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Atlas of the Copepods (Class Crustacea: Subclass Copepoda: Orders Calanoida, Cyclopoida, and Harpacticoida)
Taxonomic Atlas of the Copepods (Class Crustacea: Subclass Copepoda: Orders Calanoida, Cyclopoida, and Harpacticoida) Recorded at the Old Woman Creek National Estuarine Research Reserve and State Nature Preserve, Ohio by Jakob A. Boehler and Kenneth A. Krieger National Center for Water Quality Research Heidelberg University Tiffin, Ohio, USA 44883 August 2012 Atlas of the Copepods, (Class Crustacea: Subclass Copepoda) Recorded at the Old Woman Creek National Estuarine Research Reserve and State Nature Preserve, Ohio Acknowledgments The authors are grateful for the funding for this project provided by Dr. David Klarer, Old Woman Creek National Estuarine Research Reserve. We appreciate the critical reviews of a draft of this atlas provided by David Klarer and Dr. Janet Reid. This work was funded under contract to Heidelberg University by the Ohio Department of Natural Resources. This publication was supported in part by Grant Number H50/CCH524266 from the Centers for Disease Control and Prevention. Its contents are solely the responsibility of the authors and do not necessarily represent the official views of Centers for Disease Control and Prevention. The Old Woman Creek National Estuarine Research Reserve in Ohio is part of the National Estuarine Research Reserve System (NERRS), established by Section 315 of the Coastal Zone Management Act, as amended. Additional information about the system can be obtained from the Estuarine Reserves Division, Office of Ocean and Coastal Resource Management, National Oceanic and Atmospheric Administration, U.S. Department of Commerce, 1305 East West Highway – N/ORM5, Silver Spring, MD 20910. Financial support for this publication was provided by a grant under the Federal Coastal Zone Management Act, administered by the Office of Ocean and Coastal Resource Management, National Oceanic and Atmospheric Administration, Silver Spring, MD. -
The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
Bioluminescence of the Poecilostomatoid Copepod Oncaea Conifera
l MARINE ECOLOGY PROGRESS SERIES Published April 22 Mar. Ecol. Prog. Ser. Bioluminescence of the poecilostomatoid copepod Oncaea conifera Peter J. Herring1, M. I. ~atz~,N. J. ~annister~,E. A. widder4 ' Institute of Oceanographic Sciences, Deacon Laboratory, Brook Road Wormley, Surrey GU8 5UB, United Kingdom 'Marine Biology Research Division 0202, Scripps Institution of Oceanography, La Jolla, California 92093, USA School of Biological Sciences, University of Birmingham, Edgbaston. Birmingham B15 2TT, United Kingdom Harbor Branch Oceanographic Institution, 5600 Old Dixie Highway, Fort Pierce, Florida 34946, USA ABSTRACT: The small poecilostomatoid copepod Oncaea conifera Giesbrecht bears a large number of epidermal luminous glands, distributed primarily over the dorsal cephalosome and urosome. Bio- luminescence is produced in the form of short (80 to 200 ms duration) flashes from withrn each gland and there IS no visible secretory component. Nevertheless each gland opens to the exterior by a simple valved pore. Intact copepods can produce several hundred flashes before the luminescent system is exhausted. Individual flashes had a maximum measured flux of 7.5 X 10" quanta s ', and the flash rate follows the stimulus frequency up to 30 S" Video observations show that ind~vidualglands flash repeatedly and the flash propagates along their length. The gland gross morphology is highly variable although each gland appears to be unicellular. The cytoplasm contains an extensive endoplasmic reticulum. 0. conifera swims at Reynolds numbers of 10 to 50, and is normally associated with surfaces (e.g. marine snow). We suggest that the unique anatomical and physiological characteristics of the luminescent system arc related to the specialised ecological niche occupied by this species. -
Centropages (Crustacea) Collected from Shimizu Port, Middle Japan: Introduced Or Not?
