Systematics, Evolution and Phylogeny of Annelida – a Morphological Perspective
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Full Curriculum Vitae
C. R. Smith July 2017 Curriculum Vitae CRAIG RANDALL SMITH Address: Department of Oceanography University of Hawaii at Manoa 1000 Pope Road Honolulu, HI 96822 Telephone: 808-956-7776 email: [email protected] Education: B.S., 1977, with high honors, Biological Science, Michigan State University Ph.D., Dec 1983, Biological Oceanography, University of California at San Diego, Scripps Institution of Oceanography Professional Experience: 1975-1976: Teaching Assistant, Biological Science Program, Michigan State University 1976: Summer Student Fellow, Woods Hole Oceanographic Institution 1976-1977: Research Assistant, Microbiology Department, Michigan State University 1977-1981: Research Assistant, Program for the Study of Sub- Seabed Disposal of Radioactive Waste, Scripps Institution of Oceanography 1981-1983: Associate Investigator, O.N.R. grant entitled, "The Impact of Large Organic Falls on a Bathyal Benthic Community," Scripps Institution of Oceanography 1983-1984: Postdoctoral Scholar, Woods Hole Oceanographic Institution 1985-1986: Postdoctoral Research Associate, School of Oceanography, University of Washington 1986-1988: Research Assistant Professor, School of Oceanography, University of Washington 1988-1995: Associate Professor, Department of Oceanography, University of Hawaii at Manoa 1995-1998, 2004-2007: Chair, Biological Oceanography Division, University of Hawaii at Manoa 1997-1998, 2006-2007: Associate Chair, Department of Oceanography 1995-present: Professor, Department of Oceanography, University of Hawaii at Manoa Major Research -
Boccardia Proboscidea Class: Polychaeta, Sedentaria, Canalipalpata
Phylum: Annelida Boccardia proboscidea Class: Polychaeta, Sedentaria, Canalipalpata Order: Spionida, Spioniformia A burrowing spionid worm Family: Spionidae Taxonomy: Boccardia proboscidea’s senior Trunk: subjective synonym, Polydora californica Posterior: Pygidium is a round, flaring (Treadwell, 1914) and an un-typified name, disc with four unequal lobes where dorsal Spio californica (Fewkes, 1889) were both lobes are smaller (Fig. 4) (Hartman 1969). suppressed in 2012 by the International Parapodia: Biramous after first setiger. Commission on Zoological Nomenclature Podia on the first setiger are not lobed, small (ICZN, case 3520). The widely cited and and inconspicuous. The second setiger's used name, Boccardia proboscidea parapodial lobes become twice as large as (Hartman, 1940) was conserved (ICZN the first's, and continue to worm posterior. 2012). Setae (chaetae): All setae are simple and in- clude bunches of short, capillary spines to se- Description tiger six (except for modified setiger five) Size: Specimens up to 30–35 mm in length (Figs. 5a, b). A transverse row of and 1.5 mm in width, where length extends approximately eight neuropodial uncini with age (Hartman 1940). The illustrated (hooded hooks) with bifid (two-pronged) tips specimen has approximately 130 segments begins on setiger seven and continues to (Fig. 1). posterior end (Fig. 5e), with bunches of Color: Yellow-orange with red branchiae capillary setae below them (until setiger 11). and dusky areas around prostomium and Notosetae of setiger five are heavy, dark and parapodia (Hartman 1969). Sato-Okoshi arranged vertically in two rows of five with and Okoshi (1997) report black pigment fol- pairs of long, falcate spines (Fig. -
Annelida, Polychaeta, Chaetopteridae), with Re- Chaetopteridae), with Re-Description of M
