Nematoda : Longidoridae
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Phylogeography of the Soil-Borne Vector Nematode
Phylogeography of the soil-borne vector nematode Xiphinema index highly suggests Eastern origin and dissemination with domesticated grapevine van Chung Nguyen, Laure Villate, Carlos Gutierrez-Gutierrez, Pablo Castillo, Cyril van Ghelder, Olivier Plantard, Daniel Esmenjaud To cite this version: van Chung Nguyen, Laure Villate, Carlos Gutierrez-Gutierrez, Pablo Castillo, Cyril van Ghelder, et al.. Phylogeography of the soil-borne vector nematode Xiphinema index highly suggests Eastern origin and dissemination with domesticated grapevine. Scientific Reports, Nature Publishing Group, 2019, 9 (1), pp.1-11. 10.1038/s41598-019-43812-4. hal-02629151 HAL Id: hal-02629151 https://hal.inrae.fr/hal-02629151 Submitted on 27 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License www.nature.com/scientificreports OPEN Phylogeography of the soil-borne vector nematode Xiphinema index highly suggests Eastern origin and Received: 27 June 2018 Accepted: 27 April 2019 dissemination with domesticated Published: xx xx xxxx grapevine Van Chung Nguyen1,6, Laure Villate2, Carlos Gutierrez-Gutierrez 3, Pablo Castillo 4, Cyril Van Ghelder1, Olivier Plantard5 & Daniel Esmenjaud1 The soil-borne nematode Xiphinema index is closely linked to its main host, the grapevine, and presents a major threat to vineyards worldwide due to its ability to transmit Grapevine fanleaf virus (GFLV). -
Vector Capability of Xiphinema Americanum Sensu Lato in California 1
Journal of Nematology 21(4):517-523. 1989. © The Society of Nematologists 1989. Vector Capability of Xiphinema americanum sensu lato in California 1 JOHN A. GRIESBACH 2 AND ARMAND R. MAGGENTI s Abstract: Seven field populations of Xiphineraa americanum sensu lato from California's major agronomic areas were tested for their ability to transmit two nepoviruses, including the prune brownline, peach yellow bud, and grapevine yellow vein strains of" tomato ringspot virus and the bud blight strain of tobacco ringspot virus. Two field populations transmitted all isolates, one population transmitted all tomato ringspot virus isolates but failed to transmit bud blight strain of tobacco ringspot virus, and the remaining four populations failed to transmit any virus. Only one population, which transmitted all isolates, bad been associated with field spread of a nepovirus. As two California populations of Xiphinema americanum sensu lato were shown to have the ability to vector two different nepoviruses, a nematode taxonomy based on a parsimony of virus-vector re- lationship is not practical for these populations. Because two California populations ofX. americanum were able to vector tobacco ringspot virus, commonly vectored by X. americanum in the eastern United States, these western populations cannot be differentiated from eastern populations by vector capability tests using tobacco ringspot virus. Key words: dagger nematode, tobacco ringspot virus, tomato ringspot virus, nepovirus, Xiphinema americanum, Xiphinema californicum. Populations of Xiphinema americanum brownline (PBL), prunus stem pitting (PSP) Cobb, 1913 shown through rigorous test- and cherry leaf mottle (CLM) (8). Both PBL ing (23) to be nepovirus vectors include X. and PSP were transmitted with a high de- americanum sensu lato (s.1.) for tobacco gree of efficiency, whereas CLM was trans- ringspot virus (TobRSV) (5), tomato ring- mitted rarely. -
Comprehensive Transcriptome Profiling of Root-Knot Nematodes During Plant Infection and Characterisation of Species Specific Trait Chinh Nghia Nguyen