Plankton Biol. Ecol. 52 (2): 92-99, 2005 plankton biology & ecology €■ The Planklon Society of Japan 21)05 A new species of the calanoid copepod genus Centropages (Crustacea) collected from Shimizu Port, Middle Japan: Introduced or not? Susumu Ohtsuka1, Hiroshi Itoh2 & Takeshi Mizushima3 ' Takeham Marine Science Station, Setouchi Field Science Center. Graduate School of Biosphere Science, Hiroshima University, 5-8-1 Minaio-machi, Takehara 725-0024, Japan 'Suidosha Co. Ltd., 8-11-11 Ikuta, Tama-Ku, Kawasaki 214-0038, Japan 3 School ofMarine Science and Technology. Tokai University, 3-20-1 Orido, Shimizu-Ku, Shizuoka 424-8610, Japan Received 12 March 2005; Accepted 13 May 2005 Abstract: A new species of the planktonic calanoid copepod Centropages is described from Shimizu Port, Middle Japan. The new species is assigned to the alcocki group that is distributed in the tropi cal/subtropical Indo-West Pacific regions. The sporadic occurrence of the new species alludes to the possibility that the new species was introduced to Japan via ballast water. Key words: Centropages maigo, alien species, Calanoida, ballast water, Shimizu Port coastal species are very abundant and play important roles Introduction as food for fish (Brodsky 1950, Chen & Zhang 1965). In Alien marine benthic species are an increasingly serious Japanese waters the following ten species of the genus have problem all over the world and are now being joined by hitherto been recorded: C. abdominalis Sato, 1913; C. planktonic species. On the Pacific coast of the U.S.A. and bradyi Wheeler, 1899; C. calaninus (Dana, 1849); C. elon Chile, many planktonic copepods have been introduced gates Giesbrecht, 1896; C. -
Zootaxa,Crustacean Classification
Zootaxa 1668: 313–325 (2007) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2007 · Magnolia Press ISSN 1175-5334 (online edition) Crustacean classification: on-going controversies and unresolved problems* GEOFF A. BOXSHALL Department of Zoology, The Natural History Museum, Cromwell Road, London SW7 5BD, United Kingdom E-mail: [email protected] *In: Zhang, Z.-Q. & Shear, W.A. (Eds) (2007) Linnaeus Tercentenary: Progress in Invertebrate Taxonomy. Zootaxa, 1668, 1–766. Table of contents Abstract . 313 Introduction . 313 Treatment of parasitic Crustacea . 315 Affinities of the Remipedia . 316 Validity of the Entomostraca . 318 Exopodites and epipodites . 319 Using of larval characters in estimating phylogenetic relationships . 320 Fossils and the crustacean stem lineage . 321 Acknowledgements . 322 References . 322 Abstract The journey from Linnaeus’s original treatment to modern crustacean systematics is briefly characterised. Progress in our understanding of phylogenetic relationships within the Crustacea is linked to continuing discoveries of new taxa, to advances in theory and to improvements in methodology. Six themes are discussed that serve to illustrate some of the major on-going controversies and unresolved problems in the field as well as to illustrate changes that have taken place since the time of Linnaeus. These themes are: 1. the treatment of parasitic Crustacea, 2. the affinities of the Remipedia, 3. the validity of the Entomostraca, 4. exopodites and epipodites, 5. using larval characters in estimating phylogenetic rela- tionships, and 6. fossils and the crustacean stem-lineage. It is concluded that the development of the stem lineage concept for the Crustacea has been dominated by consideration of taxa known only from larval or immature stages. -
Additions to and Revisions of the Amphipod (Crustacea: Amphipoda) Fauna of South Africa, with a List of Currently Known Species from the Region
