Table S1. List of 206 publications authored by William T. Peterson.

Peterson, W.T., 1969. Species diversity and community structure of the zooplankton of Kaneohe Bay, Oahu, Hawaii. University of Hawaii. 91 pp. (Major Professor: R.I. Clutter). Peterson, W.T., 1973. Upwelling indices and annual catches of Dungeness crab, Cancer magister along the west coast of the United States. Fish. Bull. U.S. 71, 902–910. Peterson, W.T., Miller, C.B., 1975. Year-to-year variations in the planktology of the Oregon upwelling zone. Fish. Bull. U.S. 73, 642–653. Sullivan, B.K., Miller, C.B., Peterson W.T., Soeldner, A., 1975. Mandibular morphology of copepods from the subarctic Pacific and the Oregon coastal zone. Mar. Biol. 30, 175– 182. https://doi.org/10.1007/BF00391591. Peterson, W.T., Miller, C.B., 1976. Zooplankton along the continental shelf off Newport, Oregon: 1969-1972. Distribution, abundance, seasonal cycle and year-to-year variations. Oregon State University, Sea Grant College Program, Publication Number ORESU-T-76-002, June 1976, 111pp. Peterson, W.T., Miller, C.B., 1977. The seasonal cycle of zooplankton abundance and species composition along the central Oregon coast. Fish. Bull. U.S. 75, 717–724. Pearcy, W.G., Lorz, H.V., Peterson, W.T., 1979. A comparison of the feeding habits of migratory and non-migratory Stenobrachius leucopsarus (Myctophidae). Mar. Biol. 51, 1-8. https://doi.org/10.1007/BF00389025. Peterson, W.T., Miller, C.B., Hutchinson, A., 1979. Zonation and maintenance of copepod populations in the Oregon upwelling zone. Deep-Sea Res. 26A, 467–494. https://doi.org/10.1016/0198-0149(79)90091-8. Peterson, W.T., 1980. Life history and ecology of Calanus marshallae Frost in the Oregon upwelling zone. Oregon State University. 200 pp. (Major Professor: C.B. Miller). Peterson, W.T., Brodeur, R., Pearcy, W.G., 1982. Diets of juvenile salmon in the Oregon upwelling zone in June 1979. Fish. Bull. U.S. 80, 841–851.

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McManus, G.B., Wyman, K.D., Peterson, W.T., Wurster, C.F., 1983. Factors affecting the elimination of PCBs in the marine copepod Acartia tonsa. Estuar. Coastal Shelf Sci. 17, 421–430. https://doi.org/10.1016/0272-7714(83)90127-0. Peterson, W.T., Ausubel, S., 1984. Diets and selective feeding by larvae of Atlantic mackerel, Scomber scombrus on zooplankton. Mar. Ecol. Prog. Ser. 17, 65–75. Peterson, W.T., 1985. Abundance, age structure and in situ egg production rates of the copepod Temora longicornis in Long Island Sound. Bull. Mar. Sci. 37, 726–738. Beckman, B.R., Peterson, W.T., 1986. Egg production by Acartia tonsa in Long Island Sound. J. Plankton Res. 8, 917–925. https://doi.org/10.1093/plankt/8.5.917. Bowman, M.J., Yentsch, C.M., Peterson, W.T., (eds.). 1986. Tidal mixing and plankton dynamics. Springer-Verlag. Lecture notes on coastal and estuarine studies, 17, 502 pp. Monteleone, D.M., Peterson, W.T., 1986. Feeding ecology of American sand lance, Ammodytes americanus, larvae from Long Island Sound. Mar. Ecol. Prog. Ser. 30,133– 143. Peterson, W.T. 1986. Development, growth and survivorship of the copepod Calanus marshallae in the laboratory. Mar. Ecol. Prog. Ser. 29, 1–12. Peterson, W.T., 1986. The effects of seasonal stratification on plankton dynamics in Long Island Sound. in tidal mixing and plankton dynamics. M.J. Bowman, Yentsch, C.M., Peterson, W.T., (eds.) Springer-Verlag, Lecture notes on coastal and estuarine studies. 17, 297–320. Peterson, W.T., Dam, H.G., 1986. Hydrography and plankton of Jamaica Bay, New York. in Proceedings of the Conference on Science in National Parks, Vol. 6: Fisheries and Coastal Wetlands Research, G. Larson, Soukup, M. (eds.), 151-170 pp., U.S. Nat'l Park Service, George Wright Society. Tiselius, P.T., Peterson, W.T., 1986. Life history and population dynamics of the chaetognath Sagitta elegans in central Long Island Sound. J. Plankton Res. 8, 183–195. https://doi.org/10.1093/plankt/8.1.183.

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Bellantoni, D.C., Peterson, W.T., 1987. Temporal variability in egg production rates of Acartia tonsa in Long Island Sound. J. Exp. Mar. Biol. Ecol. 107, 199–208. https://doi.org/10.1016/0022-0981(87)90037-2. Monteleone, D.M., Peterson, W.T., Williams, G.C., 1987. Interannual fluctuations in density of sand lance larvae, Ammodytes americanus in Long Island Sound, 1951-1983. Estuaries 10, 246–254. https://doi.org/10.2307/1351852. Peterson, W.T., Bellantoni, D.C., 1987. Relationships between hydrodynamics, phytoplankton cell size and copepod fecundity. S. Afr. J. Mar. Sci. 5,411–421. https://doi.org/10.2989/025776187784522748. Dam, H., Peterson, W.T., 1988. The effect of temperature on the gut clearance rate constant of planktonic copepods. J. Exp. Mar. Biol. Ecol. 123, 1–14. https://doi.org/10.1016/0022-0981(88)90105-0. Dam, H., Peterson, W.T., Bellantoni, D.C., 1988. Relationships between copepod ingestion rates and phytoplankton cell size and biochemical composition during upwelling events off central Chile. In: Mem. Soc. Cien. Nat. La Salle, 48(Suppl. 3), 33–51. McManus, G.B., Peterson, W.T., 1988. Bacterioplankton production in the nearshore zone during upwelling off central Chile. Mar. Ecol. Prog. Ser. 43, 11–17. Peterson, W.T., 1988. Rates of egg production by the copepod Calanus marshallae in the laboratory and in the sea off Oregon. Mar. Ecol. Prog. Ser. 47, 229–237. Peterson, W.T., Arcos, D., McManus, G., Dam, H., Bellantoni, D. Johnson, T., Tiselius, P.T., 1988. The nearshore zone during coastal upwelling off central Chile: daily variability and coupling between primary and secondary production. Prog. Oceanogr. 20, 1–40. https://doi.org/10.1016/0079-6611(88)90052-3. Attwood, C.G., Peterson, W.T., 1989. Reduction in fecundity and lipids of the copepod Calanus australis (Brodskii) by strongly pulsed upwelling. J. Exp. Mar. Biol. Ecol. 129, 121–131. https://doi.org/10.1016/0022-0981(89)90051-8. Peterson, W.T., Dam, H., 1990. The influence of copepod 'swimmers' on pigment fluxes in brine-filled vs. ambient seawater-filled sediment traps. Limnol. Oceanogr. 35, 448– 455. https://doi.org/10.4319/lo.1990.35.2.0448.

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Peterson, W., Painting, S., 1990. Developmental rates of the copepods Calanus australis and Calanoides carinatus in the laboratory, with discussion of methods used for calculation of development time. J. Plankton Res. 12, 283–293. https://doi.org/10.1093/plankt/12.2.283. Peterson, W., Painting, S., Barlow, R., 1990. Feeding rates of Calanoides carinatus: a comparison of five methods including evaluation of the gut fluorescence method. Mar. Ecol. Prog. Ser. 63, 85–92. Peterson, W., Painting, S., Hutchings, L., 1990. Diel variations in gut pigment content, diel vertical migration and estimates of grazing impact of copepods in the southern Benguela up welling region, in October 1987. J. Plankton Res. 12, 259–281. https://doi.org/10.1093/plankt/12.2.259. Shillington, F., Peterson, W.T., Hutchings, L., Probyn, T., Waldron, H., 1990. A cool upwelling filament off Luderitz, Namibia: Physical and biological observations. Deep-Sea Res. 37, 1753–1772. https://doi.org/10.1016/0198-0149(90)90075-7. Dam, H., Peterson, W.T., Okubo, A., 1991. A simple mathematical analysis of the limitation to inferring feeding behavior of zooplankton from gut content. Mar. Ecol. Prog. Ser. 69, 41–45. Dam, H., Peterson, W.T., 1991. In situ feeding behavior of the copepod Temora longicornis in Long Island Sound: effects of seasonal changes in chlorophyll size fractions and body size on gut pigment content and ingestion rate. Mar. Ecol. Prog. Ser. 71, 113–123. Peterson, W.T., Tiselius, P., Kiørboe, T., 1991. Copepod egg production, moulting and growth rates, and secondary production in the Skagerrak in August 1988. J. Plankton Res. 13, 131–154. https://doi.org/10.1093/plankt/13.1.131. Verheye, H.M., Hutchings, L., Peterson, W.T., 1991. Life history and population maintenance strategies of Calanoides carinatus (Copepod; Calanoida) in the southern Benguela ecosystem. S. Afr. J. Mar. Sci. 11, 179–191. https://doi.org/10.2989/025776191784287600. Walker, D., Peterson, W.T., 1991. Relationships between hydrography, phytoplankton cell size and species composition, size-fractionated primary production and copepod