Comprehensive transcriptome profiling of root-knot nematodes during plant infection and characterisation of species specific trait Chinh Nghia Nguyen To cite this version: Chinh Nghia Nguyen. Comprehensive transcriptome profiling of root-knot nematodes during plant infection and characterisation of species specific trait. Agricultural sciences. COMUE Université Côte d’Azur (2015 - 2019), 2016. English. NNT : 2016AZUR4124. tel-01673793 HAL Id: tel-01673793 https://tel.archives-ouvertes.fr/tel-01673793 Submitted on 1 Jan 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Ecole Doctorale de Sciences de la Vie et de la Santé Unité de recherche : UMR ISA INRA 1355-UNS-CNRS 7254 Thèse de doctorat Présentée en vue de l’obtention du grade de docteur en Biologie Moléculaire et Cellulaire de L’UNIVERSITE COTE D’AZUR par NGUYEN Chinh Nghia Etude de la régulation du transcriptome de nématodes parasites de plante, les nématodes à galles du genre Meloidogyne Dirigée par Dr. Bruno FAVERY Soutenance le 8 Décembre, 2016 Devant le jury composé de : Pr. Pierre FRENDO Professeur, INRA UNS CNRS Sophia-Antipolis Président Dr. Marc-Henri LEBRUN Directeur de Recherche, INRA AgroParis Tech Grignon Rapporteur Dr. -
Studies on Nematodes Parasitic on Woody Plants2. Genus Xiphinema
第12巻 日本線虫研究会誌 1983年3月 Studies on Nematodes Parasitic on Woody Plants 2. Genus Xiphinema CoBB, 1913* Yukio SHISHIDA** Five species in the genus Xiphinema, which were found in the Meiji Shrine Forest in Tokyo and at another site, are discussed and figured. They were associeted with various woody plant species. X. incognitum LAMBERTI et BLEVE-ZACHEO,which was originally described from specimens in England obtained from bonsai trees imported from Japan, appears to be native to Japan. Juveniles of X. chambersi THORNE, known so far only from North America, are described and the number of developmental stages of this species was discussed. Additional information on the morphological variability of X. simillimum LooF et YASSIN, known so far only from Africa, X. bakeri WILLIAMS and X. insigne Loos is presented. The intraspecific variation and geographic distribution of these species are discussed. Jpn. J. Nematol. 12: 1-14 (1983) Among the plant parasitic nematodes found in forests or forest nurseries, Xiphinema species are rather common and frequently encountered20,30,40,58> In his review of relations between Xiphinema and Longidorus and their host plants, CoHN5 noticed that most Xiphinema species have a preference for woody plants. The present paper reports five Xiphinema species associated with woody plants in Meiji Shrine Forest, Tokyo38) and in another site in central Japan. XIPHINEMA INCOGNITUM LAMBERTI et BLEVE-ZACHEO,1979 (Fig. 1. A-L) Syn. Tylencholaimus americanus in IMAMURA, 1931; KABURAKI& IMAMURA,1933 Xiphinema americanum in MAMIYA, 1969; SOUTHEY, 1973; TOIDA, OHSHIMA & HIRATA, 1978 This species had been treated as X. americanum, a widely distributed species with a great morphological variability. -
Morphology and Taxonomy of Xiphinema ( Nematoda: Longidoridae) Occurring in Arkansas,USA
江西农业大学学报 2010,32( 5): 0928 - 0945 http: / /xuebao. jxau. edu. cn Acta AGriculturae Universitatis JianGxiensis E - mail: ndxb7775@ sina. com Morphology and Taxonomy of Xiphinema ( Nematoda: Longidoridae) Occurring in Arkansas,USA YE Weimin 1,2 ,ROBBINS R. T. 1 ( 1. Department of Plant PatholoGy,NematoloGy Laboratory,2601 N. YounG Ave. ,University of Arkan- sas,Fayetteville,AR 72704,USA. 2. Present address: Nematode Assay Laboratory,North Carolina Depart- ment of AGriculture and Consumer Services,RaleiGh,NC 27607,USA) Abstract: In a survey,primarily from the rhizosphere of hardwood trees GrowinG on sandy stream banks, for lonGidorids,828 soil samples were collected from 37 Arkansas counties in 1999—2001. One hundred twenty-seven populations of Xiphinema were recovered from 452 of the 828 soil samples ( 54. 6% ),includinG 71 populations of X. americanum sensu lato,33 populations of X. bakeri,23 populations of X. chambersi and one population of X. krugi. The morpholoGical and morphometric characteristics of these Arkansas species are presented. MorpholoGical and morphometric characteristics are also Given for two populations of X. krugi from Hawaii and North Carolina. Key words: Arkansas; morpholoGy; SEM; survey; taxonomy; Xiphinema americanum; X. bakeri; X. chambersi; X. krugi. 中图分类号: Q959. 17; S432. 4 + 5 文献标志码: A 文章编号: 1000 - 2286( 2010) 05 - 0928 - 18 Xiphinema species are miGratory ectoparasites of both herbaceous and woody plants. Direct feedinG dam- aGe may result in root-tip GallinG and stuntinG of top Growth. In addition,some species -
Worms, Nematoda
