Chem 51B Chapter 15 Notes
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Reactivity and Mechanism of the Reactions in Volving Carbonyl Ylide
Bull, i Korean Chem. Soc.t Vol. 14, No. 1, 1993 149 10. 0. Inganas, R. Erlandsson, C. Nylander, and I. Lunds- eration of other types of ylides.6 Even though many studies trom, J. Phys. Chem. Solids, 45, 427 (1984). have been reported for the intermediates of carbonyl ylides 11. P. Novak, B. Rasch, and W. Vielstich, J. Electro사 诚m Soc., in the reactions of carbenes with a carbonyl oxygens,7 the 138, 3300 (1991). reactions are limited to the discussion of the transition metal 12. K. M. Cheung, D. Bloor, and G. C. Stevens, Polymers, catalyzed decomposition of a diazo compounds in the prese 29, 1709 (1988). nce of a carbonyl group. In this paper we report the reactivity and mechanism of the reactions involving carbonyl ylide intermediate from the photolytic kinetic results of non-catalytic decompositions of diazomethane and diphenyldiazomethane in the presence of a carbonyl group. Reactivity and Mechanism of the Reactions In volving Carbonyl Ylide Intermediate Experimentals Dae Dong Sung*, Kyu Chui Kim, Sang Hoon Lee, General Photolysis Conditions. Diazomethane was and Zoon Ha Ryu* generated by Aldrich MNNG Diazald apparatus as follows.8 1 mmol of l-methyl-3-nitro-l-nitrosoguanidine (MNNG) is Department of Chemistry, placed in the inside tube of. the Diazald kit through its screw Dong-A University, Pusan 604-714 cap opening along with 0.5 mL of water of dissipate any ^Department of Chemistry, heat generated. 3 mL of diethyl ether is placed in the outside Dong-Eui University, Pusan 614-010 tube and the two parts are assembled with a butyl "O”-ring and held with a pinch-type clamp. -
Free Radical Reactions (Read Chapter 4) A
Chemistry 5.12 Spri ng 2003, Week 3 / Day 2 Handout #7: Lecture 11 Outline IX. Free Radical Reactions (Read Chapter 4) A. Chlorination of Methane (4-2) 1. Mechanism (4-3) B. Review of Thermodynamics (4-4,5) C. Review of Kinetics (4-8,9) D. Reaction-Energy Diagrams (4-10) 1. Thermodynamic Control 2. Kinetic Control 3. Hammond Postulate (4-14) 4. Multi-Step Reactions (4-11) 5. Chlorination of Methane (4-7) Suggested Problems: 4-35–37,40,43 IX. A. Radical Chlorination of Methane H heat (D) or H H C H Cl Cl H C Cl H Cl H light (hv) H H Cl Cl D or hv D or hv etc. H C Cl H C Cl H Cl Cl C Cl H Cl Cl Cl Cl Cl H H H • Why is light or heat necessary? • How fast does it go? • Does it give off or consume heat? • How fast are each of the successive reactions? • Can you control the product ratio? To answer these questions, we need to: 1. Understand the mechanism of the reaction (arrow-pushing!). 2. Use thermodynamics and kinetics to analyze the reaction. 1 1. Mechanism of Radical Chlorination of Methane (Free-Radical Chain Reaction) Free-radical chain reactions have three distinct mechanistic steps: • initiation step: generates reactive intermediate • propagation steps: reactive intermediates react with stable molecules to generate other reactive intermediates (allows chain to continue) • termination step: side-reactions that slow the reaction; usually combination of two reactive intermediates into one stable molecule Initiation Step: Cl2 absorbs energy and the bond is homolytically cleaved. -
Photoionization Studies of Reactive Intermediates Using Synchrotron
Photoionization Studies of Reactive Intermediates using Synchrotron Radiation by John M.Dyke* School of Chemistry University of Southampton SO17 1BJ UK *e-mail: [email protected] 1 Abstract Photoionization of reactive intermediates with synchrotron radiation has reached a sufficiently advanced stage of development that it can now contribute to a number of areas in gas-phase chemistry and physics. These include the detection and spectroscopic study of reactive intermediates produced by bimolecular reactions, photolysis, pyrolysis or discharge sources, and the monitoring of reactive intermediates in situ in environments such as flames. This review summarises advances in the study of reactive intermediates with synchrotron radiation using photoelectron spectroscopy (PES) and constant-ionic-state (CIS) methods with angular resolution, and threshold photoelectron spectroscopy (TPES), taking examples mainly from the recent work of the Southampton group. The aim is to focus on the main information to be obtained from the examples considered. As future research in this area also involves photoelectron-photoion coincidence (PEPICO) and threshold photoelectron-photoion coincidence (TPEPICO) spectroscopy, these methods are also described and previous related work on reactive intermediates with these techniques is summarised. The advantages of using PEPICO and TPEPICO to complement and extend TPES and angularly resolved PES and CIS studies on reactive intermediates are highlighted. 