Free Radical Reactions (Read Chapter 4) A
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Glossary Physics (I-Introduction)
1 Glossary Physics (I-introduction) - Efficiency: The percent of the work put into a machine that is converted into useful work output; = work done / energy used [-]. = eta In machines: The work output of any machine cannot exceed the work input (<=100%); in an ideal machine, where no energy is transformed into heat: work(input) = work(output), =100%. Energy: The property of a system that enables it to do work. Conservation o. E.: Energy cannot be created or destroyed; it may be transformed from one form into another, but the total amount of energy never changes. Equilibrium: The state of an object when not acted upon by a net force or net torque; an object in equilibrium may be at rest or moving at uniform velocity - not accelerating. Mechanical E.: The state of an object or system of objects for which any impressed forces cancels to zero and no acceleration occurs. Dynamic E.: Object is moving without experiencing acceleration. Static E.: Object is at rest.F Force: The influence that can cause an object to be accelerated or retarded; is always in the direction of the net force, hence a vector quantity; the four elementary forces are: Electromagnetic F.: Is an attraction or repulsion G, gravit. const.6.672E-11[Nm2/kg2] between electric charges: d, distance [m] 2 2 2 2 F = 1/(40) (q1q2/d ) [(CC/m )(Nm /C )] = [N] m,M, mass [kg] Gravitational F.: Is a mutual attraction between all masses: q, charge [As] [C] 2 2 2 2 F = GmM/d [Nm /kg kg 1/m ] = [N] 0, dielectric constant Strong F.: (nuclear force) Acts within the nuclei of atoms: 8.854E-12 [C2/Nm2] [F/m] 2 2 2 2 2 F = 1/(40) (e /d ) [(CC/m )(Nm /C )] = [N] , 3.14 [-] Weak F.: Manifests itself in special reactions among elementary e, 1.60210 E-19 [As] [C] particles, such as the reaction that occur in radioactive decay. -
Reactivity and Mechanism of the Reactions in Volving Carbonyl Ylide
Bull, i Korean Chem. Soc.t Vol. 14, No. 1, 1993 149 10. 0. Inganas, R. Erlandsson, C. Nylander, and I. Lunds- eration of other types of ylides.6 Even though many studies trom, J. Phys. Chem. Solids, 45, 427 (1984). have been reported for the intermediates of carbonyl ylides 11. P. Novak, B. Rasch, and W. Vielstich, J. Electro사 诚m Soc., in the reactions of carbenes with a carbonyl oxygens,7 the 138, 3300 (1991). reactions are limited to the discussion of the transition metal 12. K. M. Cheung, D. Bloor, and G. C. Stevens, Polymers, catalyzed decomposition of a diazo compounds in the prese 29, 1709 (1988). nce of a carbonyl group. In this paper we report the reactivity and mechanism of the reactions involving carbonyl ylide intermediate from the photolytic kinetic results of non-catalytic decompositions of diazomethane and diphenyldiazomethane in the presence of a carbonyl group. Reactivity and Mechanism of the Reactions In volving Carbonyl Ylide Intermediate Experimentals Dae Dong Sung*, Kyu Chui Kim, Sang Hoon Lee, General Photolysis Conditions. Diazomethane was and Zoon Ha Ryu* generated by Aldrich MNNG Diazald apparatus as follows.8 1 mmol of l-methyl-3-nitro-l-nitrosoguanidine (MNNG) is Department of Chemistry, placed in the inside tube of. the Diazald kit through its screw Dong-A University, Pusan 604-714 cap opening along with 0.5 mL of water of dissipate any ^Department of Chemistry, heat generated. 3 mL of diethyl ether is placed in the outside Dong-Eui University, Pusan 614-010 tube and the two parts are assembled with a butyl "O”-ring and held with a pinch-type clamp. -
Photoionization Studies of Reactive Intermediates Using Synchrotron