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production in the southern Benguela. S. Afr. J. Mar. Sci. 11, 289–305. https://doi.org/10.2989/025776191784287529. Largier, J.L., Chapman, P., Peterson, W.T., Swart, V.P., 1992. The Western Agulhas Bank: circulation, stratification and ecology. S. Afr. J. Mar. Sci. 12, 319–339. https://doi.org/10.2989/02577619209504709. Peterson, W., Schwing, F., Sissenwine, M., 1992. Integrated systems to observe Global Ocean Ecosystem Dynamics (GLOBEC) now and for the 21st century. Proc. Mar. Tech. Soc. 1992. 2, 528–534. Peterson, W., Hutchings, L., Huggett, J., Largier, J., 1992. Anchovy spawning in relation to the biomass and replenishment rate of their copepod prey on the western Agulhas Bank. S. Afr. J. Mar. Sci. 12, 487–500. https://doi.org/10.2989/02577619209504720. Shillington, F.A., Hutchings, L., Probyn, T.A., Waldron, H.N., Peterson, W.T., 1992. Filaments and the Benguela frontal loop: offshore advection or recirculation loops? S. Afr. J. Mar. Sci. 12, 207–218. https://doi.org/10.2989/02577619209504703. Dam, H.G., Peterson, W.T., 1993. Seasonal contrasts in the diel vertical distribution, feeding behavior, and grazing impact of the copepod Temora longicornis in Long Island Sound. J. Mar. Res. 51, 561–594. https://doi.org/10.1357/0022240933223972. Painting, S.J., Lucas, M.I., Peterson, W.T., Brown, P.C., Hutchings, L., Mitchell-Innes, B.A., 1993. Temporal changes in bacterial abundance and biomass during the development of phytoplankton and zooplankton communities in an upwelling plume in the southern Benguela. Mar. Ecol. Prog. Ser. 100, 35–53. Dam, H.G., Peterson, W.T., Bellantoni, D.C., 1994. Seasonal feeding and fecundity of the calanoid copepod Acartia tonsa in Long Island Sound: Is omnivory important to egg production? Proc. Fifth Intnl Conf. Copepoda. Hydrobiologia, 292-293:191-199. https://doi.org/10.1007/BF00229941. Peterson, W.T., Kimmerer, W.J., 1994. Processes controlling recruitment of the copepod Temora longicornis: egg production, egg mortality and cohort survival. Limnol. Oceanogr. 39, 1594–1605. https://doi.org/10.4319/lo.1994.39.7.1594.

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Verheye, H.M., Hutchings, L., Huggett, J.A., Carter, R.A., Peterson, W.T., Painting, S.J., 1994. Community structure, distribution and trophic ecology of zooplankton on the Agulhas Bank with special reference to copepods. S. Afr. J. Sci. 90, 154–165. Hutchings, L., Verheye, H.M., Mitchell-Innes, B.A., Peterson, W.T., Huggett, J.A., Painting, S.J., 1995. Copepod production in the southern Benguela system. ICES J. Mar. Sci. 52, 439– 454. https://doi.org/10.1016/1054-3139(95)80059-X. Peterson, W.T., Hutchings, L., 1995 Distribution, abundance and production rates of Calanus australis on the Agulhas Bank in relation to spatial variations in hydrography and chlorophyll. J. Plankton Res. 17, 2275–2294. https://doi.org/10.1093/plankt/17.12.2275. Piontkofski, S.A., Williams, R., Peterson, W.T., Kosnirev, V.K., 1995. Relationship between oceanic mesozooplankton and energy of eddy fields. Mar. Ecol. Prog. Ser. 128, 35–41. https://doi.org/10.3354/meps128035 Peterson, W.T., Dam, H.G., 1996. Pigment ingestion rates and egg production rates of the calanoid copepod Temora longicornis: implications for gut-pigment loss and omnivorous feeding. J. Plankton Res. 18, 855–861. https://doi.org/10.1093/plankt/18.5.855. Piontkofski, S.A., Williams, R., Peterson, W.T., Yunev, O.A., Minkina, N.I., Vladimirov, V.L., Blinko, A., 1997. Spatial heterogeneity of the planktonic fields in the upper mixed layer of the open ocean. Mar. Ecol. Prog. Ser. 148, 145–154. https://doi.org/10.3354/meps148145. Gómez-Gutiérrez, J., Peterson, W.T., 1998. Egg production rates of eight copepod species during the summer of 1997 off Newport, Oregon, USA. J. Plankton Res. 21, 637–657. https://doi.org/10.1093/plankt/21.4.637. Peterson, W.T. 1998. Life cycles of copepods in upwelling zones. J. Mar. Syst. 15, 313–326. https://doi.org/10.1016/S0924-7963(97)00082-1. Brodeur, R., Peterson, W.T., Boehlert, G., Casillas, E., Schiewe, M., Eldridge, M., Lindley, S., Helle, J., Heard, W., 2000. A coordinated research plan for estuarine and ocean

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research on Pacific salmon. Fisheries 25(6), 7–16. https://doi.org/10.1577/1548- 8446(2000)025<0007:ACRPFE>2.0.CO;2. Peterson, W.T., 2001. Patterns in stage durations and development among marine and freshwater calanoid and cyclopoid copepods: a review of rules, physiological constraints and evolutionary significance. Hydrobiologia 453, 91–105. https://doi.org/10.1023/A:1013111832700. Sorte, C.J., Peterson, W.T., Morgan, C.A., Emmett, R.L., 2001. Larval dynamics of the sand crab, Emerita analoga, off the central Oregon coast during a strong El Niño period. J. Plankton Res. 23, 939–944. https://doi.org/10.1093/plankt/23.9.939. Tynan, C.T., DeMaster, D.P., Peterson, W.T., 2001. Endangered right whales on the southeastern Bering Sea shelf. Science, 294, 1894. https://doi.org/10.1126/science.1065682. Batchelder, H., Barth, J.A., Kosro, P.M., Strub, P.T., Brodeur, R.D., Peterson, W.T., Tynan, C.T., Ohman, M.D., Bostford, L.W., Powell, T.M., Ainley, D.G., Mackas, D.L., Hickey, B.M., Ramp, S.R., Schwing, F.B., 2002. The GLOBEC Northeast Pacific California Current System Program. Oceanography 15, 36–47. Irigoien, X., Harris, P., Verheye, H.M., Joly, P., Runge, J., Starr, M., Pond, D., Campbell, R., Shreeve, R., Ward, P., Smith, A.N., Dam, H.G., Peterson, W.T., Tirelli, V., Koski, M., Smith, T., Harbour, D., Davidson, R., 2002. Copepod hatching success in marine ecosystems with high diatom concentrations. Nature 419, 387–389. https://doi.org/10.1038/nature01072. Peterson, W.T., Keister, J.A., 2002. The effect of a large cape on distribution patterns of coastal and oceanic copepods off Oregon and northern California during the 1998- 1999 El Niño-La Niña. Prog. Oceanogr. 53, 389–411. https://doi.org/10.1016/S0079- 6611(02)00038-1. Peterson, W.T., Gómez-Gutiérrez, J., Morgan, C., 2002. Cross-shelf variation in calanoid copepod production during summer 1996 along the Oregon coast, USA. Mar. Biol. 141, 353–365. https://doi.org/10.1007/s00227-002-0821-x.