2 1.Introduction This review is organised as follows. After an Introduction to the study of reactive intermediates by photoionization with fixed energy photon sources and synchrotron radiation, a number of Case Studies are presented of the study of reactive intermediates with synchrotron radiation using angle resolved PES and CIS, and TPE spectroscopy. -
Trapping and Spectroscopic Characterization of an Fe -Superoxo
Trapping and spectroscopic characterization of an FeIII-superoxo intermediate from a nonheme mononuclear iron-containing enzyme Michael M. Mbughunia, Mrinmoy Chakrabartib, Joshua A. Haydenb, Emile L. Bominaarb, Michael P. Hendrichb, Eckard Münckb, and John D. Lipscomba,1 aDepartment of Biochemistry, Molecular Biology and Biophysics, and Center for Metals in Biocatalysis, University of Minnesota, Minneapolis, MN 55455, and bDepartment of Chemistry, Carnegie Mellon University, Pittsburgh, PA 15213 Edited by Edward I. Solomon, Stanford University, Stanford, CA, and approved August 4, 2010 (received for review July 9, 2010) III •− Fe -O2 intermediates are well known in heme enzymes, but none have been characterized in the nonheme mononuclear FeII enzyme family. Many steps in the O2 activation and reaction cycle of FeII-containing homoprotocatechuate 2,3-dioxygenase are made detectable by using the alternative substrate 4-nitrocatechol (4NC) and mutation of the active site His200 to Asn (H200N). Here, the first intermediate (Int-1) observed after adding O2 to the H200N- 4NC complex is trapped and characterized using EPR and Möss- ∕ III bauer (MB) spectroscopies. Int-1 is a high-spin (S1 ¼ 5 2) Fe anti- ∕ ≈ −1 ferromagnetically (AF) coupled to an S2 ¼ 1 2 radical (J 6cm in H • ¼ JS1 S2). It exhibits parallel-mode EPR signals at g ¼ 8.17 from the S ¼ 2 multiplet, and g ¼ 8.8 and 11.6 from the S ¼ 3 multiplet. 17 These signals are broadened significantly by O2 hyperfine inter- ≈ III •− actions (A17O 180 MHz). Thus, Int-1 is an AF-coupled Fe -O2 spe- cies. The experimental observations are supported by density functional theory calculations that show nearly complete transfer of spin density to the bound O2. -
Oxidative Stress and Radical-Induced Signalling John R
part 2. mechanisms of carcinogenesis chapter 15. Oxidative stress and radical-induced signalling John R. Bucher PART 2 CHAPTER 15 Throughout evolution, aerobic An imbalance between the normal Pierre et al., 2002). Peroxisomes are organisms have developed mul- production of oxygen radicals and a source of H2O2, through reactions tiple defence systems to protect their capture and disposal by pro- involving acyl-CoA oxidase (which themselves against oxygen radicals tective enzyme systems and antiox- is involved in oxidation of long-chain (Benzie, 2000). One-, two-, and idants results in oxidative stress, and fatty acids), d-amino acid oxidase, three-electron reductions of molecu- this condition has been proposed and other oxidases (Schrader and lar oxygen give rise to, respectively, to be the basis of many deleterious Fahimi, 2006). • − superoxide (O2 ), hydrogen peroxide chronic health conditions and dis- When stimulated, inflammatory (H2O2, a radical precursor), and the eases, including cancer. cells such as neutrophils, eosino- highly reactive hydroxyl radical (•OH) phils, and macrophages produce ox- or equivalent transition metal–oxy- Sources of oxygen radicals ygen radicals during the associated gen complexes (Miller et al., 1990). respiratory burst (the rapid release of Reactions of oxygen radicals with Mitochondrial oxidative phosphor- reactive oxygen species from cells) cellular components can deplete an- ylation is a major source of oxy- that involves nicotinamide adenine tioxidants, can cause direct oxidative gen radicals of endogenous -
