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Molecular Phylogeny of Laetiporus and Other Brown Rot Polypore Genera in North America
Mycologia, 100(3), 2008, pp. 417–430. DOI: 10.3852/07-124R2 # 2008 by The Mycological Society of America, Lawrence, KS 66044-8897 Molecular phylogeny of Laetiporus and other brown rot polypore genera in North America Daniel L. Lindner1 Key words: evolution, Fungi, Macrohyporia, Mark T. Banik Polyporaceae, Poria, root rot, sulfur shelf, Wolfiporia U.S.D.A. Forest Service, Madison Field Office of the extensa Northern Research Station, Center for Forest Mycology Research, One Gifford Pinchot Drive, Madison, Wisconsin 53726 INTRODUCTION The genera Laetiporus Murrill, Leptoporus Que´l., Phaeolus (Pat.) Pat., Pycnoporellus Murrill and Wolfi- Abstract: Phylogenetic relationships were investigat- poria Ryvarden & Gilb. contain species that possess ed among North American species of Laetiporus, simple septate hyphae, cause brown rots and produce Leptoporus, Phaeolus, Pycnoporellus and Wolfiporia annual, polyporoid fruiting bodies with hyaline using ITS, nuclear large subunit and mitochondrial spores. These shared morphological and physiologi- small subunit rDNA sequences. Members of these cal characters have been considered important in genera have poroid hymenophores, simple septate traditional polypore taxonomy (e.g. Gilbertson and hyphae and cause brown rots in a variety of substrates. Ryvarden 1986, Gilbertson and Ryvarden 1987, Analyses indicate that Laetiporus and Wolfiporia are Ryvarden 1991). However recent molecular work not monophyletic. All North American Laetiporus indicates that Laetiporus, Phaeolus and Pycnoporellus species formed a well supported monophyletic group fall within the ‘‘Antrodia clade’’ of true polypores (the ‘‘core Laetiporus clade’’ or Laetiporus s.s.) with identified by Hibbett and Donoghue (2001) while the exception of L. persicinus, which showed little Leptoporus and Wolfiporia fall respectively within the affinity for any genus for which sequence data are ‘‘phlebioid’’ and ‘‘core polyporoid’’ clades of true available. -
A Phylogenetic Overview of the Antrodia Clade (Basidiomycota, Polyporales)
Mycologia, 105(6), 2013, pp. 1391–1411. DOI: 10.3852/13-051 # 2013 by The Mycological Society of America, Lawrence, KS 66044-8897 A phylogenetic overview of the antrodia clade (Basidiomycota, Polyporales) Beatriz Ortiz-Santana1 phylogenetic studies also have recognized the genera Daniel L. Lindner Amylocystis, Dacryobolus, Melanoporia, Pycnoporellus, US Forest Service, Northern Research Station, Center for Sarcoporia and Wolfiporia as part of the antrodia clade Forest Mycology Research, One Gifford Pinchot Drive, (SY Kim and Jung 2000, 2001; Binder and Hibbett Madison, Wisconsin 53726 2002; Hibbett and Binder 2002; SY Kim et al. 2003; Otto Miettinen Binder et al. 2005), while the genera Antrodia, Botanical Museum, University of Helsinki, PO Box 7, Daedalea, Fomitopsis, Laetiporus and Sparassis have 00014, Helsinki, Finland received attention in regard to species delimitation (SY Kim et al. 2001, 2003; KM Kim et al. 2005, 2007; Alfredo Justo Desjardin et al. 2004; Wang et al. 2004; Wu et al. 2004; David S. Hibbett Dai et al. 2006; Blanco-Dios et al. 2006; Chiu 2007; Clark University, Biology Department, 950 Main Street, Worcester, Massachusetts 01610 Lindner and Banik 2008; Yu et al. 2010; Banik et al. 2010, 2012; Garcia-Sandoval et al. 2011; Lindner et al. 2011; Rajchenberg et al. 2011; Zhou and Wei 2012; Abstract: Phylogenetic relationships among mem- Bernicchia et al. 2012; Spirin et al. 2012, 2013). These bers of the antrodia clade were investigated with studies also established that some of the genera are molecular data from two nuclear ribosomal DNA not monophyletic and several modifications have regions, LSU and ITS. A total of 123 species been proposed: the segregation of Antrodia s.l. -
