTT*, RICHARD J. ALDRIDGE* and JOHANNES THERON *Department of Geology, University of Leicester, Leicester LE1 7RH, UK; e-mails: [email protected]; [email protected] Department of Geology, University of Stellenbosch, Private Bag XI, Stellenbosch 7602, South Africa; e-mail: [email protected] àPresent address: British Antarctic Survey, Madingley Road, Cambridge, CB3 0ET, UK; e-mail: [email protected] Typescript received 18 July 2008; accepted in revised form 27 January 2009 Abstract: The first lobopodian known from the Ordovician and Carboniferous. The new fossil preserves an annulated is described from the Soom Shale Lagersta¨tte, South Africa. trunk, lobopods with clear annulations, and curved claws. It The organism shows features homologous to Palaeozoic mar- represents a rare record of a benthic organism from the ine lobopodians described from the Middle Cambrian Bur- Soom Shale, and demonstrates intermittent water oxygena- gess Shale, the Lower Cambrian Chengjiang biota, the Lower tion during the deposition of the unit. Cambrian Sirius Passet Lagersta¨tte and the Lower Cambrian of the Baltic. The discovery provides a link between marine Key words: Lagersta¨tte, lobopodian, Ordovician, Soom Cambrian lobopodians and younger forms from the Silurian Shale. Cambrian lobopodians are a diverse group showing a in an intracratonic basin with water depths of approxi- great variety of body shape, size and ornamentation. mately 100 m (Gabbott 1999). Dominantly quiet water However, they share a segmented onychophoran-like conditions are indicated by a lack of flow-induced sedi- body, paired soft-skinned annulated lobopods, and in mentary structures and the taphonomy of the fossils. -
Dedifferentiation, Transdifferentiation, and Reprogramming: Future Directions in Regenerative Medicine
82 Dedifferentiation, Transdifferentiation, and Reprogramming: Future Directions in Regenerative Medicine Cristina Eguizabal, PhD1 Nuria Montserrat, PhD1 Anna Veiga, PhD1,2 Juan Carlos Izpisua Belmonte, PhD1,3 1 Center for Regenerative Medicine in Barcelona Address for correspondence and reprint requests Juan Carlos Izpisua 2 Reproductive Medicine Service, Institut Universitari Dexeus, Belmonte, PhD, Gene Expression Laboratory, The Salk Institute for Barcelona, Spain Biological Studies, 10010 North Torrey Pines Road, La Jolla, CA 93027 3 Gene Expression Laboratory, The Salk Institute for Biological Studies, (e-mail: [email protected]). La Jolla, California Semin Reprod Med 2013;31:82–94 Abstract The main goal of regenerative medicine is to replace damaged tissue. To do this it is Keywords necessary to understand in detail the whole regeneration process including differenti- ► regenerative ated cells that can be converted into progenitor cells (dedifferentiation), cells that can medicine switch into another cell type (transdifferentiation), and somatic cells that can be ► stem cells induced to become pluripotent cells (reprogramming). By studying the regenerative ► dedifferentiation processes in both nonmammal and mammal models, natural or artificial processes ► transdifferentiation could underscore the molecular and cellular mechanisms behind these phenomena and ► reprogramming be used to create future regenerative strategies for humans. To understand any regenerative system, it is crucial to find the potency and differentiate and how they can revert to pluri- cellular origins of renewed tissues. Using techniques like potency (reprogramming) or switch lineages (dedifferentia- genetic lineage tracing and single-cell transplantation helps tion and transdifferentiation). to identify the route of regenerative sources. These tools were We synthesize the studies of different model systems to developed first in nonmammal models (flies, amphibians, and highlight recent insights that are integrating the field. -
The Comparative Embryology of Sponges Alexander V
The Comparative Embryology of Sponges Alexander V. Ereskovsky The Comparative Embryology of Sponges Alexander V. Ereskovsky Department of Embryology Biological Faculty Saint-Petersburg State University Saint-Petersburg Russia [email protected] Originally published in Russian by Saint-Petersburg University Press ISBN 978-90-481-8574-0 e-ISBN 978-90-481-8575-7 DOI 10.1007/978-90-481-8575-7 Springer Dordrecht Heidelberg London New York Library of Congress Control Number: 2010922450 © Springer Science+Business Media B.V. 2010 No part of this work may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying, microfilming, recording or otherwise, without written permission from the Publisher, with the exception of any material supplied specifically for the purpose of being entered and executed on a computer system, for exclusive use by the purchaser of the work. Printed on acid-free paper Springer is part of Springer Science+Business Media (www.springer.com) Preface It is generally assumed that sponges (phylum Porifera) are the most basal metazoans (Kobayashi et al. 1993; Li et al. 1998; Mehl et al. 1998; Kim et al. 1999; Philippe et al. 2009). In this connection sponges are of a great interest for EvoDevo biolo- gists. None of the problems of early evolution of multicellular animals and recon- struction of a natural system of their main phylogenetic clades can be discussed without considering the sponges. These animals possess the extremely low level of tissues organization, and demonstrate extremely low level of processes of gameto- genesis, embryogenesis, and metamorphosis. They show also various ways of advancement of these basic mechanisms that allow us to understand processes of establishment of the latter in the early Metazoan evolution.