Additions to and revisions of the amphipod (Crustacea: Amphipoda) fauna of South Africa, with a list of currently known species from the region Rebecca Milne Department of Biological Sciences & Marine Research Institute, University of CapeTown, Rondebosch, 7700 South Africa & Charles L. Griffiths* Department of Biological Sciences & Marine Research Institute, University of CapeTown, Rondebosch, 7700 South Africa E-mail: [email protected] (with 13 figures) Received 25 June 2013. Accepted 23 August 2013 Three species of marine Amphipoda, Peramphithoe africana, Varohios serratus and Ceradocus isimangaliso, are described as new to science and an additional 13 species are recorded from South Africa for the first time. Twelve of these new records originate from collecting expeditions to Sodwana Bay in northern KwaZulu-Natal, while one is an introduced species newly recorded from Simon’s Town Harbour. In addition, we collate all additions and revisions to the regional amphipod fauna that have taken place since the last major monographs of each group and produce a comprehensive, updated faunal list for the region. A total of 483 amphipod species are currently recognized from continental South Africa and its Exclusive Economic Zone . Of these, 35 are restricted to freshwater habitats, seven are terrestrial forms, and the remainder either marine or estuarine. The fauna includes 117 members of the suborder Corophiidea, 260 of the suborder Gammaridea, 105 of the suborder Hyperiidea and a single described representative of the suborder Ingolfiellidea. -
The Plankton Lifeform Extraction Tool: a Digital Tool to Increase The
Discussions https://doi.org/10.5194/essd-2021-171 Earth System Preprint. Discussion started: 21 July 2021 Science c Author(s) 2021. CC BY 4.0 License. Open Access Open Data The Plankton Lifeform Extraction Tool: A digital tool to increase the discoverability and usability of plankton time-series data Clare Ostle1*, Kevin Paxman1, Carolyn A. Graves2, Mathew Arnold1, Felipe Artigas3, Angus Atkinson4, Anaïs Aubert5, Malcolm Baptie6, Beth Bear7, Jacob Bedford8, Michael Best9, Eileen 5 Bresnan10, Rachel Brittain1, Derek Broughton1, Alexandre Budria5,11, Kathryn Cook12, Michelle Devlin7, George Graham1, Nick Halliday1, Pierre Hélaouët1, Marie Johansen13, David G. Johns1, Dan Lear1, Margarita Machairopoulou10, April McKinney14, Adam Mellor14, Alex Milligan7, Sophie Pitois7, Isabelle Rombouts5, Cordula Scherer15, Paul Tett16, Claire Widdicombe4, and Abigail McQuatters-Gollop8 1 10 The Marine Biological Association (MBA), The Laboratory, Citadel Hill, Plymouth, PL1 2PB, UK. 2 Centre for Environment Fisheries and Aquacu∑lture Science (Cefas), Weymouth, UK. 3 Université du Littoral Côte d’Opale, Université de Lille, CNRS UMR 8187 LOG, Laboratoire d’Océanologie et de Géosciences, Wimereux, France. 4 Plymouth Marine Laboratory, Prospect Place, Plymouth, PL1 3DH, UK. 5 15 Muséum National d’Histoire Naturelle (MNHN), CRESCO, 38 UMS Patrinat, Dinard, France. 6 Scottish Environment Protection Agency, Angus Smith Building, Maxim 6, Parklands Avenue, Eurocentral, Holytown, North Lanarkshire ML1 4WQ, UK. 7 Centre for Environment Fisheries and Aquaculture Science (Cefas), Lowestoft, UK. 8 Marine Conservation Research Group, University of Plymouth, Drake Circus, Plymouth, PL4 8AA, UK. 9 20 The Environment Agency, Kingfisher House, Goldhay Way, Peterborough, PE4 6HL, UK. 10 Marine Scotland Science, Marine Laboratory, 375 Victoria Road, Aberdeen, AB11 9DB, UK. -
Diversity and Life-Cycle Analysis of Pacific Ocean Zooplankton by Video Microscopy and DNA Barcoding: Crustacea
Journal of Aquaculture & Marine Biology Research Article Open Access Diversity and life-cycle analysis of Pacific Ocean zooplankton by video microscopy and DNA barcoding: Crustacea Abstract Volume 10 Issue 3 - 2021 Determining the DNA sequencing of a small element in the mitochondrial DNA (DNA Peter Bryant,1 Timothy Arehart2 barcoding) makes it possible to easily identify individuals of different larval stages of 1Department of Developmental and Cell Biology, University of marine crustaceans without the need for laboratory rearing. It can also be used to construct California, USA taxonomic trees, although it is not yet clear to what extent this barcode-based taxonomy 2Crystal Cove Conservancy, Newport Coast, CA, USA reflects more traditional morphological or molecular taxonomy. Collections of zooplankton were made using conventional plankton nets in Newport Bay and the Pacific Ocean near Correspondence: Peter Bryant, Department of Newport Beach, California (Lat. 33.628342, Long. -117.927933) between May 2013 and Developmental and Cell Biology, University of California, USA, January 2020, and individual crustacean specimens were documented by video microscopy. Email Adult