Photoionization Studies of Reactive Intermediates using Synchrotron Radiation by John M.Dyke* School of Chemistry University of Southampton SO17 1BJ UK *e-mail: [email protected] 1 Abstract Photoionization of reactive intermediates with synchrotron radiation has reached a sufficiently advanced stage of development that it can now contribute to a number of areas in gas-phase chemistry and physics. These include the detection and spectroscopic study of reactive intermediates produced by bimolecular reactions, photolysis, pyrolysis or discharge sources, and the monitoring of reactive intermediates in situ in environments such as flames. This review summarises advances in the study of reactive intermediates with synchrotron radiation using photoelectron spectroscopy (PES) and constant-ionic-state (CIS) methods with angular resolution, and threshold photoelectron spectroscopy (TPES), taking examples mainly from the recent work of the Southampton group. The aim is to focus on the main information to be obtained from the examples considered. As future research in this area also involves photoelectron-photoion coincidence (PEPICO) and threshold photoelectron-photoion coincidence (TPEPICO) spectroscopy, these methods are also described and previous related work on reactive intermediates with these techniques is summarised. The advantages of using PEPICO and TPEPICO to complement and extend TPES and angularly resolved PES and CIS studies on reactive intermediates are highlighted. 2 1.Introduction This review is organised as follows. After an Introduction to the study of reactive intermediates by photoionization with fixed energy photon sources and synchrotron radiation, a number of Case Studies are presented of the study of reactive intermediates with synchrotron radiation using angle resolved PES and CIS, and TPE spectroscopy. -
Trapping and Spectroscopic Characterization of an Fe -Superoxo
Trapping and spectroscopic characterization of an FeIII-superoxo intermediate from a nonheme mononuclear iron-containing enzyme Michael M. Mbughunia, Mrinmoy Chakrabartib, Joshua A. Haydenb, Emile L. Bominaarb, Michael P. Hendrichb, Eckard Münckb, and John D. Lipscomba,1 aDepartment of Biochemistry, Molecular Biology and Biophysics, and Center for Metals in Biocatalysis, University of Minnesota, Minneapolis, MN 55455, and bDepartment of Chemistry, Carnegie Mellon University, Pittsburgh, PA 15213 Edited by Edward I. Solomon, Stanford University, Stanford, CA, and approved August 4, 2010 (received for review July 9, 2010) III •− Fe -O2 intermediates are well known in heme enzymes, but none have been characterized in the nonheme mononuclear FeII enzyme family. Many steps in the O2 activation and reaction cycle of FeII-containing homoprotocatechuate 2,3-dioxygenase are made detectable by using the alternative substrate 4-nitrocatechol (4NC) and mutation of the active site His200 to Asn (H200N). Here, the first intermediate (Int-1) observed after adding O2 to the H200N- 4NC complex is trapped and characterized using EPR and Möss- ∕ III bauer (MB) spectroscopies. Int-1 is a high-spin (S1 ¼ 5 2) Fe anti- ∕ ≈ −1 ferromagnetically (AF) coupled to an S2 ¼ 1 2 radical (J 6cm in H • ¼ JS1 S2). It exhibits parallel-mode EPR signals at g ¼ 8.17 from the S ¼ 2 multiplet, and g ¼ 8.8 and 11.6 from the S ¼ 3 multiplet. 17 These signals are broadened significantly by O2 hyperfine inter- ≈ III •− actions (A17O 180 MHz). Thus, Int-1 is an AF-coupled Fe -O2 spe- cies. The experimental observations are supported by density functional theory calculations that show nearly complete transfer of spin density to the bound O2. -
Glossary of Scientific Terms in the Mystery of Matter
GLOSSARY OF SCIENTIFIC TERMS IN THE MYSTERY OF MATTER Term Definition Section acid A substance that has a pH of less than 7 and that can react with 1 metals and other substances. air The mixture of oxygen, nitrogen, and other gasses that is consistently 1 present around us. alchemist A person who practices a form of chemistry from the Middle Ages 1 that was concerned with transforming various metals into gold. Alchemy A type of science and philosophy from the Middle Ages that 1 attempted to perform unusual experiments, taking something ordinary and turning it into something extraordinary. alkali metals Any of a group of soft metallic elements that form alkali solutions 3 when they combine with water. They include lithium, sodium, potassium, rubidium, cesium, and francium. alkaline earth Any of a group of metallic elements that includes beryllium, 3 metals magnesium, calcium, strontium, barium, and radium. alpha particle A positively charged particle, indistinguishable from a helium atom 5, 6 nucleus and consisting of two protons and two neutrons. alpha decay A type of radioactive decay in which a nucleus emits 6 an alpha particle. aplastic anemia A disorder of the bone marrow that results in too few blood cells. 4 apothecary The person in a pharmacy who distributes medicine. 1 atom The smallest component of an element that shares the chemical 1, 2, 3, 4, 5, 6 properties of the element and contains a nucleus with neutrons, protons, and electrons. atomic bomb A bomb whose explosive force comes from a chain reaction based on 6 nuclear fission. atomic number The number of protons in the nucleus of an atom. -