Photochemistry of S-Alkoxy Dibenzothiphenium Tetrafluoroborates, N-Alkoxy Pyridinium Perchlorates, and Sulfonium Ylides
Iowa State University Capstones, Theses and Graduate Theses and Dissertations Dissertations 2020 Photochemical generation of electron poor reactive intermediates: Photochemistry of S-alkoxy dibenzothiphenium tetrafluoroborates, N-alkoxy pyridinium perchlorates, and Sulfonium ylides Jagadeesh Kolattoor Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/etd Recommended Citation Kolattoor, Jagadeesh, "Photochemical generation of electron poor reactive intermediates: Photochemistry of S-alkoxy dibenzothiphenium tetrafluoroborates, N-alkoxy pyridinium perchlorates, and Sulfonium ylides" (2020). Graduate Theses and Dissertations. 18341. https://lib.dr.iastate.edu/etd/18341 This Thesis is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Photochemical generation of electron poor reactive intermediates: Photochemistry of S- alkoxy dibenzothiophenium tetrafluoroborates, N-alkoxy pyridinium perchlorates, and Sulfonium ylides by Jagadeesh Kolattoor A dissertation submitted to the graduate faculty in partial fulfillment of requirements for the degree of DOCTOR OF PHILOSOPHY Major: Organic Chemistry Program of Study Committee: William S. Jenks, Major Professor Arthur Winter Brett VanVeller Igor Slowing Marek Pruski The student author, whose presentation of the scholarship herein was approved by the program of study committee, is solely responsible for the content of this dissertation. The Graduate College will ensure this dissertation is globally accessible and will not permit alterations after a degree is conferred. Iowa State University Ames, Iowa 2020 Copyright © Jagadeesh Kolattoor, 2020. All rights reserved. -
Introduction to Alkenes and Alkynes in an Alkane, All Covalent Bonds
Introduction to Alkenes and Alkynes In an alkane, all covalent bonds between carbon were σ (σ bonds are defined as bonds where the electron density is symmetric about the internuclear axis) In an alkene, however, only three σ bonds are formed from the alkene carbon -the carbon thus adopts an sp2 hybridization Ethene (common name ethylene) has a molecular formula of CH2CH2 Each carbon is sp2 hybridized with a σ bond to two hydrogens and the other carbon Hybridized orbital allows stronger bonds due to more overlap H H C C H H Structure of Ethylene In addition to the σ framework of ethylene, each carbon has an atomic p orbital not used in hybridization The two p orbitals (each with one electron) overlap to form a π bond (p bonds are not symmetric about the internuclear axis) π bonds are not as strong as σ bonds (in ethylene, the σ bond is ~90 Kcal/mol and the π bond is ~66 Kcal/mol) Thus while σ bonds are stable and very few reactions occur with C-C bonds, π bonds are much more reactive and many reactions occur with C=C π bonds Nomenclature of Alkenes August Wilhelm Hofmann’s attempt for systematic hydrocarbon nomenclature (1866) Attempted to use a systematic name by naming all possible structures with 4 carbons Quartane a alkane C4H10 Quartyl C4H9 Quartene e alkene C4H8 Quartenyl C4H7 Quartine i alkine → alkyne C4H6 Quartinyl C4H5 Quartone o C4H4 Quartonyl C4H3 Quartune u C4H2 Quartunyl C4H1 Wanted to use Quart from the Latin for 4 – this method was not embraced and BUT has remained Used English order of vowels, however, to name the groups -
4.01 Ozone, Hydroxyl Radical, and Oxidative Capacity
4.01 Ozone, Hydroxyl Radical,and OxidativeCapacity R.G.Prinn Massachusetts InstituteofTechnology,Cambridge, MA, USA 4.01.1 INTRODUCTION 1 4.01.2 EVOLUTIONOFOXIDIZING CAPABILITY 3 4.01.2.1 Prebiotic Atmosphere 4 4.01.2.2 Pre-industrialAtmosphere 5 4.01.3 FUNDAMENTAL REACTIONS 5 4.01.3.1 Troposphere 5 4.01.3.2 Stratosphere 7 4.01.4METEOROLOGICAL INFLUENCES 8 4.01.5HUMAN INFLUENCES 9 4.01.5.1 IndustrialRevolution 9 4.01.5.2 FutureProjections 10 4.01.6 MEASURING OXIDATION RATES 11 4.01.6.1 DirectMeasurement 11 4.01.6.2 IndirectMeasurement 13 4.01.7 ATMOSPHERIC MODELS AND OBSERVATIONS 16 4.01.8CONCLUSIONS 16 REFERENCES 17 4.01.1 INTRODUCTION overall rateofthisprocess asthe “oxidation