Intragenomic Variation in the ITS Rdna Region Obscures Phylogenetic Relationships and Inflates Estimates of Operational Taxonomic Units in Genus Laetiporus
Mycologia, 103(4), 2011, pp. 731–740. DOI: 10.3852/10-331 # 2011 by The Mycological Society of America, Lawrence, KS 66044-8897 Intragenomic variation in the ITS rDNA region obscures phylogenetic relationships and inflates estimates of operational taxonomic units in genus Laetiporus Daniel L. Lindner1 spacer region, intragenomic variation, molecular Mark T. Banik drive, sulfur shelf US Forest Service, Northern Research Station, Center for Forest Mycology Research, One Gifford Pinchot Drive, Madison, Wisconsin 53726 INTRODUCTION Genus Laetiporus Murrill (Basidiomycota, Polypo- rales) contains important polypore species with Abstract: Regions of rDNA are commonly used to worldwide distribution and the ability to produce infer phylogenetic relationships among fungal species cubical brown rot in living and dead wood of conifers and as DNA barcodes for identification. These and angiosperms. Ribosomal DNA sequences, includ- regions occur in large tandem arrays, and concerted ing sequences from the internal transcribed spacer evolution is believed to reduce intragenomic variation (ITS) and large subunit (LSU) regions, have been among copies within these arrays, although some used to define species and infer phylogenetic variation still might exist. Phylogenetic studies typi- relationships in Laetiporus and to confirm the cally use consensus sequencing, which effectively existence of cryptic species (Lindner and Banik conceals most intragenomic variation, but cloned 2008, Ota and Hattori 2008, Tomsovsky and Jankovsky sequences containing intragenomic variation are 2008, Ota et al. 2009, Vasaitis et al. 2009) described becoming prevalent in DNA databases. To under- with mating compatibility, ITS-RFLP, morphology stand effects of using cloned rDNA sequences in and host preference data (Banik et al. 1998, Banik phylogenetic analyses we amplified and cloned the and Burdsall 1999, Banik and Burdsall 2000, Burdsall ITS region from pure cultures of six Laetiporus and Banik 2001). -
Boletes from Belize and the Dominican Republic
Fungal Diversity Boletes from Belize and the Dominican Republic Beatriz Ortiz-Santana1*, D. Jean Lodge2, Timothy J. Baroni3 and Ernst E. Both4 1Center for Forest Mycology Research, Northern Research Station, USDA-FS, Forest Products Laboratory, One Gifford Pinchot Drive, Madison, Wisconsin 53726-2398, USA 2Center for Forest Mycology Research, Northern Research Station, USDA-FS, PO Box 1377, Luquillo, Puerto Rico 00773-1377, USA 3Department of Biological Sciences, PO Box 2000, SUNY-College at Cortland, Cortland, New York 13045, USA 4Buffalo Museum of Science, 1020 Humboldt Parkway, Buffalo, New York 14211, USA Ortiz-Santana, B., Lodge, D.J., Baroni, T.J. and Both, E.E. (2007). Boletes from Belize and the Dominican Republic. Fungal Diversity 27: 247-416. This paper presents results of surveys of stipitate-pileate Boletales in Belize and the Dominican Republic. A key to the Boletales from Belize and the Dominican Republic is provided, followed by descriptions, drawings of the micro-structures and photographs of each identified species. Approximately 456 collections from Belize and 222 from the Dominican Republic were studied comprising 58 species of boletes, greatly augmenting the knowledge of the diversity of this group in the Caribbean Basin. A total of 52 species in 14 genera were identified from Belize, including 14 new species. Twenty-nine of the previously described species are new records for Belize and 11 are new for Central America. In the Dominican Republic, 14 species in 7 genera were found, including 4 new species, with one of these new species also occurring in Belize, i.e. Retiboletus vinaceipes. Only one of the previously described species found in the Dominican Republic is a new record for Hispaniola and the Caribbean. -