2 We would like to thank the Zoological Journal of the Linnean Society, The Linnean Society of London and Blackwell Publishing for accepting our manuscript entitled “Description of a Description of a new species of Mesochaetopterus (Annelida, Polychaeta, new species of Mesochaetopterus (Annelida, Polychaeta, Chaetopteridae), with re- Chaetopteridae), with re-description of M. xerecus and an approach to the description of M. xerecus and an approach to the phylogeny of the family”, which has phylogeny of the family been published in the Journal issue Zool. J. Linnean Soc. 2008, 152: 201–225. D. MARTIN1,* J. GIL1, J. CARRERAS-CARBONELL1 and M. BHAUD2 By posting this version of the manuscript (i.e. pre-printed), we agree not to sell or reproduce the Article or any part of it for commercial purposes (i.e. for monetary gain on your own 1Centre d'Estudis Avançats de Blanes (CSIC), Carrer d’accés a la Cala Sant Francesc 14, account or on that of a third party, or for indirect financial gain by a commercial entity), and 17300 Blanes (Girona), Catalunya (Spain). we expect the same from the users. 2 Observatoire Océanologique de Banyuls, Université P. et M. Curie - CNRS, BP 44, 66650 As soon as possible, we will add a link to the published version of the Article at the editors Banyuls-sur-Mer, Cedex, France. web site. * Correspondence author: Daniel Martin. Centre d'Estudis Avançats de Blanes (CSIC), Carrer Daniel Martin, Joao Gil, Michel Bhaud & Josep Carreras-Carbonell d’accés a la Cala Sant Francesc 14, 17300 Blanes (Girona), Catalunya (Spain). Tel. +34972336101; Fax: +34 972337806; E-mail: [email protected]. -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Biodiversity and Trophic Ecology of Hydrothermal Vent Fauna Associated with Tubeworm Assemblages on the Juan De Fuca Ridge
Biogeosciences, 15, 2629–2647, 2018 https://doi.org/10.5194/bg-15-2629-2018 © Author(s) 2018. This work is distributed under the Creative Commons Attribution 4.0 License. Biodiversity and trophic ecology of hydrothermal vent fauna associated with tubeworm assemblages on the Juan de Fuca Ridge Yann Lelièvre1,2, Jozée Sarrazin1, Julien Marticorena1, Gauthier Schaal3, Thomas Day1, Pierre Legendre2, Stéphane Hourdez4,5, and Marjolaine Matabos1 1Ifremer, Centre de Bretagne, REM/EEP, Laboratoire Environnement Profond, 29280 Plouzané, France 2Département de sciences biologiques, Université de Montréal, C.P. 6128, succursale Centre-ville, Montréal, Québec, H3C 3J7, Canada 3Laboratoire des Sciences de l’Environnement Marin (LEMAR), UMR 6539 9 CNRS/UBO/IRD/Ifremer, BP 70, 29280, Plouzané, France 4Sorbonne Université, UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France 5CNRS, UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France Correspondence: Yann Lelièvre ([email protected]) Received: 3 October 2017 – Discussion started: 12 October 2017 Revised: 29 March 2018 – Accepted: 7 April 2018 – Published: 4 May 2018 Abstract. Hydrothermal vent sites along the Juan de Fuca community structuring. Vent food webs did not appear to be Ridge in the north-east Pacific host dense populations of organised through predator–prey relationships. For example, Ridgeia piscesae tubeworms that promote habitat hetero- although trophic structure complexity increased with ecolog- geneity and local diversity. A detailed description of the ical successional stages, showing a higher number of preda- biodiversity and community structure is needed to help un- tors in the last stages, the food web structure itself did not derstand the ecological processes that underlie the distribu- change across assemblages. -
Molecular Phylogeny of Echiuran Worms (Phylum: Annelida) Reveals Evolutionary Pattern of Feeding Mode and Sexual Dimorphism
Molecular Phylogeny of Echiuran Worms (Phylum: Annelida) Reveals Evolutionary Pattern of Feeding Mode and Sexual Dimorphism Ryutaro Goto1,2*, Tomoko Okamoto2, Hiroshi Ishikawa3, Yoichi Hamamura4, Makoto Kato2 1 Department of Marine Ecosystem Dynamics, Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Chiba, Japan, 2 Graduate School of Human and Environmental Studies, Kyoto University, Kyoto, Japan, 3 Uwajima, Ehime, Japan, 4 Kure, Hiroshima, Japan Abstract The Echiura, or spoon worms, are a group of marine worms, most of which live in burrows in soft sediments. This annelid- like animal group was once considered as a separate phylum because of the absence of segmentation, although recent molecular analyses have placed it within the annelids. In this study, we elucidate the interfamily relationships of echiuran worms and their evolutionary pattern of feeding mode and sexual dimorphism, by performing molecular phylogenetic analyses using