Photochemistry of S-Alkoxy Dibenzothiphenium Tetrafluoroborates, N-Alkoxy Pyridinium Perchlorates, and Sulfonium Ylides
Iowa State University Capstones, Theses and Graduate Theses and Dissertations Dissertations 2020 Photochemical generation of electron poor reactive intermediates: Photochemistry of S-alkoxy dibenzothiphenium tetrafluoroborates, N-alkoxy pyridinium perchlorates, and Sulfonium ylides Jagadeesh Kolattoor Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/etd Recommended Citation Kolattoor, Jagadeesh, "Photochemical generation of electron poor reactive intermediates: Photochemistry of S-alkoxy dibenzothiphenium tetrafluoroborates, N-alkoxy pyridinium perchlorates, and Sulfonium ylides" (2020). Graduate Theses and Dissertations. 18341. https://lib.dr.iastate.edu/etd/18341 This Thesis is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Photochemical generation of electron poor reactive intermediates: Photochemistry of S- alkoxy dibenzothiophenium tetrafluoroborates, N-alkoxy pyridinium perchlorates, and Sulfonium ylides by Jagadeesh Kolattoor A dissertation submitted to the graduate faculty in partial fulfillment of requirements for the degree of DOCTOR OF PHILOSOPHY Major: Organic Chemistry Program of Study Committee: William S. Jenks, Major Professor Arthur Winter Brett VanVeller Igor Slowing Marek Pruski The student author, whose presentation of the scholarship herein was approved by the program of study committee, is solely responsible for the content of this dissertation. The Graduate College will ensure this dissertation is globally accessible and will not permit alterations after a degree is conferred. Iowa State University Ames, Iowa 2020 Copyright © Jagadeesh Kolattoor, 2020. All rights reserved. -
Introduction to Alkenes and Alkynes in an Alkane, All Covalent Bonds
Introduction to Alkenes and Alkynes In an alkane, all covalent bonds between carbon were σ (σ bonds are defined as bonds where the electron density is symmetric about the internuclear axis) In an alkene, however, only three σ bonds are formed from the alkene carbon -the carbon thus adopts an sp2 hybridization Ethene (common name ethylene) has a molecular formula of CH2CH2 Each carbon is sp2 hybridized with a σ bond to two hydrogens and the other carbon Hybridized orbital allows stronger bonds due to more overlap H H C C H H Structure of Ethylene In addition to the σ framework of ethylene, each carbon has an atomic p orbital not used in hybridization The two p orbitals (each with one electron) overlap to form a π bond (p bonds are not symmetric about the internuclear axis) π bonds are not as strong as σ bonds (in ethylene, the σ bond is ~90 Kcal/mol and the π bond is ~66 Kcal/mol) Thus while σ bonds are stable and very few reactions occur with C-C bonds, π bonds are much more reactive and many reactions occur with C=C π bonds Nomenclature of Alkenes August Wilhelm Hofmann’s attempt for systematic hydrocarbon nomenclature (1866) Attempted to use a systematic name by naming all possible structures with 4 carbons Quartane a alkane C4H10 Quartyl C4H9 Quartene e alkene C4H8 Quartenyl C4H7 Quartine i alkine → alkyne C4H6 Quartinyl C4H5 Quartone o C4H4 Quartonyl C4H3 Quartune u C4H2 Quartunyl C4H1 Wanted to use Quart from the Latin for 4 – this method was not embraced and BUT has remained Used English order of vowels, however, to name the groups -
Chem 51B Chapter 15 Notes