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Peterson, W.T., Keister J.A., Feinberg, L.R., 2002. The effects of the 1997-99 El Niño/La Niña event on hydrography and zooplankton off the central Oregon coast. Prog. Oceanogr. 54, 381–398. https://doi.org/10.1016/S0079-6611(02)00059-9. Goméz-Gutiérrez, J., Peterson, W.T., de Robertis, A., Brodeur, R.D., 2003. Mass mortality of krill caused by parasitoid ciliate. Science 301, 339. https://doi.org/10.1126/science.1085164. Feinberg, L.R., Peterson, W.T., 2003. Variability in duration and intensity of euphausiid spawning off central Oregon, 1996-2001. Prog. Oceanogr. 57, 363–379. https://doi.org/10.1016/S0079-6611(03)00106-X. Keister, J.E., Peterson, W.T., 2003. Zonal and seasonal variations in zooplankton community structure off the central Oregon coast, 1998-2000. Prog. Oceanogr. 57, 341–361. https://doi.org/10.1016/S0079-6611(03)00105-8. Morgan, C.A., Peterson, W.T., Emmett, R.L., 2003. Onshore-offshore variations in copepod community structure off the Oregon coast during the summer upwelling season. Mar. Ecol. Prog. Ser. 249, 223–236. https://doi.org/10.3354/meps249223. Peterson, W.T., Keister, J.E., 2003. Interannual variability in copepod community composition at a coastal station in the northern California Current: a multivariate approach. Deep-Sea Res. 50, 2499–2517. https://doi.org/10.1016/S0967- 0645(03)00130-9. Peterson, W.T., Schwing, F.B., 2003. A new climate regime in Northeast Pacific ecosystems. Geophys. Res. Lett. 30(17), 1896. https://doi.org/10.1029/2003GL017528. Schabetsberger, R., Morgan, C.A., Brodeur, R.D., Potts, C.L., Peterson, W.T., Emmett, R.L., 2003. Prey selectivity and diel feeding chronology of juvenile Chinook (Oncorhynchus tshawytscha) and coho (O. kisutch) salmon in the Columbia River plume. Fish. Ocean. 12, 523–540. https://doi.org/10.1046/j.1365-2419.2003.00231.x. Goericke, R., Venrick, E., Mantyla, A., Bograd, S.J., Gaxiola-Castro, G., Gómez-Valdes, J., Peterson, W.T., Hooff, R., Huyer, A., Smith, R.L., Wheeler, P., Lavaniegos, B.E., Hyrenbach, K.D., Sydeman, W.J., Schwing, F.B., 2004. The State of the California

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Current, 2003–2004: a rare “normal” year. Calif. Coop. Oceanic Fish. Invest. Rep. 45, 27–59. Mackas, D.J., Peterson, W.T., Zamon, J., 2004. Interannual-to-decadal anomalies of zooplankton communities along the continental margin of British Columbia and Oregon. Deep–Sea Res. 51, 875–896. https://doi.org/10.1016/j.dsr2.2004.05.011. Halpin, P.M., Strub, P.T., Peterson, W.T., Baumgartner, T., 2004. An overview of interactions among oceanography, marine ecology, climatic and human disruptions along the eastern margins of the Pacific Ocean. Rev. Chilena de Histo. Nat. 77, 371–409. Ressler, P.H., Brodeur, R.D. Peterson, W.T., Pierce, S.D., Vance, P.M., Roestad, A.R., Barth, J.A., 2004. The spatial distribution of euphausiid aggregations in the northern California Current during August 2000. Deep Sea Res. II, 52, 89–108. https://doi.org/10.1016/j.dsr2.2004.09.032. Valdes, L., Harris, R., Ikeda, T., McKinnell, S., Peterson, W.T., 2004. The role of zooplankton in global ecosystem dynamics: Comparative studies from the world oceans. ICES J. Mar. Sci. 61, 441–444. https://doi.org/10.1016/j.icesjms.2004.03.001. Goericke, R. Venrick, E., Mantyla, A., Hooff, R., Collins, C., Gaxiola-Castro, G., Bograd, S.J., Peterson, W.T., Marnovic, B., Durazo, R., Huyer, A., Smith, R.L., Wheeler, P., Chavez, F. Lo, N., Hyrenbach, K.D., Sydeman, W.J., Schwing, F.B., 2005. The State of the California Current, 2004-2005, still cool? Calif. Coop. Oceanic Fish. Invest. Rep. 46, 32–72. Gómez-Gutiérrez, J., Peterson, W.T., Miller, C.B., 2005. Cross-shelf life-stage segregation and community structure of the euphausiids off central Oregon (1970-1972). Deep-Sea Res. II, 52, 289–315. https://doi.org/10.1016/j.dsr2.2004.09.023. Hirst, A.G., Peterson, W.T., Rothery, P., 2005. Errors in estimates of juvenile copepod growth rates are widespread: problems with the moult rate method. Mar. Ecol. Prog. Ser. 296, 263–279. https://doi.org/10.3354/meps296263. Keister, J.E., Johnson, T.B., Morgan, C.A., Peterson, W.T., 2005. Biological indicators of the timing and direction of warm-water advection during the 1997/98 El Niño off the central Oregon coast, USA. Mar. Ecol. Prog. Ser. 295, 43–48. https://doi.org/10.3354/meps295043.

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Lamb, J., Peterson, W.T., 2005. Ecological zonation of zooplankton in the COAST study region off central Oregon in June and August 2001 with consideration of retention mechanisms. J. Geophys. Res. 110, C10S15, https://doi.org/10.1029/2004JC00250. Sutor, M., Cowles, T.J., Peterson, W.T. 2005. Acoustic observations of finescale zooplankton distributions in the Oregon upwelling region. Deep-Sea Res. II, 52, 109–121. https://doi.org/10.1016/j.dsr2.2004.09.029. Sutor, M., Cowles, T.J., Peterson, W.T., Lamb, J., 2005. Comparison of acoustic and net sampling systems to determine patterns in zooplankton distribution. J. Geophys. Res. 110, C10S15, https://doi.org/10.1029/2004JC00250. Feinberg, L.R., Shaw, C.T., Peterson, W.T., 2006. Larval development of Euphausia pacifica in the laboratory, with an emphasis on variability in developmental pathways. Mar. Ecol. Prog. Ser. 316, 127–137. https://doi.org/10.3354/meps316127. Gómez-Gutiérrez, J., Peterson, W.T., Morado, F.J., 2006. Discovery of a ciliate parasitoid of euphausiids off Oregon, USA: Collinia oregonensis n. sp. (Apostomatida: Colliniidae). Dis. Aquat. Org. 71, 33–49. https://doi.org/10.3354/dao071033. Gómez-Gutiérrez, J., Feinberg, L.R., Shaw, T., Peterson, W.T., 2006. Variability of brood size and female length of Euphausia pacifica Hansen among three populations in the North Pacific. Mar. Ecol. Prog, Ser. 323, 185–194. https://doi.org/10.3354/meps323185. Hooff, R.C., Peterson, W.T., 2006. Recent increases in copepod biodiversity as an indicator of changes in ocean and climate conditions in the northern California current ecosystem. Limnol. Oceanogr. 51, 2607–2620. https://doi.org/10.4319/lo.2006.51.6.2607. Landers, S.C., Gómez-Gutiérrez, J., Peterson, W.T., 2006. Gymnodinioides pacifica, n. sp., an exuviotrophic ciliated protozoan (Ciliophora, Apostomatida) from euphausiids of the Northeastern Pacific. Europ. J. Protistol. 42, 97–106. https://doi.org/10.1016/j.ejop.2006.01.003. Kosro, P.M., Peterson, W.T., Hickey, B.M., Shearman, R.K., Pierce, S.D. 2006. Physical versus biological spring transition: 2005, Geophys. Res. Lett., 33, L22S03, https://doi.org/10.1029/2006GL027072.

