Genetics: Early Online, published on October 11, 2019 as 10.1534/genetics.119.302749 Comparative genomics and transcriptomics to analyze fruiting body development in filamentous ascomycetes Ramona Lütkenhaus*, Stefanie Traeger*, Jan Breuer*, Laia Carreté‡, Alan Kuo†, Anna Lipzen†, Jasmyn Pangilinan†, David Dilworth†, Laura Sandor†, Stefanie Pöggeler§, Toni Gabaldón‡,**,††, Kerrie Barry†, Igor V. Grigoriev†,†††, Minou Nowrousian* *Lehrstuhl für Molekulare und Zelluläre Botanik, Ruhr-Universität Bochum, Bochum, Germany †U.S. Department of Energy Joint Genome Institute, Walnut Creek, California, USA ‡Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), Barcelona, Spain §Institute of Microbiology and Genetics, Department of Genetics of Eukaryotic Microorganisms, Georg-August University, Göttingen, Germany **Universitat Pompeu Fabra (UPF), Barcelona, Spain ††Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain †††Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, California, USA 1 Copyright 2019. running title: Ascomycete fruiting body development key words: fruiting body development, Ascodesmis nigricans, Sordaria macrospora, Pyronema confluens, comparative transcriptomics corresponding author: Dr. Minou Nowrousian Lehrstuhl für Molekulare und Zelluläre Botanik Ruhr-Universität Bochum ND 7/176 Universitätsstr. 150 44780 Bochum Germany phone +49 234 3224588 email
[email protected] 2 ABSTRACT Many filamentous ascomycetes develop three-dimensional fruiting