Lecture Notes Chem 51B S. King Chapter 15 Radical Reactions I. Introduction A radical is a highly reactive intermediate with an unpaired electron. Radicals are involved in oxidation reactions, combustion reactions, and biological reactions. Structure: compare with: compare with: Stability: Free radicals and carbocations are both electron deficient and they follow a similar order of stability: R R H H , > R C > R C > R C > H C R H H H • like carbocations, radicals can be stabilized by resonance. H H H H C C C C H C CH3 H C CH3 H H • unlike carbocations, no rearrangements are observed in free radical reactions. Q. How are free radicals formed? A. Free radicals are formed when bonds break homolytically: 103 Look @ the arrow pushing: Notice the fishhook arrow! It shows movement of a single electron: Compare with heterolytic bond cleavage: A double-headed arrow shows movement of a pair of electrons: Nomenclature: bromide ion bromine atom Bromine (molecule) II. General Features of Radical Reactions Radicals are formed from covalent bonds by adding energy in the form of heat or light (hν). Some radical reactions are carried out in the presence of radical initiators, which contain weak bonds that readily undergo homolysis. The most common radical initiators are peroxides (ROOR), which contain the weak O−O bond. A. Common Reactions of Radicals: Radicals undergo two common reactions: they react with σ-bonds and they add to π-bonds. 1. Reaction of a Radical X• with a C−H bond A radical X• abstracts a H atom from a C−H bond to form H−X and a carbon radical: 104 2. -
Some Problems Relating to Chain Reactions and to the Theory of Combustion
N IKOLAI N . S E M E N O V Some problems relating to chain reactions and to the theory of combustion Nobel Lecture, December 11, 1956 I should like to report here on researches into the field of chemical kinetics and the processes of combustion conducted over the last 20-30 years, firstly in my laboratory at the Leningrad Physical-Technical Institute and then in the Institute of Chemical Physics in the Academy of Sciences. These re- searches represent the outcome of many years’ endeavours by a large group of scientific collaborators, many of whom have now become well-known authorities and leaders in individual branches of scientific learning. There can be no doubt that it is indeed thanks to the joint work, thanks to the continual mutual help, and at the same time thanks to the personal initiative of some members of our group that we succeeded in achieving the results which have been valued so highly here. Successful exchanges of views and friendly discussions with learned men in other countries, particularly with Sir Cyril Hinshelwood, contributed much to the development of these researches and, particularly in the initial stage, to the development of new ideas. From our own experience, we have come to the conclusion that only the joint activity of men of learning in various countries can create conditions under which science can achieve successful further development. Our investigations can be divided into two different groups, which are however closely linked with each other: (I) the application of chemical kinetics to problems relating to the theory of combustion and explosion processes; (2) the mechanism of chemical reactions, particularly chain reactions. -
Chemical Kinetics 1.0 Objectives, Scope, Required Reading & Assignment Schedule
Module 2: Chemical Kinetics 1.0 Objectives, Scope, Required Reading & Assignment Schedule Objectives By the end of this module, students should be able to: • Identify variables that influence the rate at which chemical reactions proceed • Compose a rate expression for a given reaction • Define simple and complex reactions • Understand the Arrhenius Rate Expression • Explain the difference between 1st, 2nd, and 3rd order reactions • Define chain reactions • Understand chain branching explosions • Understand the theory of homogeneous ignition of gases • Understand the Frank-Kamenetski analysis and how it can be utilized for understanding a materials propensity to self-heat and spontaneously ignite Scope • Analysis of chemical kinetics and reaction rates • Analysis of ignition pertaining to gases • Analysis of self-heating and spontaneous ignition Reading Assignments • Turns: Chapter 4 • Drysdale: Chapter 6.1, Chapter 8.1 Assignment Schedule Three problems worth 10 points total are to be completed and submitted online. There is also an extra credit problem available (4 points). See the last page of this module for more details. There are exercises within the module that should be attempted by the student, these will not count toward your grade. The discussion question in 6.1 (Self-heating) of the module will count towards your class participation grade. 2.0 Background In Module 1, we learned about the chemical thermodynamics that govern combustion. Thermodynamics determines equilibrium in a system and, therefore, establishes the direction Module 2: Chemical Kinetics that the system wants to go. For example, as we saw, thermodynamics determines adiabatic flame temperature, a limiting temperature that is virtually never achieved in practice. -