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Faculty Publications from the Harold W. Manter Laboratory of Parasitology Parasitology, Harold W. Manter Laboratory of 2001 Worms, Nematoda Scott Lyell Gardner University of Nebraska - Lincoln, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/parasitologyfacpubs Part of the Parasitology Commons Gardner, Scott Lyell, "Worms, Nematoda" (2001). Faculty Publications from the Harold W. Manter Laboratory of Parasitology. 78. https://digitalcommons.unl.edu/parasitologyfacpubs/78 This Article is brought to you for free and open access by the Parasitology, Harold W. Manter Laboratory of at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Faculty Publications from the Harold W. Manter Laboratory of Parasitology by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Published in Encyclopedia of Biodiversity, Volume 5 (2001): 843-862. Copyright 2001, Academic Press. Used by permission. Worms, Nematoda Scott L. Gardner University of Nebraska, Lincoln I. What Is a Nematode? Diversity in Morphology pods (see epidermis), and various other inverte- II. The Ubiquitous Nature of Nematodes brates. III. Diversity of Habitats and Distribution stichosome A longitudinal series of cells (sticho- IV. How Do Nematodes Affect the Biosphere? cytes) that form the anterior esophageal glands Tri- V. How Many Species of Nemata? churis. VI. Molecular Diversity in the Nemata VII. Relationships to Other Animal Groups stoma The buccal cavity, just posterior to the oval VIII. Future Knowledge of Nematodes opening or mouth; usually includes the anterior end of the esophagus (pharynx). GLOSSARY pseudocoelom A body cavity not lined with a me- anhydrobiosis A state of dormancy in various in- sodermal epithelium. -
Morphological and Molecular Characterization of Longidorus Americanum N
Journal of Nematology 37(1):94–104. 2005. ©The Society of Nematologists 2005. Morphological and Molecular Characterization of Longidorus americanum n. sp. (Nematoda: Longidoridae), aNeedle Nematode Parasitizing Pine in Georgia Z. A. H andoo, 1 L. K. C arta, 1 A. M. S kantar, 1 W. Y e , 2 R. T. R obbins, 2 S. A. S ubbotin, 3 S. W. F raedrich, 4 and M. M. C ram4 Abstract: We describe and illustrate anew needle nematode, Longidorus americanum n. sp., associated with patches of severely stunted and chlorotic loblolly pine, ( Pinus taeda L.) seedlings in seedbeds at the Flint River Nursery (Byromville, GA). It is characterized by having females with abody length of 5.4–9.0 mm; lip region slightly swollen, anteriorly flattened, giving the anterior end atruncate appearance; long odontostyle (124–165 µm); vulva at 44%–52% of body length; and tail conoid, bluntly rounded to almost hemispherical. Males are rare but present, and in general shorter than females. The new species is morphologically similar to L. biformis, L. paravineacola, L. saginus, and L. tarjani but differs from these species either by the body, odontostyle and total stylet length, or by head and tail shape. Sequence data from the D2–D3 region of the 28S rDNA distinguishes this new species from other Longidorus species. Phylogenetic relationships of Longidorus americanum n. sp. with other longidorids based on analysis of this DNA fragment are presented. Additional information regarding the distribution of this species within the region is required. Key words: DNA sequencing, Georgia, loblolly pine, Longidorus americanum n. sp., molecular data, morphology, new species, needle nematode, phylogenetics, SEM, taxonomy. -
Theory Manual Course No. Pl. Path
NAVSARI AGRICULTURAL UNIVERSITY Theory Manual INTRODUCTORY PLANT NEMATOLOGY Course No. Pl. Path 2.2 (V Dean’s) nd 2 Semester B.Sc. (Hons.) Agri. PROF.R.R.PATEL, ASSISTANT PROFESSOR Dr.D.M.PATHAK, ASSOCIATE PROFESSOR Dr.R.R.WAGHUNDE, ASSISTANT PROFESSOR DEPARTMENT OF PLANT PATHOLOGY COLLEGE OF AGRICULTURE NAVSARI AGRICULTURAL UNIVERSITY BHARUCH 392012 1 GENERAL INTRODUCTION What are the nematodes? Nematodes are belongs to animal kingdom, they are triploblastic, unsegmented, bilateral symmetrical, pseudocoelomateandhaving well developed reproductive, nervous, excretoryand digestive system where as the circulatory and respiratory systems are absent but