capacity” ofthe atmosphere.Without thiseffi- The atmosphereisachemically complexand cient cleansingprocess,the levels ofmany dynamic systeminteractinginsignificant ways emitted gasescouldriseso high thattheywould withthe oceans,land, andlivingorganisms. A radicallychange the chemicalnatureofour keyprocess proceedinginthe atmosphereis atmosphereandbiosphereand, through the oxidation ofawidevariety ofrelatively reduced greenhouseeffect,our climate. chemicalcompoundsproduced largely bythe Oxidation becameanimportant atmospheric biosphere.Thesecompoundsinclude hydrocar- reaction on Earthonce molecularoxygen(O 2 ) bons(RH),carbon monoxide (CO),sulfur dioxide from photosynthesishad reached sufficiently (SO2 ),nitrogenoxides(NOx ),andammonia high levels.ThisO 2 couldthenphotodissociate (NH3 )amongothers. Theyalso include gases inthe atmosphereto giveoxygenatoms,which associated -
Peroxides and Peroxide- Forming Compounds
FEATURE Peroxides and peroxide- forming compounds By Donald E. Clark Bretherick5 included a discussion of nated. However, concentrated hydro- organic peroxide5 in a chapter on gen peroxide (Ͼ30%), in contact with norganic and organic peroxides, highly reactive and unstable com- ordinary combustible materials (e.g., because of their exceptional reac- pounds and used “oxygen balance” to fabric, oil, wood, or some resins) Itivity and oxidative potential are predict the stability of individual com- poses significant fire or explosion haz- widely used in research laboratories. pounds and to assess the hazard po- ards. Peroxides of alkali metals are not This review is intended to serve as a tential of an oxidative reaction. Jack- particularly shock sensitive, but can 6 guide to the hazards and safety issues son et al. addressed the use of decompose slowly in the presence of associated with the laboratory use, peroxidizable chemicals in the re- moisture and may react violently with handling, and storage of inorganic and search laboratory and published rec- a variety of substances, including wa- organic peroxy-compounds and per- ommendations for maximum storage ter. Thus, the standard iodide test for oxide-forming compounds. time for common peroxide-forming peroxides must not be used with these The relatively weak oxygen-oxygen laboratory solvents. Several solvents, water-reactive compounds.1 linkage (bond-dissociation energy of (e.g., diethyl ether) commonly used in Inorganic peroxides are used as ox- 20 to 50 kcal moleϪ1) is the character- the laboratory can form explosive re- idizing agents for digestion of organic istic structure of organic and inor- action products through a relatively samples and in the synthesis of or- ganic peroxide molecules, and is the slow oxidation process in the pres- ganic peroxides. -
Radical Initiators
Question #61073 – Chemistry – Organic Chemistry Question: List the various methods of generation of free radicals. Discuss in detail various redox sources of free radical generation. Answer: Methods of generation of free radicals Thermal Cracking At temperatures greater than 500º C, and in the absence of oxygen, mixtures of high molecular weight alkanes break down into smaller alkane and alkene fragments. This cracking process is important in the refining of crude petroleum because of the demand for lower boiling gasoline fractions. Free radicals, produced by homolysis of C–C bonds, are known to be intermediates in these transformations. Studies of model alkanes have shown that highly substituted C–C bonds undergo homolysis more readily than do unbranched alkanes. In practice, catalysts are used to lower effective cracking temperatures. Homolysis of Peroxides and Azo Compounds In contrast to stronger C–C and C–H bonds, the very weak O–O bonds of peroxides are cleaved at relatively low temperatures ( 80 to 150 ºC ), as shown in the following equations. The resulting oxy radicals may then initiate other reactions, or may decompose to carbon radicals, as noted in the shaded box. The most commonly used peroxide initiators are depicted in the first two equations. Organic azo compounds (R–N=N–R) are also heat sensitive, decomposing to alkyl radicals and nitrogen. Azobisisobutyronitrile (AIBN) is the most widely used radical initiator of this kind, decomposing slightly faster than benzoyl peroxide at 70 to 80 ºC. The thermodynamic stability of nitrogen provides an overall driving force for this decomposition, but its favorable rate undoubtedly reflects weaker than normal C-N bonds. -