Reactive Intermediates for Interactome Mapping
Chem Soc Rev View Article Online TUTORIAL REVIEW View Journal Reactive intermediates for interactome mapping a a b Cite this: DOI: 10.1039/d0cs01366h Ciaran P. Seath, Aaron D. Trowbridge, Tom W. Muir * and David W. C. MacMillan*a The interactions of biomolecules underpin all cellular processes, and the understanding of their dynamic interplay can lead to significant advances in the treatment of disease through the identification of novel therapeutic strategies. Protein–protein interactions (PPIs) in particular play a vital role within this arena, providing the basis for the majority of cellular signalling pathways. Despite their great importance, the elucidation of weak or transient PPIs that cannot be identified by immunoprecipitation remains a significant challenge, particularly in a disease relevant cellular environment. Recent approaches towards this goal have utilized the in situ generation of high energy intermediates that cross-link with neighboring proteins, Received 1st November 2020 providing a snapshot of the biomolecular makeup of the local area or microenvironment, termed the DOI: 10.1039/d0cs01366h interactome. In this tutorial review, we discuss these reactive intermediates, how they are generated, and the impact they have had on the discovery of new biology. Broadly, we believe this strategy has the rsc.li/chem-soc-rev potential to significantly accelerate our understanding of PPIs and how they affect cellular physiology. Key learning points 1. Protein–protein interactions are traditionally difficult to identify. 2. Protein–protein and protein–nuclei acid interactions underpin many cellular processes. 3. Reactive intermediates such as activated esters, radicals, and carbenes can cross link with proteins. 4. Proximity labelling can be applied in many cellular contexts to investigate fundamental biological pathways. -
Relativistic Runaway Electron Avalanches Within Complex Thunderstorm Electric field Structures
Relativistic runaway electron avalanches within complex thunderstorm electric field structures E. Stadnichuka,b,∗, E. Svechnikovad, A. Nozika,e, D. Zemlianskayaa,c, T. Khamitova,c, M. Zelenyya,c, M. Dolgonosovb,f aMoscow Institute of Physics and Technology - 1 \A" Kerchenskaya st., Moscow, 117303, Russian Federation bHSE University - 20 Myasnitskaya ulitsa, Moscow 101000 Russia cInstitute for Nuclear Research of RAS - prospekt 60-letiya Oktyabrya 7a, Moscow 117312 dInstitute of Applied Physics of RAS - 46 Ul'yanov str., 603950, Nizhny Novgorod, Russia eJetBrains Research - St. Petersburg, st. Kantemirovskaya, 2, 194100 fSpace Research Institute of RAS, 117997, Moscow, st. Profsoyuznaya 84/32 Abstract Relativistic runaway electron avalanches (RREAs) are generally accepted as a source of thunderstorms gamma-ray radiation. Avalanches can multiply in the electric field via the relativistic feedback mechanism based on processes with gamma-rays and positrons. This paper shows that a non-uniform electric field geometry can lead to the new RREAs multiplication mechanism - \reactor feed- back", due to the exchange of high-energy particles between different accelerat- ing regions within a thundercloud. A new method for the numerical simulation of RREA dynamics within heterogeneous electric field structures is proposed. The developed analytical description and the numerical simulation enables us to derive necessary conditions for TGF occurrence in the system with the reactor feedback Observable properties of TGFs influenced by the proposed mechanism are discussed. Keywords: relativistic runaway electron avalanches, terrestrial gamma-ray flash, thunderstorm ground enhancement, gamma-glow, thunderstorm, arXiv:2105.02818v1 [physics.ao-ph] 6 May 2021 relativistic feedback, reactor feedback ∗Egor Stadnichuk Email address: [email protected] (E.