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Peziza and Pezizaceae Inferred from Multiple Nuclear Genes: RPB2, -Tubulin, and LSU Rdna
Molecular Phylogenetics and Evolution 36 (2005) 1–23 www.elsevier.com/locate/ympev Evolutionary relationships of the cup-fungus genus Peziza and Pezizaceae inferred from multiple nuclear genes: RPB2, -tubulin, and LSU rDNA Karen Hansen ¤, Katherine F. LoBuglio, Donald H. PWster Harvard University Herbaria, Cambridge, MA 02138, USA Received 5 May 2004; revised 17 December 2004 Available online 22 April 2005 Abstract To provide a robust phylogeny of Pezizaceae, partial sequences from two nuclear protein-coding genes, RPB2 (encoding the sec- ond largest subunit of RNA polymerase II) and -tubulin, were obtained from 69 and 72 specimens, respectively, to analyze with nuclear ribosomal large subunit RNA gene sequences (LSU). The three-gene data set includes 32 species of Peziza, and 27 species from nine additional epigeous and six hypogeous (truZe) pezizaceous genera. Analyses of the combined LSU, RPB2, and -tubulin data set using parsimony, maximum likelihood, and Bayesian approaches identify 14 Wne-scale lineages within Pezizaceae. Species of Peziza occur in eight of the lineages, spread among other genera of the family, conWrming the non-monophyly of the genus. Although parsimony analyses of the three-gene data set produced a nearly completely resolved strict consensus tree, with increased conWdence, relationships between the lineages are still resolved with mostly weak bootstrap support. Bayesian analyses of the three- gene data, however, show support for several more inclusive clades, mostly congruent with Bayesian analyses of RPB2. No strongly supported incongruence was found among phylogenies derived from the separate LSU, RPB2, and -tubulin data sets. The RPB2 region appeared to be the most informative single gene region based on resolution and clade support, and accounts for the greatest number of potentially parsimony informative characters within the combined data set, followed by the LSU and the -tubulin region. -
Doctoral Dissertation Template
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE METAGENOMIC INSIGHTS INTO MICROBIAL COMMUNITY RESPONSES TO LONG-TERM ELEVATED CO2 A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By QICHAO TU Norman, Oklahoma 2014 METAGENOMIC INSIGHTS INTO MICROBIAL COMMUNITY RESPONSES TO LONG-TERM ELEVATED CO2 A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Jizhong Zhou, Chair ______________________________ Dr. Meijun Zhu ______________________________ Dr. Fengxia (Felicia) Qi ______________________________ Dr. Michael McInerney ______________________________ Dr. Bradley Stevenson © Copyright by QICHAO TU 2014 All Rights Reserved. Acknowledgements At this special moment approaching the last stage for this degree, I would like to express my gratitude to all the people who encouraged me and helped me out through the past years. Dr. Jizhong Zhou, my advisor, is no doubt the most influential and helpful person in pursuing my academic goals. In addition to continuous financial support for the past six years, he is the person who led me into the field of environmental microbiology, from a background of bioinformatics and plant molecular biology. I really appreciated the vast training I received from the many interesting projects I got involved in, without which I would hardly develop my broad experienced background from pure culture microbial genomics to complex metagenomics. Dr. Zhili He, who played a role as my second advisor, is also the person I would like to thank most. Without his help, I could be still struggling working on those manuscripts lying in my hard drive. I definitely learned a lot from him in organizing massed results into logical scientific work—skills that will benefit me for life. -
Reproductive Isolation: Evidence That Ascobolus Stercorarius and Ascobolus Furfuraceus Are Two Species, Not One
Fungal Genetics Reports Volume 51 Article 10 Reproductive Isolation: Evidence that Ascobolus stercorarius and Ascobolus furfuraceus are two species, not one G. N. Bistis Drew University Follow this and additional works at: https://newprairiepress.org/fgr This work is licensed under a Creative Commons Attribution-Share Alike 4.0 License. Recommended Citation Bistis, G. N. (2004) "Reproductive Isolation: Evidence that Ascobolus stercorarius and Ascobolus furfuraceus are two species, not one," Fungal Genetics Reports: Vol. 51, Article 10. https://doi.org/ 10.4148/1941-4765.1140 This Regular Paper is brought to you for free and open access by New Prairie Press. It has been accepted for inclusion in Fungal Genetics Reports by an authorized administrator of New Prairie Press. For more information, please contact [email protected]. Reproductive Isolation: Evidence that Ascobolus stercorarius and Ascobolus furfuraceus are two species, not one Abstract Strains obtained from the germination of 