govern by the pseudocoelomic fluid. Plant Nematology: Nematology is a science deals with the study of morphology, taxonomy, classification, biology, symptomatology and management of {plant pathogenic} nematode (PPN). The word nematode is made up of two Greek words, Nema means thread like and eidos means form. The words Nematodes is derived from Greek words ‘Nema+oides’ meaning „Thread + form‟(thread like organism ) therefore, they also called threadworms. They are also known as roundworms because nematode body tubular is shape. The movement (serpentine) of nematodes like eel (marine fish), so also called them eelworm in U.K. and Nema in U.S.A. Roundworms by Zoologist Nematodes are a diverse group of organisms, which are found in many different environments. Approximately 50% of known nematode species are marine, 25% are free-living species found in soil or freshwater, 15% are parasites of animals, and 10% of known nematode species are parasites of plants (see figure at left). The study of nematodes has traditionally been viewed as three separate disciplines: (1) Helminthology dealing with the study of nematodes and other worms parasitic in vertebrates (mainly those of importance to human and veterinary medicine). -
STUDIES on XIPHINEMA AMERICANUM SENSU LATD with DESCRIPTIONS of FIFTEEN NEW SPECIES (NEMATODA, LONGIDORIDAE) by Lima
~emat~mfli't (1979), 7 51-106. Laboratorio di Nematologia Agraria del C.N.R. - 70126 Bari, Italy STUDIES ON XIPHINEMA AMERICANUM SENSU LATD WITH DESCRIPTIONS OF FIFTEEN NEW SPECIES (NEMATODA, LONGIDORIDAE) By FRANCO LAMBERTI AND TERESA BLEVE-ZACHEO Lima (1965) was the first to hypothesize that Xiphinema ameri canum Cobb, 1913 was a complex of different species in which he listed X. americanum, X. brevicolle Lordello et Da Costa, 1961, X. opisthohysterum Siddiqi, 1961 and four undescribed species (Lima, 1968). One of them was later described as X. mediterraneum Martelli et Lamberti, 1967 (Lamberti and Martelli, 1971) and recently synon ymized with X. pachtaicum (Tulaganov, 1938) Kirijanova, 1951 (Sid diqi and Lamberti, 1977). The morphometrical variability in X. ame ricanum was also studied by Tarjan (1968) who, after having examined 75 world-wide collected populations, concluded that the species status of X. brevicolle, X. opisthohysterum and Lima's Mediterranean species, presently X. pachtaicum, was justified but that all the other variations he had observed should be considered as geographical variants, cor related with climatic influences, within the X. americanum complex (Tarjan, 1969). In 1974 Heyns stated that «demarcation of species within the group is problematical and unsatisfactory although several of the species proposed by Lima seem to be justified ». Because of the importance of X. americanum as a vector of some plant viruses (Taylor and Robertson, 1975) we thought it useful to carry out studies which would clarify the identity of several popu lations from different geographical locations and establish the re lationships with this and the other related species. -
Molecular and Morphological Characterisation of Species
Nematology, 2011, Vol. 13(3), 295-306 Molecular and morphological characterisation of species within the Xiphinema americanum-group (Dorylaimida: Longidoridae) from the central valley of Chile ∗ Pablo MEZA 1,2, ,ErwinABALLAY 1 and Patricio HINRICHSEN 2 1 Faculty of Agronomy, Universidad de Chile, Avenida Santa Rosa 11315, Santiago, Chile 2 Biotechnology Laboratory, INIA La Platina, Avenida Santa Rosa 11610, Santiago, Chile Received: 7 January 2010; revised: 21 June 2010 Accepted for publication: 21 June 2010 Summary – Species of the Xiphinema americanum-group are among the most damaging nematodes for a diverse range of crops. This group includes 51 nominal species throughout the world. They are very difficult to identify by traditional taxonomic methods. Despite its importance in agriculture, the species composition of this group in many countries, including Chile, remains unknown. In order to identify the species in the central valley of Chile, we studied the morphological, morphometric and molecular diversity of 13 populations. Through classical taxonomic methods