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Largier, J., Kudela, R.B., Peterson, W.T., 2006. Preface to special issue, “Wind driven coastal upwelling ecosystems: the WEST program”. Deep-Sea Research. 53, 25–26, Preface v– vi. Mackas, D.L., Peterson, W.T., Ohman, M.D., Lavaniegos, B.E., 2006. Zooplankton anomalies in the California Current system before and during the warm ocean conditions of 2005, Geophys. Res. Lett., 33, L22S07, https://doi.org/10.1029/2006GL027930. Peterson, W.T. Emmett, R., Goericke, R., Venrick, E., Mantyla, A., Bograd, S.J., Schwing, F.B., Hewitt, R., Lo, N., Watson, W., Lowery, M., Ralston, S., Forney, K.A., Lavaniegos, B.E., Sydemann, W.J., Hyrenbach, D., Brdley, R.W., Warzybok, P., Chavez, F., Hunter, K., Benson, S., Weise, M., Harvey, J., Gaxiola-Castro, G., Durazo, R., Barlow, J., 2006. The State of the California Current, 2005-2006: warm in the north, cool in the south. Calif. Coop. Oceanic Fish. Invest. Rep. 47, 30–74. Ju, S.-J., Gómez-Gutiérrez, J., Peterson, W.T., Harvey, H.R., 2006. The role of lipid in embryos of the euphausiid Euphausia pacifica and Thysanoessa spinifera. Limnol. Oceanogr. 51, 2398–2408. https://doi.org/10.4319/lo.2006.51.5.2398. Wainwright, T.C., Feinberg, L.R., Hooff, R.C., Peterson, W.T., 2006. A comparison of two lower trophic models for the California Current system. Ecol. Model. 202, 120–131, https://doi.org/10.1016.j.ecolmodel.2006.06.019. Bane, J.M., Spitz, Y.H., Letelier, R.M., Peterson, W.T., 2007. Jet stream intraseasonal oscillations drive dominant ecosystem variations in Oregon’s summertime coastal upwelling system. Proc. Natl. Acad. Sci. 104(33), 13262–13267. https://doi.org/10.1073/pnas.0700926104. Feinberg, L.R., Shaw, C.T., Peterson, W.T., 2007. Long-term laboratory observations of Euphausia pacifica fecundity: a comparison of two geographic regions. Mar. Ecol. Prog. Ser. 341, 141–152. https://doi.org/10.3354/meps341141. Goericke, R. Venrick, E., Koslow, T., Sydeman, W.J., Schwing, F.B., Bograd, S.J., Peterson, W.T., Emmet, R., Lara-Lara, J.R., Gómez-Valdez, J., Hyrenbach, K.D., Bradley, R.W., Weise, M.J., Hayvery, J.T., Coolins, C., Lo, N., 2007. The state of the California Current, 2006- 2007. regional and local processes dominate. Calif. Coop. Oceanic Fish. Invest. Rep. 48,

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33–66. Gómez-Gutiérrez, J., Feinberg, L.R., Shaw, T., Peterson, W.T., 2007. Interannual and geographical variability of the brood size of the euphausiids Euphausia pacifica and Thysanoessa spinifera along the Oregon coast (1999-2004). Deep-Sea Res. 54, 2145– 2169. https://doi.org/10.1016/j.dsr.2007.09.003. Hongsheng, B., Ruppell, R.E., Peterson, W.T., 2007. Modeling the salmon pelagic habitat off the Pacific Northwest coast using logistic regression. Mar. Ecol. Prog. Ser. 336, 249– 265. https://doi.org/10.3354/meps336249. Landers, S.C., Gómez-Gutiérrez, J., Peterson, W.T., 2007. The fine structure of the phoront of Gymnodinoides pacifica, a ciliated protozoa (Ciliophora, Apostomatida) from euphausiids of the Northeastern Pacific. Europ. J. Protistol. 43(3), 239–249. https://doi.org/10.1016/j.ejop.2007.04.002. Parrish, J.K., Bond, N., Nevins, H., Mantua, N., Loeffel, R., Peterson, W.T., Harvey, J.T., 2007. Beached birds and physical forcing in the California Current System. Mar. Ecol. Prog. Ser. 352, 275–288. https://doi.org/10.3354/meps07077. Bi, H., Ruppel, R.E., Peterson, W.T., Casillas, E., 2008. Spatial distribution of ocean habitat of yearling Chinook (Oncorhynchus tshawytscha) and coho (Oncorhynchus kisutch) salmon off Washington and Oregon, USA Fish Oceanogr. 17, 463–476. https://doi.org/10.1111/j.1365-2419.2008.00493.x. Brodeur, R.D., Peterson, W.T., Auth, T.D., Soulen, H.L., Parnel, M.D, Emerson, A., 2008. Interannual and seasonal variability in coastal fish larvae from an upwelling region off central Oregon, USA. Mar. Ecol. Prog. Ser. 366, 187–202. https://doi.org/10.3354/meps07539. Chan, F., Barth, J.A., Lubchenco, J., Kirincich, A., Weeks, H., Peterson, W.T., Menge, B.A., 2008. Novel emergence of anoxia in the California Current large marine ecosystem. Science 319, 920. https://doi.org/10.1126/science.1149016. McClatchie, S., Goericke, R., Koslow, J.A., Schwing, F.B., Bograd, S.J., Charter, R., Watson, W., Lo, N., Hill, K., Gottschalch, J., L’Heureux, M., Xue, Y., Peterson, W.T., Emmet, R., Collins, C., Gaxiola-Castro, G., Durazo, R., Kahru, M., Mitchel, G., Hyrenbach, K.D., Sydeman,

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W.J., Bradley, R.W., Warzybok, P., Bjorkstedt, E.P., 2008. The State of the California Current, 2007-2008. La Niña conditions and their effects on the ecosystem. Calif. Coop. Oceanic Fish. Invest. Rep. 49, 39–76. Peterson, J.O., Peterson, W.T., 2008. Influence of the Columbia River plume on the vertical and horizontal distribution of mesozooplankton over the Washington and Oregon shelf. ICES J. Mar. Sci. 65, 477–483. https://doi.org/10.1093/icesjms/fsn006. Peterson, WT., Schwing, F., 2008. “California Current Ecosystem” in Climate Impacts on U.S. Living Marine Resources: National Marine Fisheries Service Concerns, Activities and Needs. pp 44–63, Kenric Osgood (editor), NOAA Technical Memorandum NMFS- F/SPO-89, August 2008, 118 pp. Suchman, C.L., Daly, E.A., Keister, J.E., Peterson, W.T., Brodeur, R.D., 2008. Feeding patterns and predation potential of scyphomedusae in a highly productive upwelling region. Mar. Ecol. Prog. Ser., 358, 161–172. https://doi.org/10.3354/meps07313. Yoo, S.-J, Batchelder, H., Peterson, W.T., Sydemann, W., 2008. Seasonal, interannual and event scale variation in North Pacific ecosystems. Prog. Oceanogr. 77, 155–181. https://doi.org/10.1016/j.pocean.2008.03.013. Juranek, L.W., Feely, R.A., Peterson, W.T., Alin, S.R., Hales, B., Lee, K., Sabine, L.L., Peterson, J., 2009. A novel method for determination of aragonite saturation state on the continental shelf of central Oregon using multi-parameter relationships with hydrographic data. Geophys. Res. Lett. 36, L24601, https://doi.org/10.1029/2009GL040778. Keister, J.E., Peterson, W.T., Pierce, S.D., 2009. Zooplankton distribution and cross-shelf transfer of carbon in an area of complex mesoscale circulation in the northern California Current. Deep-Sea Res. I 56, 212–231. https://doi.org/10.1016/j.dsr.2008.09.004. Keister, J.E., Cowles, T.J., Peterson, W.T., Morgan, C.A., 2009. Do upwelling filaments result in predictable biological distributions in coastal upwelling ecosystems? Prog. Oceanogr. 83, 303–313. https://doi.org/10.1016/j.pocean.2009.07.042. McClatchie, S., Goericke, R., Schwing, F.B., Bograd, S.J., Peterson, W.T., Emmett, R.L., Charter,

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R., Watson, W., Nancy, L., Hill, K., Curtis, C., Kahru, M., Mitchell, B.G., Koslow, J.A., Gomez-Valdes, J., Lavaniegos, B.E., Gaxiola-Castro, G., Gottschalk, J., L'Heureux, M. , Xue, Y., Manzano-Sarabia, M., Bjorkstedt, E.P., Ralston, S., Field, J., Rogers-Bennett, L., Munger, L., Campbell, G., Merkens, K., Camacho, D., Havron, A., Douglas, A., Hildebrand, J., 2009. The State of the California Current, 2008-2009. 2009. Cold conditions drive regional differences in coastal production. Calif. Coop. Oceanic Fish. Invest. Rep. 50, 43–68. Peterson, W.T. 2009. Copepod species richness as an indicator of long-term changes in the coastal ecosystem of the northern California Current. Calif. Coop. Oceanic Fish. Invest. Rep. 50, 73–81. Peterson, J.O., Peterson, W.T., 2009. The influence of the Columbia River plume on cross- shelf transport of zooplankton. J. Geophys. Res. 114, COOB10, https://doi.org/10.1029/2008JC004965. Shaw, C.T., Feinberg, L.R., Peterson, W.T., 2009. Interannual variations in vital rates of copepods and euphausiids during the RISE study 2004–2006. J. Geophys. Res. Oceans 114(C2). https://doi.org/10.1029/2008JC004826. Schwing, F.B., Peterson, W.T., Cyr, N., Osgood, K.E., 2009. Future research requirements for understanding the effects of climate variability on fisheries for their management. In: The Future of Fisheries Science in North America, (R.J. Beamish and B.J. Rothschild, eds.), Fish & Fisheries Series, Springer Science, pp. 619–634, Springer, Dordrecht. Bjorkstedt, E.P., Goericke, R., McClatchie, S., Weber, E., Watson, W., Lo, N., Peterson, W.T., Emmet, R., Peterson, J.O., Durazo, R., Gaxiola-Castro, G., Chavez, F., Pennington, J.T., Collins, C.A., Field, J., Ralston, S., Sakuma, K., Bogard, S.J., Schwing, F.B., Xue, Y., Sydeman, W.J., Thompson, S.A., Largier, J., Helle, C., Morgan, S., Kim, S.-Y., Merkens, K.P.B., Hildebrand, J.A., Munger, L.M., 2010. State of the California Current 2009–2010: Regional variations persists through transition from La Niña to El Niño (and back?). Calif. Coop. Oceanic Fish. Invest. Rep. 51, 1–31. Cloern, J.E., Hieb, K., Jacobson, T., Sansó, B., Di Lorenzo, E., Stacey, M., Largier, J., Meiring, W., Peterson, W.T., Powell, T., Winder, M., Jassby, A., 2010. Biological communities in San

