Vector Capability of Xiphinema Americanum Sensu Lato in California 1
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Comprehensive Transcriptome Profiling of Root-Knot Nematodes During Plant Infection and Characterisation of Species Specific Trait Chinh Nghia Nguyen
Comprehensive transcriptome profiling of root-knot nematodes during plant infection and characterisation of species specific trait Chinh Nghia Nguyen To cite this version: Chinh Nghia Nguyen. Comprehensive transcriptome profiling of root-knot nematodes during plant infection and characterisation of species specific trait. Agricultural sciences. COMUE Université Côte d’Azur (2015 - 2019), 2016. English. NNT : 2016AZUR4124. tel-01673793 HAL Id: tel-01673793 https://tel.archives-ouvertes.fr/tel-01673793 Submitted on 1 Jan 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Ecole Doctorale de Sciences de la Vie et de la Santé Unité de recherche : UMR ISA INRA 1355-UNS-CNRS 7254 Thèse de doctorat Présentée en vue de l’obtention du grade de docteur en Biologie Moléculaire et Cellulaire de L’UNIVERSITE COTE D’AZUR par NGUYEN Chinh Nghia Etude de la régulation du transcriptome de nématodes parasites de plante, les nématodes à galles du genre Meloidogyne Dirigée par Dr. Bruno FAVERY Soutenance le 8 Décembre, 2016 Devant le jury composé de : Pr. Pierre FRENDO Professeur, INRA UNS CNRS Sophia-Antipolis Président Dr. Marc-Henri LEBRUN Directeur de Recherche, INRA AgroParis Tech Grignon Rapporteur Dr. -
Response of Blackberry Cultivars to Nematode Transmission of Tobacco Ringspot Virus Alisha Sanny University of Arkansas, Fayetteville
Inquiry: The University of Arkansas Undergraduate Research Journal Volume 4 Article 18 Fall 2003 Response of Blackberry Cultivars to Nematode Transmission of Tobacco Ringspot Virus Alisha Sanny University of Arkansas, Fayetteville Follow this and additional works at: http://scholarworks.uark.edu/inquiry Part of the Agronomy and Crop Sciences Commons, Horticulture Commons, and the Plant Pathology Commons Recommended Citation Sanny, Alisha (2003) "Response of Blackberry Cultivars to Nematode Transmission of Tobacco Ringspot Virus," Inquiry: The University of Arkansas Undergraduate Research Journal: Vol. 4 , Article 18. Available at: http://scholarworks.uark.edu/inquiry/vol4/iss1/18 This Article is brought to you for free and open access by ScholarWorks@UARK. It has been accepted for inclusion in Inquiry: The nivU ersity of Arkansas Undergraduate Research Journal by an authorized editor of ScholarWorks@UARK. For more information, please contact [email protected], [email protected]. '' I.'' Sanny: Response of Blackberry Cultivars to Nematode Transmission of Toba 106 INQUIRY Volume 4 2003 RESPONSE OF BLACKBERRY CULTIVARS TO NEMATODE TRANSMISSION OF TOBACCO RINGSPOT VIRUS \ ! By Alisha Sanny i Department of Horticulture :' Faculty Mentors: Professors John R.Clark and Rose Gergerich Departments of Horticulture and Plant Pathology, respectively Abstract: length in a two-year period, but that there was a significant yield reduction (50%) in RBDV infected plants, along with reduced A study was conducted on eight cultivars of blackberry berry weight (40%) and drupelet number per berry (39%) (Strik ('Apache', 'Arapaho', 'Chester', 'Chickasaw', 'Kiowa', and Martin, 2002). Infected plants also showed visual symptoms, 'Navaho', 'Shawnee', and 'Triple Crown'), ofwhichfourplants including chlorosis, vein clearing, silver discoloration, and of each were previously detennined in the fall of200I to have malformed, small fruit. -
Journal of Virological Methods 153 (2008) 16–21
Journal of Virological Methods 153 (2008) 16–21 Contents lists available at ScienceDirect Journal of Virological Methods journal homepage: www.elsevier.com/locate/jviromet Use of primers with 5 non-complementary sequences in RT-PCR for the detection of nepovirus subgroups A and B Ting Wei, Gerard Clover ∗ Plant Health and Environment Laboratory, Investigation and Diagnostic Centre, MAF Biosecurity New Zealand, P.O. Box 2095, Auckland 1140, New Zealand abstract Article history: Two generic PCR protocols were developed to detect nepoviruses in subgroups A and B using degenerate Received 21 April 2008 primers designed to amplify part of the RNA-dependent RNA polymerase (RdRp) gene. It was observed that Received in revised form 17 June 