crustaceans were collected from solid substrates in the same areas. Specimens were preserved in ethanol and sent to the Canadian Centre for DNA Barcoding at the Received: June 03, 2021 | Published: July 26, 2021 University of Guelph, Ontario, Canada for sequencing of the COI DNA barcode. From 1042 specimens, 544 COI sequences were obtained falling into 199 Barcode Identification Numbers (BINs), of which 76 correspond to recognized species. For 15 species of decapods (Loxorhynchus grandis, Pelia tumida, Pugettia dalli, Metacarcinus anthonyi, Metacarcinus gracilis, Pachygrapsus crassipes, Pleuroncodes planipes, Lophopanopeus sp., Pinnixa franciscana, Pinnixa tubicola, Pagurus longicarpus, Petrolisthes cabrilloi, Portunus xantusii, Hemigrapsus oregonensis, Heptacarpus brevirostris), DNA barcoding allowed the matching of different life-cycle stages (zoea, megalops, adult). -
Measurements of Plankton Distribution in the Ocean Using
Measurements of Plankton Distribution in the Ocean Using Submersible Holography Edwin Malkiel, Omar Alquaddoomi and Joseph Katz Department of Mechanical Engineering, The Johns Hopkins University Baltimore, MD 21218 USA Abstract A submersible holography system for in situ recordings of the spatial distribution of plankton has been developed and deployed. The system utilizes a ruby laser with an in-line recording configuration and has a sample volume of 732 ml. The reconstructed images have a resolution ranging from 10 - 20 µm for spherical particles and 3 µm for linear particles that lie within 100 mm from the film. Reconstructed volumes from holograms recorded during two recent deployments in the Strait of Georgia are scanned to obtain focused images of the particles, their position, size, orientation. The particles are also classified to several groups based on their morphological characteristics. One of the sets includes holograms recorded during a 15 minute vertical transect of the top 30 m of the water column. Along with the holograms, the data includes records of depth, temperature, salinity, dissolved oxygen and optical transmissivity. The results show substantial variations in population makeup between layers spaced a short distance apart, particle concentration maxima at and near a pycnocline and evidence of zooplankton migration. A predominant horizontal diatom orientation is indicated in the region of peak diatom concentration. Individual holograms show clustering within different classes of plankton. Keywords: holography, plankton distribution, thin layer, copepod 1.0 Introduction As demand on the world's fisheries increase, there is considerable concern over the sustainability of such resources. There is also concern over the increasing frequency of harmful algal blooms in coastal waters, not only because of their effect on the fisheries, but also because their effect on people. -
Taxonomy, Biology and Phylogeny of Miraciidae (Copepoda: Harpacticoida)
TAXONOMY, BIOLOGY AND PHYLOGENY OF MIRACIIDAE (COPEPODA: HARPACTICOIDA) Rony Huys & Ruth Böttger-Schnack SARSIA Huys, Rony & Ruth Böttger-Schnack 1994 12 30. Taxonomy, biology and phytogeny of Miraciidae (Copepoda: Harpacticoida). - Sarsia 79:207-283. Bergen. ISSN 0036-4827. The holoplanktonic family Miraciidae (Copepoda, Harpacticoida) is revised and a key to the four monotypic genera presented. Amended diagnoses are given for Miracia Dana, Oculosetella Dahl and Macrosetella A. Scott, based on complete redescriptions of their respective type species M. efferata Dana, 1849, O. gracilis (Dana, 1849) and M. gracilis (Dana, 1847). A fourth genus Distioculus gen. nov. is proposed to accommodate Miracia minor T. Scott, 1894. The occurrence of two size-morphs of M. gracilis in the Red Sea is discussed, and reliable distribution records of the problematic O. gracilis are compiled. The first nauplius of M. gracilis is described in detail and changes in the structure of the antennule, P2 endopod and caudal ramus during copepodid development are illustrated. Phylogenetic analysis revealed that Miracia is closest to the miraciid ancestor and placed Oculosetella-Macrosetella at the terminal branch of the cladogram. Various aspects of miraciid biology are reviewed, including reproduction, postembryonic development, verti cal and geographical distribution, bioluminescence, photoreception and their association with filamentous Cyanobacteria {Trichodesmium). Rony Huys, Department of Zoology, The Natural History Museum, Cromwell Road, Lon don SW7 5BD, England. - Ruth Böttger-Schnack, Institut für Meereskunde, Düsternbroo- ker Weg 20, D-24105 Kiel, Germany. CONTENTS Introduction.............. .. 