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Francisco Bay track a North Pacific climate shift. 2010. Geophys. Res. Lett. 37, L21602. https://doi.org/10.1029/2010GL044774. Feinberg, L.R., Peterson, W.T., Shaw, C.T., 2010. The timing and location of spawning for the euphausiid Thysanoessa spinifera off the Oregon coast, USA. Deep-Sea Res. Part II: Topical Stud. Oceanogr. 57(7–8), 572–583. https://doi.org/10.1016/j.dsr2.2009.10.007. Gifford, D., Harris, R.P., McKinnell, S., Peterson, W.T., St John, M.A., 2010. Dynamics of marine ecosystems: target species. GLOBEC Synthesis Book, Chapter 4, 75–88. Oxford Press. Gómez-Gutiérrez, J., Peterson, W.T., Miller, C.B., 2010. Embryo biometry of three broadcast spawning euphausiid species applied to identify cross-shelf and seasonal spawning patterns along the Oregon coast. J. Plankton Res. 32(6), 739–760. https://doi.org/10.1093/plankt/fbq028. Harvey, H.R., Ju, S.-J., Kim, W.-S., Feinberg, L.R., Shaw, C.T., Peterson, W.T., 2010. The biochemical estimation of age in euphausiids, laboratory calibration and field comparisons. Deep-Sea Res. II, Krill Symposium Special Issue 57, 663–671. https://doi.org/10.1016/j.dsr2.2009.10.015. Hickey, B.M., Kudela, R.M., Nash, J.D., Bruland, K.W., Peterson, W.T., MacCready, P., Lessard, E.J., Jay, D.A., Banas, N.S., Bapista, A.M., Dever, E.P., Kosro, P.M., Kilcher, L.K., Horer- Devine, A.R., Zaron, E.D., McCabe, R.M., Peterson, J.O., Orton, P.M., Pan, J., Lohan, M.C., 2010. River influence on shelf ecosystems: introduction and synthesis. J. Geophys. Res. 115, C00B17. https://doi.org/0.1029/2009J005452. Kawaguchi, S., Peterson, W.T., 2010. Editorial, Krill biology and ecology. Deep-Sea Res. II 57, 495–496. Kudela, R.M., Horner-Devine, A.R., Banas, N.S., Hickey, B.M., Peterson, T.D., McCabe, R.M., Lessard, E., Frame, E., Bruland, K.W., Jay, D.A., Peterson, J.O., Peterson, W.T., Kosro, P.M., Palacios, S.L., Lohan, M.C., Dever, E.P., 2010. Multiple trophic levels fueled by recirculation in the Columbia River plume. Geophys. Res. Lett. 37, https://doi.org/10:1029/2010GLO44342.

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Liu, H., Peterson, W., 2010. Seasonal and interannual variations in the abundance and biomass of Neocalanus plumchrus/flemingerii in the slope waters off Oregon. Fish. Oceanogr. 19, 354–369. https://doi.org/10.1111/j.1365-2419.2010.00550.x. Moloney, C.L., Jarre, A., Kimura, S., Mackas, D.L., Maury, O., Murphy, E.J., Peterson, W.T., Runge, J.A., Tadokoro, K., 2010. Dynamics of marine ecosystems: ecological processes. In Barange, M., Field, J.G., Harris, R.P., Hofmann, E.E., Perry, I.I., Werner, F.E., Ashby, D.M., (ed.) Marine Ecosystem and Global Change. GLOBEC Synthesis Book, Chapter 7, 179–218. Oxford University Press, Oxford. Peterson, W.T., Cyr, N., 2010. The role of the Intergovernmental Oceanographic Commission in promoting cooperative research on marine ecosystems and living marine resources. Oceanography 23(3), 62–71. Peterson, W.T., Kazuaki, T., 2010. 2010 Sendai Zooplakton workshop. PICES, Press, 18(2), 24–25. Peterson, W.T., Morgan, C.A. Fisher, J.P., Casillas, E., 2010. Ocean distribution and habitat associations of yearling coho and Chinook salmon in the northern California Current. Fish. Oceanogr. 19(6), 508–525. https://doi.org/10.1111/j.1365-2419.2010.00560.x. Shaw, C.T., Feinberg, L., Peterson, W.T., 2010. Growth of Euphausia pacifica in the upwelling zone off the Oregon coast. Deep-Sea Research II, Krill Symposium Special Issue 57, 584–593. https://doi.org/10.1016/j.dsr2.2009.10.008. Tweddle, J.F., Strutton, P.G., Foley, D.G., O’Higgins, L., Wood, A.M., Scott, B., Everroad, R.C., Peterson, W.T., Cannon, D., Hunter, M., Forster Z., 2010. Relationships among upwelling, phytoplankton, blooms, and phycotoxins in coastal Oregon shellfish. Mar. Ecol. Prog. Ser. 405, 131–145. https://doi.org/10.3354/meps08497. Auth, T.D., Brodeur, R.D., Soulen, H.L., Cianelli, L., Peterson, W.T., 2011. An investigation of the response of fish larvae to decadal changes in environmental forcing factors off the Oregon coast. Fish. Oceanogr. 20(4), 314–328. https://doi.org/10.1111/j.1365- 2419.2011.00586.x. Bjorkstedt, E.P., Goericke, R., McClatchie, S., Webber, E.D., Watson, W., Lo, N., Peterson, W.T., Emmet, R., Brodeur, R., Peterson, J.O., Litz, M., Gómez-Valdés, J., Gaxiola-Castro, G.,

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Lavainegos, B.E., Chavez, F., Collins, C., Field, J., Sakuman, K., Bogard, J.S., Schwing, F.B., Warzybok, P., Bradley, R., Jahncke, J., Campbell, G.S., Hildersbrand, J., Sydeman, W.J., Thompson, S.A., Largier, J.L., Halle, C., Kim, S.Y., Abell, J., 2011. State of the California Current 2010-2011: Regional variable responses to a strong (but fleeting?) La Niña. Calif. Coop. Oceanic Fish. Invest. Rep. 52, 36–68. Bi, H., Peterson, W.T., Strub, P.T., 2011. Transport and coastal zooplankton communities in the northern California Current system, Geophys. Res. Lett. 38, L12607. https://doi.org/10.1029/2011GL047927. Bi, H., Feinberg, L.R., Shaw, C.T., Peterson, W.T., 2011. Estimated development times for stage-structured marine organisms are biased if based only on survivors. J. Plankton Res. 33(5), 751–762, https://doi.org/10.1093/plankt/fbq138. Bi, H., Peterson, W.T., Lamb, J., Casillas, E., 2011. Copepods and salmon: characterizing the spatial distribution of juvenile salmon along the Washington and Oregon coast, USA. Fish. Oceanogr. 20, 125–138. https://doi.org/10.1111/j.1365-2419.2011.00573.x. Du, X., Peterson, W.T., McCulloch, A., Liu, G., 2011. An unusual bloom of the dinoflagellate Akashiwo sanguinea off the central Oregon USA coast in autumn 2009. Harmful Algae 10, 784–793, https://doi.org/10.1016/j.hal.2011.06.011. Keister, J.E., Di Lorenzo, E., Morgan, C.A., Combes, V., Peterson, W.T., 2011. Copepod species composition is linked to ocean transport in the northern California Current. Global Change Biol. 17(7), 2498–2511, https://doi.org/10.1111/j.1365–2486.2010.02383.x. Ruzicka, J.J., Wainwright, T.C., Peterson, W.T., 2011. A simple plankton model for the Oregon upwelling ecosystem: Sensitivity and validation against time–series ocean data. Ecol. Modeling 222, 1222–1235. https://doi.org/10.1016/j.ecolmodel.2011.01.001. Sydeman, W.J., Thompson, S.A., Field, J.C., Peterson, W.T., Tanasichuk, R.W., Freeland, H.J., Bograd, S.J., Rykaczewski, R.R., 2011. Does positioning of the North Pacific Current affect downstream ecosystem productivity? Geophys. Res. Lett., 38, L12606, https://doi.org/10.1029/2011GL047212.