2008 detection sensitivity and specificity could be improved by adding a 12-bp non-complementary sequence Accepted 19 June 2008 to the 5 termini of the forward, but not the reverse, primers. The optimized PCR protocols amplified a specific product (∼340 bp and ∼250 bp with subgroups A and B, respectively) from all 17 isolates of the 5 Keywords: virus species in subgroup A and 3 species in subgroup B tested. The primers detect conserved protein motifs Nepoviruses in the RdRp gene and it is anticipated that they have the potential to detect unreported or uncharacterised Primer flap Universal primers nepoviruses in subgroups A and B. RT-PCR © 2008 Elsevier B.V. All rights reserved. 1. Introduction together with nematode transmission make these viruses partic- ularly hard to eradicate or control (Harrison and Murant, 1977; The genus Nepovirus is classified in the family Comoviridae, Fauquet et al., 2005). -
Morphology and Taxonomy of Xiphinema ( Nematoda: Longidoridae) Occurring in Arkansas,USA
江西农业大学学报 2010,32( 5): 0928 - 0945 http: / /xuebao. jxau. edu. cn Acta AGriculturae Universitatis JianGxiensis E - mail: ndxb7775@ sina. com Morphology and Taxonomy of Xiphinema ( Nematoda: Longidoridae) Occurring in Arkansas,USA YE Weimin 1,2 ,ROBBINS R. T. 1 ( 1. Department of Plant PatholoGy,NematoloGy Laboratory,2601 N. YounG Ave. ,University of Arkan- sas,Fayetteville,AR 72704,USA. 2. Present address: Nematode Assay Laboratory,North Carolina Depart- ment of AGriculture and Consumer Services,RaleiGh,NC 27607,USA) Abstract: In a survey,primarily from the rhizosphere of hardwood trees GrowinG on sandy stream banks, for lonGidorids,828 soil samples were collected from 37 Arkansas counties in 1999—2001. One hundred twenty-seven populations of Xiphinema were recovered from 452 of the 828 soil samples ( 54. 6% ),includinG 71 populations of X. americanum sensu lato,33 populations of X. bakeri,23 populations of X. chambersi and one population of X. krugi. The morpholoGical and morphometric characteristics of these Arkansas species are presented. MorpholoGical and morphometric characteristics are also Given for two populations of X. krugi from Hawaii and North Carolina. Key words: Arkansas; morpholoGy; SEM; survey; taxonomy; Xiphinema americanum; X. bakeri; X. chambersi; X. krugi. 中图分类号: Q959. 17; S432. 4 + 5 文献标志码: A 文章编号: 1000 - 2286( 2010) 05 - 0928 - 18 Xiphinema species are miGratory ectoparasites of both herbaceous and woody plants. Direct feedinG dam- aGe may result in root-tip GallinG and stuntinG of top Growth. In addition,some species -
Bacillus Firmus for the Biological Control of Meloidogyne Hapla and Xiphinema Americanum
Graduate Theses, Dissertations, and Problem Reports 2016 Bacillus firmus for the biological control of Meloidogyne hapla and Xiphinema americanum Lisa M. Valencia Follow this and additional works at: https://researchrepository.wvu.edu/etd Recommended Citation Valencia, Lisa M., "Bacillus firmus for the biological control of Meloidogyne hapla and Xiphinema americanum" (2016). Graduate Theses, Dissertations, and Problem Reports. 6860. https://researchrepository.wvu.edu/etd/6860 This Thesis is protected by copyright and/or related rights. It has been brought to you by the The Research Repository @ WVU with permission from the rights-holder(s). You are free to use this Thesis in any way that is permitted by the copyright and related rights legislation that applies to your use. For other uses you must obtain permission from the rights-holder(s) directly, unless additional rights are indicated by a Creative Commons license in the record and/ or on the work itself. This Thesis has been accepted for inclusion in WVU Graduate Theses, Dissertations, and Problem Reports collection by an authorized administrator of The Research Repository @ WVU. For more information, please contact [email protected]. Bacillus firmus for the biological control of Meloidogyne hapla and Xiphinema americanum Lisa M. Valencia Thesis submitted to the Davis College of Agriculture, Natural Resources and Design at West Virginia University in partial fulfillment of the requirements for the degree of Master of Science in Applied and Environmental Microbiology James B. Kotcon, Ph.D., Chair Alan J. Sexstone, Ph.D. Gary K. Bissonnette, Ph.D. Division of Plant and Soil Sciences Morgantown, WV 2016 Keywords: Bacillus firmus, Meloidogyne hapla, Xiphinema americanum, plant-parasitic nematode, biological control, bionematicide, mode of action, chemotaxis Copyright 2016 Lisa M. -