four genes (18S, 28S, H3, and COI) of representatives of all extant echiuran families. Our results suggest that Echiura is monophyletic and comprises two unexpected groups: [Echiuridae+Urechidae+Thalassematidae] and [Bone- lliidae+Ikedidae]. This grouping agrees with the presence/absence of marked sexual dimorphism involving dwarf males and the paired/non-paired configuration of the gonoducts (genital sacs). Furthermore, the data supports the sister group relationship of Echiuridae and Urechidae. These two families share the character of having anal chaetae rings around the posterior trunk as a synapomorphy. The analyses also suggest that deposit feeding is a basal feeding mode in echiurans and that filter feeding originated once in the common ancestor of Urechidae. Overall, our results contradict the currently accepted order-level classification, especially in that Echiuroinea is polyphyletic, and provide novel insights into the evolution of echiuran worms. -
Annelida, Amphinomidae) in the Mediterranean Sea with an Updated Revision of the Alien Mediterranean Amphinomids
A peer-reviewed open-access journal ZooKeys 337: 19–33 (2013)On the occurrence of the firewormEurythoe complanata complex... 19 doi: 10.3897/zookeys.337.5811 RESEARCH ARTICLE www.zookeys.org Launched to accelerate biodiversity research On the occurrence of the fireworm Eurythoe complanata complex (Annelida, Amphinomidae) in the Mediterranean Sea with an updated revision of the alien Mediterranean amphinomids Andrés Arias1, Rômulo Barroso2,3, Nuria Anadón1, Paulo C. Paiva4 1 Departamento de Biología de Organismos y Sistemas (Zoología), Universidad de Oviedo, Oviedo 33071, Spain 2 Pontifícia Universidade Católica do Rio de Janeiro , Rio de Janeiro, Brazil 3 Museu de Zoologia da Unicamp, Campinas, SP, Brazil 4 Departamento de Zoologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ) , Rio de Janeiro, RJ, Brasil Corresponding author: Andrés Arias ([email protected]) Academic editor: C. Glasby | Received 17 June 2013 | Accepted 19 September 2013 | Published 30 September 2013 Citation: Arias A, Barroso R, Anadón N, Paiva PC (2013) On the occurrence of the fireworm Eurythoe complanata complex (Annelida, Amphinomidae) in the Mediterranean Sea with an updated revision of the alien Mediterranean amphinomids. ZooKeys 337: 19–33. doi: 10.3897/zookeys.337.5811 Abstract The presence of two species within the Eurythoe complanata complex in the Mediterranean Sea is reported, as well as their geographical distributions. One species, Eurythoe laevisetis, occurs in the eastern and cen- tral Mediterranean, likely constituting the first historical introduction to the Mediterranean Sea and the other, Eurythoe complanata, in both eastern and Levantine basins. Brief notes on their taxonomy are also provided and their potential pathways for introduction to the Mediterranean are discussed. -
In the Atlantic-Mediterranean Biogeographic Area
SPECIES OF SPIOCHAETOPTERUS (POLYCHAETA, CHAETOPTERIDAE) IN THE ATLANTIC-MEDITERRANEAN BIOGEOGRAPHIC AREA MICHEL R. BHAUD BHAUD, MICHEL R. 1998 08 28. Species of Spiochaetopterus (Polychaeta, Chaetopteridae) in the Atlantic- SARSIA Mediterranean biogeographic area. – Sarsia 83:243-263. Bergen. ISSN 0036-4827. Five species of the genus Spiochaetopterus: S. typicus SARS, S. bergensis GITAY, S. costarum (CLAPARÈDE), S. oculatus WEBSTER, and S. solitarius (RIOJA) have been compared. These species can be divided into two groups: group A, with boreal biogeographic affinity, consisting of S. typicus and S. bergensis; group B, with temperate biogeographic affinity, consisting of S. costarum, S. solitarius and S. oculatus. The two groups differ in the shape of the specialized setae of segment A4, the number of segments in region B, and the structure of the tube. Representatives of group A have a middle region of two seg- ments, modified setae of segment A4 are distally rhomboid and the tubes are without articulations. Representatives of group B have a middle region of many, always more than 2 segments; modified setae of A4 are distally cordate, and the tubes are with articulations. In each geographic unit of the Atlantic-Mediterranean area, the species are divided into two groups of different sizes. The usefulness of such systematic characters as the number of segments in region B, ornamentation of the tubes and relative size of the pro- and peristomium is reexamined. New characters include the detailed morphol- ogy of the A4 setae, location of the secretory part of the ventral shield, and the structure of the secretory pores. Two diagnostic keys to species, one based on the tubes and the other on the A4 setae, are included. -