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Ruzicka, J.J., Wainwright, T.C., Peterson, W.T., 2011. A model-based meso-zooplankton production index and its relation to the ocean survival of juvenile coho (Oncorhynchus kisutch). Fish. Oceanogr. 20(6), 544–559. https://doi.org/10.1111/j.1365- 2419.2011.00601.x. Bjorkstedt, E.P., Goericke, R., McClatchie, S., Weber, E., Watson, W., Lo, N., Peterson, W.T., Brodeur, R.D., Auth, T., Fisher, J., Morgan, C.A., Peterson, J., Largier, J., Bograd, S.J., Durazo, R., Gaxiola-Castro, G., Lavaniegos, B.E., Chavez, F., Collins, C., Hannah, B., Field, J., Sakuma, K., Satterthwaite, W., O’Farrell, M., Hayes, S., Harding, J., Sydeman, W.J., Thompson, S.A., Warzybok, P., Bradley, R., Jahncke, J., Golightly, R.T., Schneider, S.R., Suryan, R.M., Gladics, A.J., Horton, C.A., Kim, S.Y., Melin, S.R., Delong, R.L., Abell, J., 2012. State of the California Current 2011-2012: Ecosystems respond to local forcing as La Niña wavers and wanes. Calif. Coop. Oceanic Fish. Invest. Rep. 53, 41–78. Bi, H., Peterson, W.T., Peterson, J.O., Fisher, J., 2012. A comparative analysis of coastal and shelf-slope zooplankton communities in the northern California Current system, synchronized response to large scale forcing? Limnol. Oceanogr. 57(5), 1467–1478. https://doi.org/10.4319/lo.2012.57.5.1467. Francis, T., Scheuerell, M., Brodeur, R., Levin, P., Ruzicka, J., Tolimieri, N., Peterson, W.T., 2012. Climate shifts the interaction web of a marine plankton community. Global Change Biol. 18, 2498–2508. https://doi.org/10.1111/j.1365-2486.2012.02702.x. Johannson, M., Duda, E., Sremba, A., Banks, M., Peterson, W.T., 2012. Assessing population- level variation in the mitochondrial genome of Euphausia superba using 454 next- generation sequencing. Mol. Biol. Rep. https://doi.org/10.1007/s11033-011-1385-y. Johannson, M.L., Sremba, A.L., Feinberg, L.R., Banks, M.A., Peterson, W.T., 2012. The mitochondrial genomes of Euphausia pacifica and Thysanoessa raschi sequenced using 454 next-generation sequencing with a phylogenetic analysis of their position in the Malacostracan family tree. Mol. Biol. Rep. 39, 9009–9021. https://doi.org/10.1007/s11033-012-1772-z.

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Hao, Y., Bi, H., Burke, B., Lamb, J., Peterson, W.T., 2012. Spatial variations in the distribution of yearling spring Chinook off Washington and Oregon using COZIGAM analysis. Mar. Ecol. Prog. Ser. 465, 253–265. https://doi.org/10.3354/meps09909. Rupp, D.E., Wainwright, T.C., Lawson, P.W., Peterson, W.T., 2012. Marine environment- based forecasting of Oregon coastal natural Coho salmon (Oncorhynchus kisutch) adult recruitment. Fish. Oceanogr. 21(1), 1–19. https://doi.org/10.1111/j.1365- 2419.2011.00605.x. Takahashi, M., Checkley, D., Brodeur, R., Peterson, W.T., 2012. Responses in growth rate of larval northern anchovy to anomalous upwelling in the northern California Current. Fish. Oceanogr. 21, 393–404. https://doi.org/10.1111/j.1365-2419.2012.00633.x. Thompson, S.A., Sydeman, W.J., Santora, J.A., Black, B.A., Suryan, R.M., Calambokidis, J., Peterson, W.T., Bograd, S.J., 2012. Effects of winter and summer upwelling on top predators, A path analytical approach on “bottom-up” trophic mechanisms. Prog. Oceanogr. 101, 106–120. https://doi.org/10.1016/j.pocean.2012.02.001. Thompson, S.A., Sydeman, W.J., Santora, J.A., Black, B.A., Suryan, R.M., Calambokidis, Peterson, W.T., Bograd, S.J., 2012. Linking predators to seasonality of upwelling: using food web indicators and path analysis to infer trophic connections. Prog. Oceanogr. 101, 106–120. https://doi.org/10.1016/j.pocean.2012.02.001. Tomaro, L., Teel, D.J, Peterson, W.T., Miller, J.A., 2012. When is bigger better? Early marine residence of middle and upper Columbia River spring Chinook Salmon. Mar. Ecol. Prog., Ser. 452, 237–252. https://doi.org/10.3354meps09620. Batchelder, H.P., Daly, K.L., Davis, C.S., Ji, R., Ohman, M.D., Peterson, W.T., Runge, J., 2013. Climate impacts on zooplankton population dynamics in coastal marine systems. Oceanography 26(4), 34–51. https://doi.10.5670/oceanog.2013.74. Burke, B.J., Peterson, W.T., Beckman, B.R., Morgan, C.A., Daly, E.A., Litz, M., 2013. Multivariate models of adult Pacific salmon returns. PlosOne 8(1), e54134. https://doi.org/10.1371/journal.pone.0054134. Daly, E., Auth, T., Brodeur, R., Peterson, W.T., 2013. Winter ichthyoplankton biomass as a predictor of early summer prey fields and survival of juvenile salmon in the northern

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California Current. Mar. Ecol. Prog. Ser. 484, 203–217. https://doi.org/10.3354/meps10320. Di Lorenzo, E., Combes, V., Keister, J.E., Strub, P.T., Thomas, A.C., Franks, P.J.S., Ohman, M.D., Furtado, J.C., Bracco, A., Bograd, S.J., Peterson, W.T., Schwing, F.B., Chiba, S., Tabushi, B., Hormazabal, S., Parada, C., 2013. Synthesis of Pacific Ocean climate and ecosystem dynamics. Oceanography 26(4), 68–81. https://www.jstor.org/stable/24862098. Feinberg, L.R., Shaw, C.T., Peterson, W.T., Dé cima, M.R., Okazaki, Y., Ju, S., 2013. Euphausia pacifica brood size: a North Pacific synthesis. J. Plankton Res. 35, 1192–1206. https://doi.org/10.1093/plankt/fbt064. Peterson, J.O., Morgan, C.A., Peterson, W.T., Di Lorenzo, E., 2013. Seasonal and interannual variation in the extent of hypoxia in the northern California Current from 1998–2012. Limnol. Oceanogr. 58(6), 2013, 2279–2292. https://doi.org/10.4319/lo.2013.58.6.2279. Shaw, C.T., Peterson, W.T., Song, S., 2013. Report of Working Group 23 on Comparative Ecology of Krill in Coastal and Oceanic Waters around the Pacific Rim. PICES Scientific Report No. 43, 100 p. Sydeman, W.J., Thompson, S.A., Garcia-Reyes, M., Kahru, M., Peterson, W.T., Largier, J.L., 2013. Multivariate ocean-climate indicators (MOCI) for the central California Current: environmental change, 1990-2010. Prog. Oceanogr. 120, 352–369. https://doi.org/10.1016/j.pocean.2013.10.017. Wells, B. Schroeder, I.D., Santora, J.A., Hazen, E.L., Bograd, S.J., Bjorkstedt, E.P., Loeb, V.J., McClatchie, S., Weber, E., Watson, W., Thompson, A.R., Peterson, W.T., Brodeur, R.D., Harding, J., Hayes, S., Mantua, N., Sydeman, W.J., Loosekoot, M., Thompson, S.A., Largier, J., Kim, S.Y., Chavez, F., Barceló, C., Warzybok, P., Bradley, R., Jahncke, J., Goericke, R., Campbell, G.S., Hilderbrand, J.A., Melin, S.R., Delong, R.L., Gómez-Valdes, J., Lavaniegos, B.E., Gaxiola-Castro, G., Golightly, R.T., Schneider, S.R., Lo, N., Suryan, R.M., Gladics, A.J., Horton, C.A., Fisher, J., Morgan, C.A., Peterson, J., Daly, E.A., Auth, T., Abell, J., 2013. State of the California Current 2012-13, No such thing as an ‘average’ year. Calif. Coop. Oceanic Fish. Invest. Rep. 54, 37–71.