two species, X. inaequale and X. peruvianum, were identified with clear differences in the shape of the lip region. The DNA sequences of the ITS of ribosomal genes revealed divergences in the nucleotide sequences of the two species from 7.3% in ITS1 to 14.7% in ITS2. These results confirmed the presence of two distinct species, namely X. peruvianum and X. inaequale, in the northern and southern parts of the central valley of Chile, respectively. PCR-RFLP was developed for rapid species identification of these two species. Keywords – molecular, morphology, morphometrics, taxonomy, Xiphinema californicum, Xiphinema inaequale, Xiphinema peruvia- num. The Xiphinema americanum-group comprises 51 nom- nologies has opened a new spectrum of possibilities in ne- inal species found all over the world (Lamberti et al., matode taxonomy. -
Transcriptome Profiling of the Root-Knot Nematode Meloidogyne Enterolobii During Parasitism and Identification of Novel Effector Proteins
Ecole Doctorale de Sciences de la Vie et de la Santé Unité de recherche : UMR ISA INRA 1355-UNS-CNRS 7254 Thèse de doctorat Présentée en vue de l’obtention du grade de docteur en Biologie Moléculaire et Cellulaire de L’UNIVERSITE COTE D’AZUR par NGUYEN Chinh Nghia Etude de la régulation du transcriptome de nématodes parasites de plante, les nématodes à galles du genre Meloidogyne Dirigée par Dr. Bruno FAVERY Soutenance le 8 Décembre, 2016 Devant le jury composé de : Pr. Pierre FRENDO Professeur, INRA UNS CNRS Sophia-Antipolis Président Dr. Marc-Henri LEBRUN Directeur de Recherche, INRA AgroParis Tech Grignon Rapporteur Dr. Nemo PEETERS Directeur de Recherche, CNRS-INRA Castanet Tolosan Rapporteur Dr. Stéphane JOUANNIC Chargé de Recherche, IRD Montpellier Examinateur Dr. Bruno FAVERY Directeur de Recherche, UNS CNRS Sophia-Antipolis Directeur de thèse Doctoral School of Life and Health Sciences Research Unity: UMR ISA INRA 1355-UNS-CNRS 7254 PhD thesis Presented and defensed to obtain Doctor degree in Molecular and Cellular Biology from COTE D’AZUR UNIVERITY by NGUYEN Chinh Nghia Comprehensive Transcriptome Profiling of Root-knot Nematodes during Plant Infection and Characterisation of Species Specific Trait PhD directed by Dr Bruno FAVERY Defense on December 8th 2016 Jury composition : Pr. Pierre FRENDO Professeur, INRA UNS CNRS Sophia-Antipolis President Dr. Marc-Henri LEBRUN Directeur de Recherche, INRA AgroParis Tech Grignon Reporter Dr. Nemo PEETERS Directeur de Recherche, CNRS-INRA Castanet Tolosan Reporter Dr. Stéphane JOUANNIC Chargé de Recherche, IRD Montpellier Examinator Dr. Bruno FAVERY Directeur de Recherche, UNS CNRS Sophia-Antipolis PhD Director Résumé Les nématodes à galles du genre Meloidogyne spp. -
Detection of Multiple Variants of Grapevine
Detection of Multiple Variants of Grapevine Fanleaf Virus in Single Xiphinema index Nematodes Shahinez Garcia, Jean-Michel Hily, Veronique Komar, Claude Gertz, Gerard Demangeat, Olivier Lemaire, Emmanuelle Vigne To cite this version: Shahinez Garcia, Jean-Michel Hily, Veronique Komar, Claude Gertz, Gerard Demangeat, et al.. Detec- tion of Multiple Variants of Grapevine Fanleaf Virus in Single Xiphinema index Nematodes. Viruses, MDPI, 2019, 11 (12), pp.1139. 10.3390/v11121139. hal-03017540 HAL Id: hal-03017540 https://hal.archives-ouvertes.fr/hal-03017540 Submitted on 20 Nov 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. viruses Article Detection of Multiple Variants of Grapevine Fanleaf Virus in Single Xiphinema index Nematodes 1, 1,2, 1 1 Shahinez Garcia y, Jean-Michel Hily y ,Véronique Komar , Claude Gertz , Gérard Demangeat 1, Olivier Lemaire 1 and Emmanuelle Vigne 1,* 1 Unité Mixte de Recherche (UMR) Santé de la Vigne et Qualité du Vin, Institut National de la Recherche Agronomique (INRA)-Université de Strasbourg, BP 20507, 68021 Colmar Cedex, France; [email protected] (S.G.); [email protected] (J.-M.H.); [email protected] (V.K.); [email protected] (C.G.); [email protected] (G.D.); [email protected] (O.L.) 2 Institut Français de la Vigne et du Vin (IFV), 30240 Le Grau-Du-Roi, France * Correspondence: [email protected]; Tel.: +33-389-224-955 These authors contributed equally to the work.