Nucleotide Sequence of Hungarian Grapevine Chrome Mosaic Nepovirus RNA1 Olivier Le Gall, Thierry Candresse, Veronique Brault, Jean Dunez
Nucleotide sequence of Hungarian Grapevine Chrome Mosaic Nepovirus RNA1 Olivier Le Gall, Thierry Candresse, Veronique Brault, Jean Dunez To cite this version: Olivier Le Gall, Thierry Candresse, Veronique Brault, Jean Dunez. Nucleotide sequence of Hungarian Grapevine Chrome Mosaic Nepovirus RNA1. Nucleic Acids Research, Oxford University Press, 1989, 17 (19), pp.7795-7807. hal-02726835 HAL Id: hal-02726835 https://hal.inrae.fr/hal-02726835 Submitted on 2 Jun 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Nucleic Research Volume 17 Number 19 1989 Nucleic Acids Research Nucleotide sequence of Hungarian grapevine chrome mosaic nepovirus RNA1 O.Le Gall, T.Candresse, V.Brault and J.Dunez Station de Pathologie Vegetale, INRA, BP 131, 33140 Pont de la Maye, France Received May 24, 1989; Revised and Accepted August 25, 1989 EMBL accesssion no. X15346 ABSTRACT The nucleotide sequence of the RNAl of hungarian grapevine chrome mosaic virus, a nepovirus very closely related to tomato black ring virus, has been determined from cDNA clones. It is 7212 nucleotides in length excluding the 3' terminal poly(A) tail and contains a large open reading frame extending from nucleotides 216 to 6971. -
Tomato Ringspot Virus
-- CALIFORNIA D EP ARTM ENT OF cdfaFOOD & AGRICULTURE ~ California Pest Rating Proposal for Tomato ringspot virus Current Pest Rating: C Proposed Pest Rating: C Realm: Riboviria; Phylum: incertae sedis Family: Secoviridae; Subfamily: Comovirinae Genus: Nepovirus Comment Period: 6/2/2020 through 7/17/2020 Initiating Event: On August 9, 2019, USDA-APHIS published a list of “Native and Naturalized Plant Pests Permitted by Regulation”. Interstate movement of these plant pests is no longer federally regulated within the 48 contiguous United States. There are 49 plant pathogens (bacteria, fungi, viruses, and nematodes) on this list. California may choose to continue to regulate movement of some or all these pathogens into and within the state. In order to assess the needs and potential requirements to issue a state permit, a formal risk analysis for Tomato ringspot virus (ToRSV) is given herein and a permanent pest rating is proposed. History & Status: Background: Tomato ringspot virus is widespread in North America. Despite the name, it is of minor importance to tomatoes. However, it infects many other hosts and causes particularly severe losses on perennial woody plants including fruit trees and brambles. ToRSV is a nepovirus; “nepo” stands for nematode- transmitted polyhedral. It is part of a large group of more than 30 viruses, each of which may attack many annual and perennial plants and trees. They cause severe diseases of trees and vines. ToRSV is vectored by dagger nematodes in the genus Xiphinema and sometimes spreads through seeds or can be transmitted by pollen to the pollinated plant and seeds. ToRSV is often among the most important diseases for each of its fruit tree, vine, or bramble hosts, which can suffer severe losses in yield or be -- CALIFORNIA D EP ARTM ENT OF cdfaFOOD & AGRICULTURE ~ killed by the virus. -
Pest Categorisation of Non‐EU Viruses of Rubus L
SCIENTIFIC OPINION ADOPTED: 21 November 2019 doi: 10.2903/j.efsa.2020.5928 Pest categorisation of non-EU viruses of Rubus L. EFSA Panel on Plant Health (PLH), Claude Bragard, Katharina Dehnen-Schmutz, Paolo Gonthier, Marie-Agnes Jacques, Josep Anton Jaques Miret, Annemarie Fejer Justesen, Alan MacLeod, Christer Sven Magnusson, Panagiotis Milonas, Juan A Navas-Cortes, Stephen Parnell, Roel Potting, Philippe Lucien Reignault, Hans-Hermann Thulke, Wopke Van der Werf, Antonio Vicent Civera, Jonathan Yuen, Lucia Zappala, Thierry Candresse, Elisavet Chatzivassiliou, Franco Finelli, Stephan Winter, Domenico Bosco, Michela Chiumenti, Francesco Di Serio, Franco Ferilli, Tomasz Kaluski, Angelantonio Minafra and Luisa Rubino Abstract The Panel on Plant Health of EFSA conducted a pest categorisation of 17 viruses of Rubus L. that were previously classified as either non-EU or of undetermined standing in a