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Bednaršek, N., Feely, R.A., Reum, J.C.P., Alin, S., Hales, B., Peterson, W.T., 2014. Impact of ocean acidification on Limacina helicina shell dissolution in the California Current Ecosystem. Proc. Roy. Soc London B. 281, 20140123. https://doi.org/10.1098/rspb.2014.0123. Black, B.A., Sydeman, W.J., Frank, D.C., Griffin, D., Stahle, D.W., García-Reyes, M., Rykaczewski, R.R., Bograd, S.J., Peterson, W.T., 2014. Six centuries of variability and extremes in a coupled marine-terrestrial ecosystem. Science 345, 1498–1502. https://doi.org/10.1126/science.1253209. Du, X., Peterson, W.T., 2014. Seasonal cycle of phytoplankton community composition in the coastal upwelling system off central Oregon in 2009. Estuar. Coast. 37, 299–311. https://doi.org/10.1007/s12237-013-9679-z. Du, X., Peterson, W.T., 2014. Feeding rates of adult Euphausia pacifica on natural microplankton assemblages in the coastal upwelling zone off Oregon, USA, 2010. J. Plankt. Res. 36(4), 1031–1046. 1031–1046, https://doi.org/10.1093/plankt/fbu027. Fisher, J., Peterson, W.T., Morgan, C.A., 2014. Does larval advection and survival explain latitudinal differences in recruitment across upwelling regimes? Mar. Ecol. Prog. Ser. 503, 123–137. https://doi.org/10.3354/meps10732. Gladics, A., Suryan, R., Parrish, J., Horton, C., Daly, E., Peterson, W.T., 2014. Environmental drivers and reproductive consequences of highly variable diets of a marine predator. J. Mar. Syst. http://dx.doi.org/10.1016/j.jmarsys.2014.06.015. Losee, J.P., Miller, J.A., Peterson, W.T., Teel, D.J., Jacobson, K.C., 2014. Influence of ocean ecosystem variability on trophic interactions, parasites and survival of juvenile coho and Chinook salmon. Can J. Fish. Aquat. Sci. 71, 1747–1757. https://doi.org/10.1139/cjfas-2014-0043. McClatchie, S., Duffy-Anderson, J., Field, J.C., Goericke, R., Griffith, D., Hanisko, D.S., Hare, J.A., Lyczkowski-Shultz, J., Peterson, W.T., Watson, W., Weber, E.D., Zapfe, G., 2014. Long time series in US fisheries oceanography. Oceanography 27(4):48–67. http://dx.doi.org/10.5670/oceanog.2014.86.

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Miller, J.A., Teel, D.J., Peterson, W.T., Baptista, A., 2014. Assessing the relative importance of local and regional processes on the survival of a threatened salmon population. PlosONE. 9(6), 1–13, e9814. https://doi.org/10.1371/journal.pone.0099814. Peterson, W.T., Fisher, J.L., Peterson, J.O., Morgan, C.A., Burke, B.J., Fresh, K.L., 2014. Applied fisheries oceanography: Ecosystem indicators of ocean conditions inform fisheries management in the California Current. Oceanography 27(4):80–89, http://dx.doi.org/10.5670/oceanog.2014.88. White, A., Katie, S., Watkins-Brandt, S., McKibben, M., Wood, A.M., Hunter, M., Forster, Z., Du, X., Peterson, W.T., 2014. Large-scale bloom of Akashiwo sanguinea in the Northern California Current System in 2009. Harmful Algae 37, 38–46. https://doi.org/10.1016/j.hal.2014.05.004. Alin, S.R., Brainard, R.E., Price, N.N., Newton, J.A., Cohen, A., Peterson, W.T., DeCarlo, E.H., Shadwicik, E.H., Noakes, S., Bednaršek, N., 2015. Characterizing the natural system: Toward sustained, integrated coastal ocean acidification observing networks to facilitate resource management and decision support. Oceanography 28(2), 92–107. http://dx.doi.org/10.5670/oceanog.2015.34. Bjorkstedt, E.P., Peterson, W.T., 2015. Zooplankton data from high-frequency coastal transects: enriching the contributions of ocean observing systems to ecosystem-based management in the northern California Current. p. 120-142 in: Liu, Y. Kerkering H., Weisberg, R.H. (eds.) Coastal Ocean Observing Systems: Advances and Syntheses. Elsevier. Du, X., Peterson, W.T., O’Higgins, L., 2015. Interannual variations in phytoplankton community structure in the northern California current during the upwelling seasons (2001–2010). Mar. Ecol. Prog. Ser. 519, 75–87. https://doi.org/10.3354/meps11097. Fisher, J.L., Peterson, W.T., Rykaczewski, R.R., 2015. The impact of El Niño events on the pelagic food chain in the northern California Current. Global Change Biol. 21, 4401– 4414. https://doi.org/10.1111/gcb.13054. Liu, H., Bi, H., Peterson, W.T., 2015. Large-scale forcing of environmental conditions on the Neocalanus plumchrus and cristatus populations in the northern California Current

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system. Prog. Oceanogr. 134, 404–412. https://doi.org/10.1016/j.pocean.2015.04.001. Peterson, W.T. 2015. A review of “Regional Fisheries Oceanography of the California Current System: The CalCOFI Program”. Trans. Am. Fish. Soc. 144(2), 443–444. https://doi.org/10.1080/00028487.2015.1011469. Malick, M., Cox, S., Peterman, R., Wainwright, T., Peterson, W.T., 2015. Accounting for multiple pathways in the connections among climate variability, ocean processes, and coho salmon recruitment in the Northern California Current. Can. J. Fish. Aquat. Sci. 72(10), 1552–1564. https://doi.org/10.1139/cjfas-2014-0509. McKibben, S.M., K. S. Watkins-Brandt, Wood, A.M., Hunter, M., Hunter, Z., Hopkins, A., Du, X., Eberhart, B.L., Peterson, W.T., White, A.E., 2015. Monitoring Oregon Coastal Harmful Algae: Observations and implications of a harmful algal bloom-monitoring project. Harmful Algae, 50:32-44. https://doi.org/10.1016/j.hal.2015.10.004. Peterson, W.T., Robert, M., Bond, N., 2015. The warm blob – Conditions in the northeastern Pacific Ocean, PICES Press 23(1), 36–38. Peterson, W.T., Robert, M., Bond, N., 2015. The warm Blob continues to dominate the ecosystem of the northern California Current PICES Press 23(2), 44–46. Peterson, W.T., Robert, M., Bond, N., 2015. The Blob: Going, going, gone. PICES Press 24(1), 46–48. Peterson, W.T., Du, X., 2015. Egg production of Calanus marshallae in relation to phytoplankton abundance and species composition in the Oregon upwelling zone. Prog. Oceanogr. 138, 32–44. https://doi.org/10.1016/j.pocean.2015.09.007. Tucker, S., Thiess, M.E., Morris, J.F.T., Mackas, D., Candy, J.R., Beacham, T.D., Teel, D., Peterson, W.T., Trudel, M., 2015. Ocean distribution and consequent factors influencing marine survival of endangered Redfish Lake sockeye salmon. Trans. Am. Fish. Soc. 144, 107–121. https://doi.org/10.1080/00028487.2014.968292. Yamada, S.B., Peterson, W.T., Kosro, M., 2015. Biological and physical ocean indicators predict the success of an invasive crab, Carcinus maenas, in the northern California Current. Mar. Ecol. Prog. Ser. 537, 175–189. https://doi.org/10.3354/meps11431.