Eunicida and Amphinomida Polychaetes (Annelida) Inhabiting Dead Coral Fragments in the Chinchorro Bank Biosphere Reserve, Mexican Caribbean
Eunicida and Amphinomida polychaetes (Annelida) inhabiting dead coral fragments in the Chinchorro Bank Biosphere Reserve, Mexican Caribbean Pablo Hernández-Alcántara1, Ismael Narciso Cruz-Pérez2 & Vivianne Solís-Weiss3 1. Unidad Académica de Ecología y Biodiversidad Acuática, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México. Circuito Exterior S/N, Cd. Universitaria, Ciudad de México, 04510, México, [email protected] 2. Facultad de Estudios Superiores Zaragoza, Universidad Nacional Autónoma de México. Batalla 5 de mayo S/N esquina Fuerte de Loreto, Colonia Ejército de Oriente, C.P. 09230, Ciudad de México, México, [email protected] 3. Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México. Prol. Av. Niños Héroes s/n Puerto Morelos Quintana Roo, 77580, México, [email protected] Received 08-VII-2018. Corrected 20-V-2019. Accepted 30-VI-2019. ABSTRACT. Introduction: The polychaete fauna inhabiting Chinchorro Bank has been poorly studied and only 35 species have been previously reported. Objective: To examine the taxonomic composition of the Eunicida and Amphinomida associated to dead coral substrates from this coral reef atoll, a Biosphere Reserve located in the southern Mexican Caribbean. Methods: In April 2008, dead coral fragments of the genus Porites were manually collected by SCUBA diving at eight stations between 4-16.2 m depth. Results: A total of 714 individuals belonging to 17 genera and 48 species of the families Amphinomidae, Dorvilleidae, Eunicidae, Lumbrineridae, Oenonidae and Onuphidae were identified. Eunicidae was clearly the more diverse (29 species; 60.4 %) and abundant family (479 individuals; 67.1 %), while the Oenonidae and Onuphidae were represented by only one individual-species each. -
Thelepus Crispus Class: Polychaeta, Sedentaria, Canalipalpata
Phylum: Annelida Thelepus crispus Class: Polychaeta, Sedentaria, Canalipalpata Order: Terebellida, Terebellomorpha A terebellid worm Family: Terebellidae, Theleponinae Description (Hartman 1969). Notosetae present from Size: Individuals range in size from 70–280 second branchial segment (third body mm in length (Hartman 1969). The greatest segment) and continue almost to the worm body width at segments 10–16 is 13 mm (88 posterior (to 14th segment from end in mature –147 segments). The dissected individual specimens) (Hutchings and Glasby 1986). All on which this description is based was 120 neurosetae short handled, avicular (bird-like) mm in length (from Coos Bay, Fig. 1). uncini, imbedded in a single row on oval- Color: Pinkish orange and cream with bright shaped tori (Figs. 3, 5) where the single row red branchiae, dark pink prostomium and curves into a hook, then a ring in latter gray tentacles and peristomium. segments (Fig. 3). Each uncinus bears a General Morphology: Worm rather stout thick, short fang surmounted by 4–5 small and cigar-shaped. teeth (Hartman 1969) (two in this specimen) Body: Two distinct body regions consisting (Fig. 4). Uncini begin on the fifth body of a broad thorax with neuro- and notopodia segment (third setiger), however, Johnson and a tapering abdomen with only neuropo- (1901) and Hartman (1969) have uncini dia. beginning on setiger two. Anterior: Prostomium reduced, with Eyes/Eyespots: None. ample dorsal flap transversely corrugated Anterior Appendages: Feeding tentacles are dorsally (Fig. 5). Peristomium with circlet of long (Fig. 1), filamentous, white and mucus strongly grooved, unbranched tentacles (Fig. covered. 5), which cannot be retracted fully (as in Am- Branchiae: Branchiae present (subfamily pharctidae). -