ISMM NEWSLETTER, Volume 1, Issue 8, Date Released:2017-12-18
Volume 1, Issue 8 Date-released: December 18, 2017 News reports - The 9th International Medicinal Mushrooms Conference (IMMC9) - The 11th Chinese Mushroom Festival held in Zhangzhou Up-coming events - First Circular of the First Chinese (Gutian) Rare Mushroom Conference - Welcome to International Mycological Congress (IMC) 11 Research progress - New Researches - Recommendation of Book--Edible and Medicinal Mushrooms Technology and Applications, Edited by Diego Cunha Zied and Arturo Pardo-Gimenez Points and Reviews - Medicinal Mushrooms (Part III), by Jure Pohleven, Tamara Korošec, Andrej Gregori - Medicinal Mushrooms in Human Clinical Studies. Part I. Anticancer, Oncoimmunological, and Immunomodulatory Activities: A Review (Part I), by Solomon P. Wasser Call for Papers Contact information Issue Editor- Mr. Ziqiang Liu [email protected] Department of Edible Mushrooms, CFNA, 4/F, Talent International Building No. 80 Guangqumennei Street, Dongcheng District, Beijing 10062, China News Reports The 9th International Medicinal Mushrooms Conference (IMMC9), September 24-28, 2017, Palermo, Italy Maria Letizia Gargano1& Giuseppe Venturella2 1Department of Earth and Maine Science, University of Palermo, Bld. 16, I-90128 Palermo (Italy); 2Department of Agricultural, Food and Forest Sciences, University of Palermo, Bld. 5, I-90128 Palermo (Italy) In September 2017 over 200 delegates from 49 different countries (Fig. 1) gathered in Splendid Hotel La Torre, Mondello (Palermo, Italy), for the 9th International Medicinal Mushrooms Conference. IMMC9 in Palermo was the first to be held in Italy. The theme to the Conference was “Advances in Medicinal Mushroom Science: Building Bridges between Western and Eastern Medicine”. IMMC9 participants had the opportunity to discuss and share scientific innovations in the medicinal mushroom sector and to become aware of current research results. -
Phylogenetic Position and Taxonomy of Kusaghiporia Usambarensis Gen
Mycology An International Journal on Fungal Biology ISSN: 2150-1203 (Print) 2150-1211 (Online) Journal homepage: http://www.tandfonline.com/loi/tmyc20 Phylogenetic position and taxonomy of Kusaghiporia usambarensis gen. et sp. nov. (Polyporales) Juma Mahmud Hussein, Donatha Damian Tibuhwa & Sanja Tibell To cite this article: Juma Mahmud Hussein, Donatha Damian Tibuhwa & Sanja Tibell (2018): Phylogenetic position and taxonomy of Kusaghiporia usambarensis gen. et sp. nov. (Polyporales), Mycology, DOI: 10.1080/21501203.2018.1461142 To link to this article: https://doi.org/10.1080/21501203.2018.1461142 © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. Published online: 15 Apr 2018. Submit your article to this journal View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=tmyc20 MYCOLOGY, 2018 https://doi.org/10.1080/21501203.2018.1461142 Phylogenetic position and taxonomy of Kusaghiporia usambarensis gen. et sp. nov. (Polyporales) Juma Mahmud Husseina,b, Donatha Damian Tibuhwab and Sanja Tibella aInstitute of Organismal Biology, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden; bDepartment of Molecular Biology and Biotechnology, College of Natural & Applied Sciences, University of Dar es Salaam, Dar es Salaam, Tanzania ABSTRACT ARTICLE HISTORY A large polyporoid mushroom from the West Usambara Mountains in North-eastern Tanzania Received 17 November 2017 produces dark brown, up to 60-cm large fruiting bodies that at maturity may weigh more than Accepted 2 April 2018 10 kg. It has a high rate of mycelial growth and regeneration and was found growing on both dry KEYWORDS and green leaves of shrubs; attached to the base of living trees, and it was also observed to Kusaghiporia; molecular degrade dead snakes and insects accidentally coming into contact with it. -