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Du, X., Peterson, W.T., Fisher, J., Hunter, M., Peterson, J.O., 2016. Initiation and development of a toxic and persistent Pseudo-nitzschia bloom off the Oregon coast in spring/summer 2015. PLoS ONE 11(10), e0163977. https://doi.org/10.1371/journal.pone.0163977. MacClatchie, S. Goericke, R., Leising, A., Auth, T., Bjorkstedt, E.P., Rbertson, R.R., Brodeur, R.D., Du, X., Daly, E.A., Morgan, C.A., Chavez, F., Debich, A.J., Hilderbrand, J.A., Field, J., Sakuma, K., Jacox, M.G., Kahru, M., Kudela, R., Anderson, C., Lavaniegos, B.E., Gómez- Valdes, J., Jiménez-Rosemberg, P.A., McCbe, R., Melin, S.R., Ohman, M.D., Sala, L.M., Peterson, W.T., Fisher, J., Schroeder, I.D., Bograd, S.J., Hazen, E.L., Schneider, S.R., Golightly, R.T., Suryan, R.M., Gladics, Loredo, S., Por Quesz, J.M., Thompson, A.R., Webber, E.D., Watson, W., Trainer, V., Warzybok, P., Bradley, R., Jahncke, J., 2016. State of the California Current 2015-16, comparison with the 1997-98 El Niño. Calif. Coop. Oceanic Fish. Invest. Rep. 57, 1–57. McGibben, M., Peterson, W.T., Wood, A.M., Trainer, V.L., Hunter, M.V., White, A.E., 2016. Climatic regulation of the neurotoxin domoic acid. Proc. Nat. Acad. Sci. Proc. Natl Acad. Sci. www.pnas.org/cgi/doi/10.1073/pnas.1606798114. Riquelme, R., Silva, J., Escribano, R., Peterson, W., Schnieder, W., 2016. Growth of the Humboldt Current krill in the upwelling zone off central Chile. J. Mar. Sys. 163, 1–11. https://doi.org/10.1016/j.jmarsys.2016.06.001. Siedlecki, S.A., Kaplan, I.C., Herman, A., Nguyen, T., Bond, N.A., Williams, G.D., Newton, J.A., Peterson, W.T., Alin, S.R., Feely, R.A., 2016. Development of a seasonal forecast system for northern California Current ocean conditions. Nature Scientific Reports, 6, 27203. https://doi.org/10.1038/srep27203. Anderson, C., Siedlecki, S., Rousseaux, C., Powell, B., Peterson, W.T., Edwards, C., 2017. Impact of ENSO on biogeochemistry and lower trophic levels in the California Current system. U.S.CLIVAR Variations, 15(1), 27–32. Chao, Y., Farrara, J.D., Bjorkstedt, E., Chai, F., Chavez, F., Rudnick, D.L., Enright, W., Fisher, J.L., Peterson, W.T., Welch, G.F., Davis, C.O., Dugdale, R.C., Wilkerson, F.P., Zhang, H., Zhang, Y., Ateljevich, E., 2017. The origins of the anomalous warming in the California

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coastal ocean and San Francisco Bay during 2014–2016. J. Geophys. Res. Oceans, 122(9), 7537–7557. https://doi.org/10.1002/2017JC013120. Harvey, B.J., Johnson, S.B., Fisher, J.L., Peterson, W.T., Vrijenhoek, R.C., 2017. Comparison of morphological and next generation DNA sequencing methods for assessing zooplankton assemblages. J. Exp. Mar. Biol. Ecol. 28(487), 113–126. https://doi.org/10.1016/j.jembe.2016.12.002. Kobari, T., Miyake, S., Peterson, W.T., Peterson, J., Shaw. T., 2017. Nucleic acid ratio as a proxy for starvation of coastal and pelagic copepods in the North Pacific Ocean. Plankton Benthos Res. 12(1), 25–33. https://doi.org/10.3800/pbr.12.25. Miller, J. A., Peterson, W.T., Copeman, L.A., Du, X., Morgan, C.A., Litz, M.N., 2017. Temporal variation in the biochemical ecology of lower trophic levels in the Northern California Curren. Prog. Oceanogr. 155, 1–12. https://doi.org/10.1016/j.pocean.2017.05.003. Peterson, W.T., Fisher, J.L., Strub, P.T., Du, X., Risien, C., Peterson, J., Shaw, C.T. 2017. The pelagic ecosystem in the Northern California Current off Oregon during the 2014– 2016 warm anomalies within the context of the past 20 years. J. Geophys. Res. Oceans, 122(9), 7267–7290. https://doi.org/10.1002/2017JC012952. Wells, B. K., Schroeder, I.D., Bograd, S.J., Hazen, E.L., Jacox, M., Leising, A., Mantua, N.J., Santora, J.A., Fisher, J.L., Peterson, W.T., Bjorkstedt, E.P., Robertson, R.R., Chavez, F.P., Goericke, R. Kudela, R., Anderson, C.R., Lavaniegos, B.E., Gomez-Valdes, J., Brodeur, R.D., Daly, E.A., Morgan, C.A., Auth, T.D., Field, J.C., Sakuma, K., McClatchie, S., Thompson, A.R., Weber, E.D., Watson, W., Suryan, R., Parrish, J.K., Dolliver, J., Loredo, S., Porquez, J.M., Zamon, J.E., Schneider, S.R., Golightly, R., Warzybok, P., Bradley, R.W., Jahncke, J., Sydeman, W.J., Melin, S.R., Hildebrand, J., Debich, A.J., Thayre, B., 2017. State of the California current 2016-17: still anything but "Normal" in the north. Calif. Coop. Ocean. Fish. Invest. Rep. 58, 1–55. Du, X., Peterson, W.T., 2018. Phytoplankton community structure in 2011-2013 compared to the extratropical warming events of 2014-2015. Geophys. Res. Lett. 45(3), 1534– 1540. https://doi.org/10.1002/2017GL076199.

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Harvey, C., Garfield, N., Williams, G., Tolimieri, N., Schroeder, I., Hazen, E., Andrews, K., Barnas, K., Bograd, S., Brodeur, R., Burke, B., Cope, J., deWitt, L., Field, J., Fisher, J., Good, T., Greene, C., Holland, D., Hunsicker, M., Jacox, M., Kasperski, S., Kim, S., Leising, A. , Melin, S., Morgan, C.A., Muhling, B., Munsch, S., Norman, K., Peterson, W.T., Poe, M., Samhouri, J., Sydeman, W., Thayer, J., Thompson, A., Tommasi, D., Varney, A., Wells, B., Williams, T., Zamon, J., Lawson, D., Anderson, S., Gao, J., Litzow, M., McClatchie, S., Ward, E., Zador, S., 2018. Ecosystem status report of the California Current for 2018: A Summary of ecosystem indicators compiled by the California Current Integrated Ecosystem Assessment Team (CCEIA). U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-145. Hunsicker, M.E., Bograd, S.J., Crozier, L.G., McClatchie, S., Morris J.A. Jr., Peterson, W.T., Price, C., 2018. Climate change impacts on fisheries and aquaculture of the United States: California Current. pp 165–176 in Phillips, B.F., Pérez-Ramírez, M. (Eds.) Climate Change Impacts on Fisheries and Aquaculture. Wiley Blackwell. Jones, T., Parrish, J K., Peterson, W.T., Bjorkstedt, E.P., Bond, N.A., Ballance, L.T., Bowes, V., Hipfner, J.M., Burguess, H.K., Dolliver, J.E., Lindquist, K., Lindsey, J., Nevins, H.M., Robertson, R.R., Roletto, J., Wilson, L., Joyce, T., Harvey, J., 2018. Massive mortality of a planktivorous seabird in response to a marine heatwave. Geophys. Res. Lett. 45(7), 3193–3202. https://doi.org/10.1002/2017GL076164. Sato, M., Barth, J.A., Benoit-Bird, K.J., Pierce, S.D., Cowles, T.J., Brodeur, R.D., Peterson, W.T., 2018. Upwelling front as a boundary for planktivorous fish distributions. Mar. Ecol. Prog. Ser., 595, 171–186. https://doi.org/10.3354/meps12553. Du, X., Peterson W.T., 2019. Spatial links of phytoplankton abundance and community structure between shelf and slope waters off Oregon, USA. J. Plankt. Res., https://doi.org/10.1093/plankt/fbz047.

Manuscripts submitted

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Gómez-Gutiérrez, J., Peterson, W.T., Egg sinking velocities and cross-shelf vertical distribution of early ontogenetic stages of two euphausiid species off the Oregon coast. Prog. Oceanogr. Submitted (this issue). Dumelle, M.J., Lamb, J.F., Jacobson, K.C., Hunsicker, M.E., Morgan, C.A., Burke, B.J., Peterson, W.T., Characterizing spatial coherence of copepods in the Northern California Current. Prog. Oceanogr. Submitted (this issue). Fisher, J., Menkel, J., Copeman, L, Shaw, C.T., Feinberg, L., Peterson, W.T., Comparison of condition metrics and lipid content between Euphausia pacifica and Thysanoessa spinifera in the northern California Current, USA. Submitted (this issue). Zeman, S.M., Peterson W.T. Fisher, J.L., Peterson, J.O., Characterizing Calanus marshallae and Calanus pacificus egg production in the northern California Current during 16-year time series, 2001-2016. Prog. Oceanogr. Submitted (this issue).

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