Convergent Evolution of the Ladder-Like Ventral Nerve Cord in Annelida Conrad Helm1*, Patrick Beckers2, Thomas Bartolomaeus2, Stephan H
Helm et al. Frontiers in Zoology (2018) 15:36 https://doi.org/10.1186/s12983-018-0280-y RESEARCH Open Access Convergent evolution of the ladder-like ventral nerve cord in Annelida Conrad Helm1*, Patrick Beckers2, Thomas Bartolomaeus2, Stephan H. Drukewitz3, Ioannis Kourtesis1, Anne Weigert4, Günter Purschke5, Katrine Worsaae6, Torsten H. Struck7 and Christoph Bleidorn1,8* Abstract Background: A median, segmented, annelid nerve cord has repeatedly been compared to the arthropod and vertebrate nerve cords and became the most used textbook representation of the annelid nervous system. Recent phylogenomic analyses, however, challenge the hypothesis that a subepidermal rope-ladder-like ventral nerve cord (VNC) composed of a paired serial chain of ganglia and somata-free connectives represents either a plesiomorphic or a typical condition in annelids. Results: Using a comparative approach by combining phylogenomic analyses with morphological methods (immunohistochemistry and CLSM, histology and TEM), we compiled a comprehensive dataset to reconstruct the evolution of the annelid VNC. Our phylogenomic analyses generally support previous topologies. However, the so far hard-to-place Apistobranchidae and Psammodrilidae are now incorporated among the basally branching annelids with high support. Based on this topology we reconstruct an intraepidermal VNC as the ancestral state in Annelida. Thus, a subepidermal ladder-like nerve cord clearly represents a derived condition. Conclusions: Based on the presented data, a ladder-like appearance of the ventral nerve cord evolved repeatedly, and independently of the transition from an intraepidermal to a subepidermal cord during annelid evolution. Our investigations thereby propose an alternative set of neuroanatomical characteristics for the last common ancestor of Annelida or perhaps even Spiralia. -
Spatial Variation in the Reproductive Biology of Paralvinella Palmiformis (Polychaeta: Alvinellidae) from a Vent Field on the Juan De Fuca Ridge
MARINE ECOLOGY PROGRESS SERIES Vol. 255: 171–181, 2003 Published June 24 Mar Ecol Prog Ser Spatial variation in the reproductive biology of Paralvinella palmiformis (Polychaeta: Alvinellidae) from a vent field on the Juan de Fuca Ridge Jonathan T. P. Copley1,*, Paul A. Tyler 1, Cindy L. Van Dover 2, Steven J. Philp1 1School of Ocean and Earth Science, Southampton Oceanography Centre, University of Southampton, European Way, Southampton SO14 3ZH, United Kingdom 2Biology Department, College of William & Mary, Williamsburg, Virginia 23187, USA ABSTRACT: The microdistribution and dynamics of deep-sea hydrothermal vent communities often reflect the extreme heterogeneity of their environment. Here we present an assessment of spatial variation in the reproductive development of the alvinellid polychaete Paralvinella palmiformis at the High Rise vent field (Endeavour Segment, Juan de Fuca Ridge, NE Pacific). Samples collected from different locations across the vent field suggest patchy reproductive development for this species. Males and females from several locations contained few or no developing gametes, while gametes were abundant in samples collected at the same time from other locations. Samples lacking gametes were distinguished by body size-frequency distributions with peaks at smaller sizes and the presence or absence of other fauna consistent with early stage assemblages in a successional mosaic model previously proposed for Endeavour Segment communities. Where gametes were present, synchrony of reproductive development between females within samples and between samples was evident. Reproductive synchrony between pairs of samples initially declined over a 7 d interval between sam- ples, suggesting a rapid rate of reproductive development for P. palmiformis. Samples collected 1 mo apart, however, displayed similar frequency distributions of developing gametes.