A Revised Family-Level Classification of the Polyporales (Basidiomycota)
fungal biology 121 (2017) 798e824 journal homepage: www.elsevier.com/locate/funbio A revised family-level classification of the Polyporales (Basidiomycota) Alfredo JUSTOa,*, Otto MIETTINENb, Dimitrios FLOUDASc, € Beatriz ORTIZ-SANTANAd, Elisabet SJOKVISTe, Daniel LINDNERd, d €b f Karen NAKASONE , Tuomo NIEMELA , Karl-Henrik LARSSON , Leif RYVARDENg, David S. HIBBETTa aDepartment of Biology, Clark University, 950 Main St, Worcester, 01610, MA, USA bBotanical Museum, University of Helsinki, PO Box 7, 00014, Helsinki, Finland cDepartment of Biology, Microbial Ecology Group, Lund University, Ecology Building, SE-223 62, Lund, Sweden dCenter for Forest Mycology Research, US Forest Service, Northern Research Station, One Gifford Pinchot Drive, Madison, 53726, WI, USA eScotland’s Rural College, Edinburgh Campus, King’s Buildings, West Mains Road, Edinburgh, EH9 3JG, UK fNatural History Museum, University of Oslo, PO Box 1172, Blindern, NO 0318, Oslo, Norway gInstitute of Biological Sciences, University of Oslo, PO Box 1066, Blindern, N-0316, Oslo, Norway article info abstract Article history: Polyporales is strongly supported as a clade of Agaricomycetes, but the lack of a consensus Received 21 April 2017 higher-level classification within the group is a barrier to further taxonomic revision. We Accepted 30 May 2017 amplified nrLSU, nrITS, and rpb1 genes across the Polyporales, with a special focus on the Available online 16 June 2017 latter. We combined the new sequences with molecular data generated during the Poly- Corresponding Editor: PEET project and performed Maximum Likelihood and Bayesian phylogenetic analyses. Ursula Peintner Analyses of our final 3-gene dataset (292 Polyporales taxa) provide a phylogenetic overview of the order that we translate here into a formal family-level classification. -
NEMF MASTERLIST - Sorted by Taxonomy
NEMF MASTERLIST - Sorted by Taxonomy Sunday, April 24, 2011 Page 1 of 80 Kingdom Phylum Class Order Family Genus and Species Amoebozoa Mycetomycota Protosteliomycetes Protosteliales Ceratiomyxaceae Ceratiomyxa fruticulosa var. fruticulosa Ceratiomyxa fruticulosa var. globosa Ceratiomyxa fruticulosa var. poroides Mycetozoa Myxogastrea Incertae Sedis in Myxogastrea Stemonitidaceae Brefeldia maxima Comatricha dictyospora Comatricha nigra Comatricha sp. Comatricha typhoides Lamproderma sp. Stemonitis axifera Stemonitis axifera, cf. Stemonitis fusca Stemonitis herbatica Stemonitis nigrescens Stemonitis smithii Stemonitis sp. Stemonitis splendens Fungus Ascomycota Ascomycetes Boliniales Boliniaceae Camarops petersii Capnodiales Capnodiaceae Capnodium tiliae Diaporthales Valsaceae Cryphonectria parasitica Valsaria peckii Elaphomycetales Elaphomycetaceae Elaphomyces granulatus Elaphomyces muricatus Elaphomyces sp. Erysiphales Erysiphaceae Erysiphe polygoni Microsphaera alni Microsphaera alphitoides Microsphaera penicillata Uncinula sp. Halosphaeriales Halosphaeriaceae Cerioporiopsis pannocintus Hysteriales Hysteriaceae Glonium stellatum Hysterium angustatum Micothyriales Microthyriaceae Microthyrium sp. Mycocaliciales Mycocaliciaceae Phaeocalicium polyporaeum Ostropales Graphidaceae Graphis scripta Stictidaceae Cryptodiscus sp. 1 Peltigerales Collemataceae Leptogium cyanescens Peltigeraceae Peltigera canina Peltigera evansiana Peltigera horizontalis Peltigera membranacea Peltigera praetextala Pertusariales Icmadophilaceae Dibaeis baeomyces Pezizales -