Chemical Basis of Reactive Oxygen Species Reactivity and Involvement in Neurodegenerative Diseases
International Journal of Molecular Sciences Review Chemical Basis of Reactive Oxygen Species Reactivity and Involvement in Neurodegenerative Diseases Fabrice Collin Laboratoire des IMRCP, Université de Toulouse, CNRS UMR 5623, Université Toulouse III-Paul Sabatier, 118 Route de Narbonne, 31062 Toulouse CEDEX 09, France; [email protected] Received: 26 April 2019; Accepted: 13 May 2019; Published: 15 May 2019 Abstract: Increasing numbers of individuals suffer from neurodegenerative diseases, which are characterized by progressive loss of neurons. Oxidative stress, in particular, the overproduction of Reactive Oxygen Species (ROS), play an important role in the development of these diseases, as evidenced by the detection of products of lipid, protein and DNA oxidation in vivo. Even if they participate in cell signaling and metabolism regulation, ROS are also formidable weapons against most of the biological materials because of their intrinsic nature. By nature too, neurons are particularly sensitive to oxidation because of their high polyunsaturated fatty acid content, weak antioxidant defense and high oxygen consumption. Thus, the overproduction of ROS in neurons appears as particularly deleterious and the mechanisms involved in oxidative degradation of biomolecules are numerous and complexes. This review highlights the production and regulation of ROS, their chemical properties, both from kinetic and thermodynamic points of view, the links between them, and their implication in neurodegenerative diseases. Keywords: reactive oxygen species; superoxide anion; hydroxyl radical; hydrogen peroxide; hydroperoxides; neurodegenerative diseases; NADPH oxidase; superoxide dismutase 1. Introduction Reactive Oxygen Species (ROS) are radical or molecular species whose physical-chemical properties are well-known both on thermodynamic and kinetic points of view. -
Free Radicals, Natural Antioxidants, and Their Reaction Mechanisms Cite This: RSC Adv.,2015,5, 27986 Satish Balasaheb Nimse*A and Dilipkumar Palb
RSC Advances REVIEW View Article Online View Journal | View Issue Free radicals, natural antioxidants, and their reaction mechanisms Cite this: RSC Adv.,2015,5, 27986 Satish Balasaheb Nimse*a and Dilipkumar Palb The normal biochemical reactions in our body, increased exposure to the environment, and higher levels of dietary xenobiotic's result in the generation of reactive oxygen species (ROS) and reactive nitrogen species (RNS). The ROS and RNS create oxidative stress in different pathophysiological conditions. The reported chemical evidence suggests that dietary antioxidants help in disease prevention. The antioxidant compounds react in one-electron reactions with free radicals in vivo/in vitro and prevent oxidative damage. Therefore, it is very important to understand the reaction mechanism of antioxidants with the free radicals. This review elaborates the mechanism of action of the natural antioxidant compounds and Received 28th October 2014 assays for the evaluation of their antioxidant activities. The reaction mechanisms of the antioxidant Accepted 12th March 2015 assays are briefly discussed (165 references). Practical applications: understanding the reaction DOI: 10.1039/c4ra13315c mechanisms can help in evaluating the antioxidant activity of various antioxidant compounds as well as Creative Commons Attribution 3.0 Unported Licence. www.rsc.org/advances in the development of novel antioxidants. 1. Introduction and background enzymes convert dangerous oxidative products to hydrogen peroxide (H2O2) and then to water, in a multi-step process in Antioxidants are molecules that inhibit or quench free radical presence of cofactors such as copper, zinc, manganese, and reactions and delay or inhibit cellular damage.1 Though the iron. Non-enzymatic antioxidants work by interrupting free antioxidant defenses are different from species to species, the radical chain reactions.