previous opinion. These infectious agents belong to different genera and are heterogeneous in their biology. Blackberry virus X, blackberry virus Z and wineberry latent virus were not categorised because of lack of information while grapevine red blotch virus was excluded because it does not infect Rubus. All 17 viruses are efficiently transmitted by vegetative propagation, with plants for planting representing the major pathway for entry and spread. For some viruses, additional pathway(s) are Rubus seeds, pollen and/or vector(s). Most of the viruses categorised here infect only one or few plant genera, but some of them have a wide host range, thus extending the possible entry pathways. Cherry rasp leaf virus, raspberry latent virus, raspberry leaf curl virus, strawberry necrotic shock virus, tobacco ringspot virus and tomato ringspot virus meet all the criteria to qualify as potential Union quarantine pests (QPs). -
Theory Manual Course No. Pl. Path
NAVSARI AGRICULTURAL UNIVERSITY Theory Manual INTRODUCTORY PLANT NEMATOLOGY Course No. Pl. Path 2.2 (V Dean’s) nd 2 Semester B.Sc. (Hons.) Agri. PROF.R.R.PATEL, ASSISTANT PROFESSOR Dr.D.M.PATHAK, ASSOCIATE PROFESSOR Dr.R.R.WAGHUNDE, ASSISTANT PROFESSOR DEPARTMENT OF PLANT PATHOLOGY COLLEGE OF AGRICULTURE NAVSARI AGRICULTURAL UNIVERSITY BHARUCH 392012 1 GENERAL INTRODUCTION What are the nematodes? Nematodes are belongs to animal kingdom, they are triploblastic, unsegmented, bilateral symmetrical, pseudocoelomateandhaving well developed reproductive, nervous, excretoryand digestive system where as the circulatory and respiratory systems are absent but govern by the pseudocoelomic fluid. Plant Nematology: Nematology is a science deals with the study of morphology, taxonomy, classification, biology, symptomatology and management of {plant pathogenic} nematode (PPN). The word nematode is made up of two Greek words, Nema means thread like and eidos means form. The words Nematodes is derived from Greek words ‘Nema+oides’ meaning „Thread + form‟(thread like organism ) therefore, they also called threadworms. They are also known as roundworms because nematode body tubular is shape. The movement (serpentine) of nematodes like eel (marine fish), so also called them eelworm in U.K. and Nema in U.S.A. Roundworms by Zoologist Nematodes are a diverse group of organisms, which are found in many different environments. Approximately 50% of known nematode species are marine, 25% are free-living species found in soil or freshwater, 15% are parasites of animals, and 10% of known nematode species are parasites of plants (see figure at left). The study of nematodes has traditionally been viewed as three separate disciplines: (1) Helminthology dealing with the study of nematodes and other worms parasitic in vertebrates (mainly those of importance to human and veterinary medicine). -
STUDIES on XIPHINEMA AMERICANUM SENSU LATD with DESCRIPTIONS of FIFTEEN NEW SPECIES (NEMATODA, LONGIDORIDAE) by Lima
~emat~mfli't (1979), 7 51-106. Laboratorio di Nematologia Agraria del C.N.R. - 70126 Bari, Italy STUDIES ON XIPHINEMA AMERICANUM SENSU LATD WITH DESCRIPTIONS OF FIFTEEN NEW SPECIES (NEMATODA, LONGIDORIDAE) By FRANCO LAMBERTI AND TERESA BLEVE-ZACHEO Lima (1965) was the first to hypothesize that Xiphinema ameri canum Cobb, 1913 was a complex of different species in which he listed X. americanum, X. brevicolle Lordello et Da Costa, 1961, X. opisthohysterum Siddiqi, 1961 and four undescribed species (Lima, 1968). One of them was later described as X. mediterraneum Martelli et Lamberti, 1967 (Lamberti and Martelli, 1971) and recently synon ymized with X. pachtaicum (Tulaganov, 1938) Kirijanova, 1951 (Sid diqi and Lamberti, 1977). The morphometrical variability in X. ame ricanum was also studied by Tarjan (1968) who, after having examined 75 world-wide collected populations, concluded that the species status of X. brevicolle, X. opisthohysterum and Lima's Mediterranean species, presently X. pachtaicum, was justified but that all the other variations he had observed should be considered as geographical variants, cor related with climatic influences, within the X. americanum complex (Tarjan, 1969). In 1974 Heyns stated that «demarcation of species within the group is problematical and unsatisfactory although several of the species proposed by Lima seem to be justified ». Because of the importance of X. americanum as a vector of some plant viruses (Taylor and Robertson, 1975) we thought it useful to carry out studies which would clarify the identity of several popu lations from different geographical locations and establish the re lationships with this and the other related species. -