207 Genus Distioculus pacticoids can be carried into the open ocean by Material and methods ... .. 208 gen. nov.................. 243 algal rafting. Truly planktonic species which perma Systematics and Distioculus minor nently reside in the water column, however, form morphology .......... -
Ocean Deoxygenation and Copepods: Coping with Oxygen Minimum Zone Variability
Biogeosciences, 17, 2315–2339, 2020 https://doi.org/10.5194/bg-17-2315-2020 © Author(s) 2020. This work is distributed under the Creative Commons Attribution 4.0 License. Ocean deoxygenation and copepods: coping with oxygen minimum zone variability Karen F. Wishner1, Brad Seibel2, and Dawn Outram1 1Graduate School of Oceanography, University of Rhode Island, Narragansett, RI 02882, USA 2College of Marine Science, University of South Florida, St. Petersburg, FL 33701, USA Correspondence: Karen F. Wishner ([email protected]) Received: 27 September 2019 – Discussion started: 28 October 2019 Revised: 31 March 2020 – Accepted: 2 April 2020 – Published: 24 April 2020 Abstract. Increasing deoxygenation (loss of oxygen) of compression concept). These distribution depths changed by the ocean, including expansion of oxygen minimum zones tens to hundreds of meters depending on the species, oxygen (OMZs), is a potentially important consequence of global profile, and phenomenon. For example, at the lower oxycline, warming. We examined present-day variability of vertical the depth of maximum abundance for Lucicutia hulsemannae distributions of 23 calanoid copepod species in the East- shifted from ∼ 600 to ∼ 800 m, and the depth of diapause for ern Tropical North Pacific (ETNP) living in locations with Eucalanus inermis shifted from ∼ 500 to ∼ 775 m, in an ex- different water column oxygen profiles and OMZ inten- panded OMZ compared to a thinner OMZ, but remained at sity (lowest oxygen concentration and its vertical extent in similar low oxygen levels in -
Marine Plankton Diatoms of the West Coast of North America
MARINE PLANKTON DIATOMS OF THE WEST COAST OF NORTH AMERICA BY EASTER E. CUPP UNIVERSITY OF CALIFORNIA PRESS BERKELEY AND LOS ANGELES 1943 BULLETIN OF THE SCRIPPS INSTITUTION OF OCEANOGRAPHY OF THE UNIVERSITY OF CALIFORNIA LA JOLLA, CALIFORNIA EDITORS: H. U. SVERDRUP, R. H. FLEMING, L. H. MILLER, C. E. ZoBELL Volume 5, No.1, pp. 1-238, plates 1-5, 168 text figures Submitted by editors December 26,1940 Issued March 13, 1943 Price, $2.50 UNIVERSITY OF CALIFORNIA PRESS BERKELEY, CALIFORNIA _____________ CAMBRIDGE UNIVERSITY PRESS LONDON, ENGLAND [CONTRIBUTION FROM THE SCRIPPS INSTITUTION OF OCEANOGRAPHY, NEW SERIES, No. 190] PRINTED IN THE UNITED STATES OF AMERICA Taxonomy and taxonomic names change over time. The names and taxonomic scheme used in this work have not been updated from the original date of publication. The published literature on marine diatoms should be consulted to ensure the use of current and correct taxonomic names of diatoms. CONTENTS PAGE Introduction 1 General Discussion 2 Characteristics of Diatoms and Their Relationship to Other Classes of Algae 2 Structure of Diatoms 3 Frustule 3 Protoplast 13 Biology of Diatoms 16 Reproduction 16 Colony Formation and the Secretion of Mucus 20 Movement of Diatoms 20 Adaptations for Flotation 22 Occurrence and Distribution of Diatoms in the Ocean 22 Associations of Diatoms with Other Organisms 24 Physiology of Diatoms 26 Nutrition 26 Environmental Factors Limiting Phytoplankton Production and Populations 27 Importance of Diatoms as a Source of food in the Sea 29 Collection and Preparation of Diatoms for Examination 29 Preparation for Examination 30 Methods of Illustration 33 Classification 33 Key 34 Centricae 39 Pennatae 172 Literature Cited 209 Plates 223 Index to Genera and Species 235 MARINE PLANKTON DIATOMS OF THE WEST COAST OF NORTH AMERICA BY EASTER E.