bioRxiv preprint doi: https://doi.org/10.1101/2020.04.23.056978; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. PlanktonScope: Affordable modular imaging platform for citizen oceanography §1 §1 2,4 1 2,3 Thibaut Pollina , Adam G. Larson , Fabien Lombard , Hongquan Li , Sebastien Colin , 2,3,5 1,2 Colomban de Vargas , and Manu Prakash* 1. Stanford University, Bioengineering, Stanford, CA, United States 2. Plankton Planet NGO, Station Biologique de Roscoff, France 3. Station Biologique de Roscoff, Sorbonne Université & CNRS, Roscoff, France 4. LSCE/IPSL, laboratoire CEA/CNRS/UVSQ, LSCE-Vall ́ee, Bat. 12, avenue de la Terrasse, 91198 Gif-sur-Yvette CEDEX, France 5. Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara GOSEE, Paris, France § Co-first authors *Corresponding author:
[email protected] Abstract The planktonic communities within our oceans represent one of the most diverse and understudied ecosystems on the planet. A major hurdle in describing these systems is the sheer scale of the oceans along with logistical and economic constraints associated with their sampling. This is due to the limited amount of scientifically equipped fleets and affordable equipment. Here we demonstrate a modular approach for building a versatile, re-configurable imaging platform that can be adapted to a number of field applications, specifically focusing on oceanography. By using a modular hardware/software approach for building microscopes, we demonstrate high-throughput imaging of lab and field samples while enabling rapid device reconfiguration in order to match diverse applications and the evolving needs of the sampler.