Molecular and Morphological Characterisation of Species
Nematology, 2011, Vol. 13(3), 295-306 Molecular and morphological characterisation of species within the Xiphinema americanum-group (Dorylaimida: Longidoridae) from the central valley of Chile ∗ Pablo MEZA 1,2, ,ErwinABALLAY 1 and Patricio HINRICHSEN 2 1 Faculty of Agronomy, Universidad de Chile, Avenida Santa Rosa 11315, Santiago, Chile 2 Biotechnology Laboratory, INIA La Platina, Avenida Santa Rosa 11610, Santiago, Chile Received: 7 January 2010; revised: 21 June 2010 Accepted for publication: 21 June 2010 Summary – Species of the Xiphinema americanum-group are among the most damaging nematodes for a diverse range of crops. This group includes 51 nominal species throughout the world. They are very difficult to identify by traditional taxonomic methods. Despite its importance in agriculture, the species composition of this group in many countries, including Chile, remains unknown. In order to identify the species in the central valley of Chile, we studied the morphological, morphometric and molecular diversity of 13 populations. Through classical taxonomic methods two species, X. inaequale and X. peruvianum, were identified with clear differences in the shape of the lip region. The DNA sequences of the ITS of ribosomal genes revealed divergences in the nucleotide sequences of the two species from 7.3% in ITS1 to 14.7% in ITS2. These results confirmed the presence of two distinct species, namely X. peruvianum and X. inaequale, in the northern and southern parts of the central valley of Chile, respectively. PCR-RFLP was developed for rapid species identification of these two species. Keywords – molecular, morphology, morphometrics, taxonomy, Xiphinema californicum, Xiphinema inaequale, Xiphinema peruvia- num. The Xiphinema americanum-group comprises 51 nom- nologies has opened a new spectrum of possibilities in ne- inal species found all over the world (Lamberti et al., matode taxonomy. -
Morphologic and Molecular Identification of Xiphinema Americanum Associated with Pine Trees
International Journal of Molecular Biology: Open Access Review Article Open Access Morphologic and molecular identification of Xiphinema americanum associated with pine trees Abstract Volume 3 Issue 3 - 2018 Xiphinema spp. member Xiphinema americanum, isolated from soils around roots of pine Lerzan Özturk,1 Tohid Behmand,2 Bahadir tree (Pinus spp.) were identified by morphological and molecular methods. Morphologic Sin,3 Gürkan Güvenç Avci,1 İbrahim Halil identification of species was carried out under microscope by observing featuring 2 characteristics of heat killed and TAF fixed females. On the other handa polymerase chain Elekcioğlu reaction protocol has been developed for the specific molecular identification ofXiphinema 1Viticulture Research Institute, Turkey americanum. A primer sets amlifying ITS1 region were designed (X.americanum F- X. 2Plant Protection Department, Faculty of Agriculture, Çukurova americanumR) and used in diagnostic tests. After running %1 agarose gel, DNA from a University, Turkey 3 single Xiphinema americanum female yielded amplification products with expected lenght Plant Protection Department, Faculty of Agriculture, of 183 bp. Xiphinema americanum was succesfully identified with species-specific primers Gaziosmanpaşa University, Turkey developed from ITS-1 region of rDNA. Correspondence: Lerzan Özturk, Viticulture Research Keywords: Xiphinema americanum, morphology, molecular identification, PCR Institute, Turkey, Email [email protected] Received: March 30, 2018 | Published: May 02, 2018 Introduction divergence of DNA region in many populations of the same species and in closely related species. Clear identification of cyst nematodes, The Xiphinema americanum-group is a large group containing lesion nematodes, stunt nematodes, dagger nematodes and root knot 55 nematode species occurring around roots of several plants and nematodes was achieved with this method.8‒11 This method allows 1 trees.