FUNGI of the SAND PRAIRIE-SCRUB OAK NATURE PRESERVE Illinois Nongame Wildlife Conservation Fund 1993-1994 Small Project Program Report
0 FUNGI OF THE SAND PRAIRIE-SCRUB OAK NATURE PRESERVE Illinois Nongame Wildlife Conservation Fund 1993-1994 Small Project Program Report August 10, 1994 0 Dr . Andrew S . Methven Botany Department . Eastern Illinois University Charleston, IL 61920 Introduction The vegetation found in the Sand Prairie-Scrub Oak Nature Preserve (nine miles south of Havana, between Bath and Kilbourne, Sec . 23 and parts of Secs . 14 and 26, T20N, R9W', 3PM, Mason Co) is a mosaic of three unique vascular plant communities - sand prairie, savanna, and closed forest . The closed forests in the preserve are dominated by a stable community of shade intolerant trees including black oak (Quercus velutina), blackjack oak (Quercus marilandica), black hickory, (Carya texana), and mockernut hickory (Carya tanentosa) which thrive under xeric conditions in acidic, sandy soils . Despite the number of floristic and ecological studies completed to date on these closed forests, there has been little effort to catalog the fungi which occur in these habitats and assess their ecological role in the maintenance and preservation of the forest . Although the importance of saprobic fungi as agents of decomposition and nutrient recycling is well-established, the role of fungi as mycorrhizal associates with vascular plants has only recently begun to be assessed and understood . Mycorrhizae are unique symbiotic associations which form between fungal hyphae and the roots of vascular plants . Since the fungal hyphae penetrate the soil to a mach greater extent than roots, they have a greater surface area in contact with soil moisture and nutrients than vascular plants . As such, the fungal hyphae facilitate the uptake of water and nutrients from the soil and transport to the plant host . -
B735: Ectomycorrhizae of Maine 1: a Listing of Boletaceae with the Associated Hosts Richard L
The University of Maine DigitalCommons@UMaine Bulletins Maine Agricultural and Forest Experiment Station 1-1977 B735: Ectomycorrhizae of Maine 1: A Listing of Boletaceae with the Associated Hosts Richard L. Homola Paul A. Mistretta Follow this and additional works at: https://digitalcommons.library.umaine.edu/aes_bulletin Part of the Botany Commons Recommended Citation Homola, R.L., and P.A. Mistretta. 1977. Ectomycorrhizae of Maine 1: A listing of the Boletaceae with the associated hosts. Life Sciences and Agricultural Experiment Station Bulletin 735. This Article is brought to you for free and open access by DigitalCommons@UMaine. It has been accepted for inclusion in Bulletins by an authorized administrator of DigitalCommons@UMaine. For more information, please contact [email protected]. ECTOMYCORRHIZAE OF MAINE A Listing of Boletaceae with the Associated Hosts Richard L. Homola and Paul A. Mistretta LIFE SCIENCES AND AGRICULTURE EXPERIMENT STATION . UNIVERSITY OF MAINE AT ORONO BULLETIN 735 JANUARY 1977 CONTENTS Introduction . .. 1 Mycorrhizal List . 2 Summary .. .... .. .. ......... ............ ... 7 References Cited . .. 8 IIIustrations . .... ... .......... ... .. .... .... " 9 LSA EXPERIMENT STATION BULLETIN 735 ECTOMYCORRHIZAE OF MAINE' 1. A LISTING OF BOLETACEAE WITH THE ASSOCIATED HOSTS. Richard L. Homola and Paul A. Mistretta Department of Botany and Plant Pathology University of Maine, Orono, Maine 04473 INTRODUCTION Mycorrhizae are intimate associations of fungal hyphae and the roots of higher plants. The roots of most shrubs and many, if not all, trees form mycorrhizal associations. There are two basic types of root-fungus associations: ectomycor rhizae and endomycorrhizae. Ectomycorrhizae are root-fungus associa tions where the fungal hyphae form compact mats covering the root's surface, but where the hyphae do not actually penetrate the root cells. -
Final Report
NATURAL RESOURCE INVENTORY of the WHITE OAK POND WATERSHED Ashland, Center Harbor, & Holderness, NH FINAL REPORT [White Oak Pond as seen from the northeast shoreline] Compiled by: Dr. Rick Van de Poll Ecosystem Management Consultants 30 N. Sandwich Rd. Center Sandwich, NH 03227 603‐284‐6851 [email protected] Submitted to: Squam Lakes Conservation Society December 2020 i ii SUMMARY The 2982‐acre White Oak Pond watershed lies at the head of Mill Brook along Route 3 in Holderness, New Hampshire. It includes the 298‐acre, 35‐foot deep White Oak Pond (and islands) and its two primary drainage systems in Holderness, Ashland, and Center Harbor. The watershed forms the western part of the 28,094‐acre Squam Lake Drainage (HUC 010700010502) and lies immediately above Piper Cove on Squam Lake. The two perennial streams total 2.26 miles, with the largest one rising on the north slopes of McCrillis Hill in Center Harbor and flowing northerly, and the slightly smaller one draining an unnamed hill in the eastern corner of Ashland and flowing easterly through a large beaver marsh on Coxboro Road. The watershed is primarily forested, although ponds, wetlands and other surface waters make up a substantial portion of the area (23.8%). Forests are primarily mixed hardwoods and conifers, with an abundance of white pine and red oak that have regenerated from former pastureland. Forested wetlands make up the plurality of the hydric soils areas, where red maple swamps are the most common. Other commercially viable timber species include red spruce, eastern hemlock, sugar maple, yellow birch, beech, and white oak. -
Checklist of Indiana Fungi I: Macrofungi
2017. Proceedings of the Indiana Academy of Science 126(1):12–34 CHECKLIST OF INDIANA FUNGI I: MACROFUNGI Scott T. Bates1, Justin Golday, Rachel L. Kunnen2 and Nathanael J. Pilla3: Department of Biological Sciences, Purdue University Northwest, Westville, IN 46391 USA ABSTRACT. A checklist of macrofungi was compiled for Indiana as part of a larger effort to document fungi within the state. Our study compiled records of Indiana fungi from digitized specimen data available online through the Mycology Collections data Portal (http://mycoportal.org). These data were supplemented with records from the scientific literature. While several small checklists of Indiana fungi exist, the majority of these being published previously in the Proceeding of the Indiana Academy of Science, our study represents the first to comprehensively compile all the available data on Indiana fungi. Overall, more than 19,000 records of Indiana fungi were examined, with 1410 species of macrofungi being documented in this publication. These species represent 24 fungal orders from two major phyla, with 757 species in this checklist being reported in the literature for the first time here. Our study also recovered records documenting other groups of Indiana fungi, such as microfungi, which will be covered in subsequent publications. Keywords: Ascomycota, Basidiomycota, checklist, Eumycota, fungi, taxonomy INTRODUCTION Members of the kingdom Eumycota (Fungi) are filamentous, or sometimes unicellular, hetero- A wide range of natural communities exist in trophic organisms