30-40 year old ascospores from seven stocks of the heterothallicAscobolus stercorarius - furfuraceous complex were mated in all combinations. All st X st and fu X fu pairings were fertile (ascospores) whereas all st X fu pairings were sterile (no ascospores). Based on this reproductive isolation between st and fu strains I conclude that the complex consists of two species. The block that segregated the two species is probably some stage in the establishment of the dikaryotic phase in ascogenous hyphae. One hypothesis is that this block is at the stage of nuclear recognition. This regular paper is available in Fungal Genetics Reports: https://newprairiepress.org/fgr/vol51/iss1/10 Bistis: Reproductive Isolation: Evidence that Ascobolus stercorarius and Number 51, 2004 23 Reproductive Isolation: Evidence that Ascobolus stercorarius and Ascobolus furfuraceus are two species, not one. -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
Mantar Dergisi
11 6845 - Volume: 20 Issue:1 JOURNAL - E ISSN:2147 - April 20 e TURKEY - KONYA - FUNGUS Research Center JOURNAL OF OF JOURNAL Selçuk Selçuk University Mushroom Application and Selçuk Üniversitesi Mantarcılık Uygulama ve Araştırma Merkezi KONYA-TÜRKİYE MANTAR DERGİSİ E-DERGİ/ e-ISSN:2147-6845 Nisan 2020 Cilt:11 Sayı:1 e-ISSN 2147-6845 Nisan 2020 / Cilt:11/ Sayı:1 April 2020 / Volume:11 / Issue:1 SELÇUK ÜNİVERSİTESİ MANTARCILIK UYGULAMA VE ARAŞTIRMA MERKEZİ MÜDÜRLÜĞÜ ADINA SAHİBİ PROF.DR. GIYASETTİN KAŞIK YAZI İŞLERİ MÜDÜRÜ DR. ÖĞR. ÜYESİ SİNAN ALKAN Haberleşme/Correspondence S.Ü. Mantarcılık Uygulama ve Araştırma Merkezi Müdürlüğü Alaaddin Keykubat Yerleşkesi, Fen Fakültesi B Blok, Zemin Kat-42079/Selçuklu-KONYA Tel:(+90)0 332 2233998/ Fax: (+90)0 332 241 24 99 Web: http://mantarcilik.selcuk.edu.tr http://dergipark.gov.tr/mantar E-Posta:[email protected] Yayın Tarihi/Publication Date 27/04/2020 i e-ISSN 2147-6845 Nisan 2020 / Cilt:11/ Sayı:1 / / April 2020 Volume:11 Issue:1 EDİTÖRLER KURULU / EDITORIAL BOARD Prof.Dr. Abdullah KAYA (Karamanoğlu Mehmetbey Üniv.-Karaman) Prof.Dr. Abdulnasır YILDIZ (Dicle Üniv.-Diyarbakır) Prof.Dr. Abdurrahman Usame TAMER (Celal Bayar Üniv.-Manisa) Prof.Dr. Ahmet ASAN (Trakya Üniv.-Edirne) Prof.Dr. Ali ARSLAN (Yüzüncü Yıl Üniv.-Van) Prof.Dr. Aysun PEKŞEN (19 Mayıs Üniv.-Samsun) Prof.Dr. A.Dilek AZAZ (Balıkesir Üniv.-Balıkesir) Prof.Dr. Ayşen ÖZDEMİR TÜRK (Anadolu Üniv.- Eskişehir) Prof.Dr. Beyza ENER (Uludağ Üniv.Bursa) Prof.Dr. Cvetomir M. DENCHEV (Bulgarian Academy of Sciences, Bulgaristan) Prof.Dr. Celaleddin ÖZTÜRK (Selçuk Üniv.-Konya) Prof.Dr. Ertuğrul SESLİ (Trabzon Üniv.-Trabzon) Prof.Dr. -
New Records of Aspergillus Allahabadii and Penicillium Sizovae
MYCOBIOLOGY 2018, VOL. 46, NO. 4, 328–340 https://doi.org/10.1080/12298093.2018.1550169 RESEARCH ARTICLE Four New Records of Ascomycete Species from Korea Thuong T. T. Nguyen, Monmi Pangging, Seo Hee Lee and Hyang Burm Lee Division of Food Technology, Biotechnology and Agrochemistry, College of Agriculture & Life Sciences, Chonnam National University, Gwangju, Korea ABSTRACT ARTICLE HISTORY While evaluating fungal diversity in freshwater, grasshopper feces, and soil collected at Received 3 July 2018 Dokdo Island in Korea, four fungal strains designated CNUFC-DDS14-1, CNUFC-GHD05-1, Revised 27 September 2018 CNUFC-DDS47-1, and CNUFC-NDR5-2 were isolated. Based on combination studies using Accepted 28 October 2018 phylogenies and morphological characteristics, the isolates were confirmed as Ascodesmis KEYWORDS sphaerospora, Chaetomella raphigera, Gibellulopsis nigrescens, and Myrmecridium schulzeri, Ascomycetes; fecal; respectively. This is the first records of these four species from Korea. freshwater; fungal diversity; soil 1. Introduction Paraphoma, Penicillium, Plectosphaerella, and Stemphylium [7–11]. However, comparatively few Fungi represent an integral part of the biomass of any species of fungi have been described [8–10]. natural environment including soils. In soils, they act Freshwater nourishes diverse habitats for fungi, as agents governing soil carbon cycling, plant nutri- such as fallen leaves, plant litter, decaying wood, tion, and pathology. Many fungal species also adapt to aquatic plants and insects, and soils. Little -
Henry Dissing, 31. March 1931 – 10. December 2009
Henry Dissing, 31. March 1931 – 10. December 2009 Thomas LÆSSØE Department of Biology, University of Copenhagen Universitetsparken 15 DK-2100 Copenhagen Ø [email protected] Ascomycete.org, 2 (4) : 3-6. Summary: Biography of Henry Dissing, Danish mycologist, specialist of Pezizales, died Février 2011 in December 2009. Keywords: Tribute, Danish mycologist, University of Copenhagen, Ascomycota. Résumé : biographie d’Henry Dissing, mycologue danois, spécialiste des Pezizales, dé- cédé en décembre 2009. Mots-clés : hommage, mycologue danois, université de Copenhague, Ascomycota. Henry was born in Jutland, in a small village, where he was association was with Sigmund Sivertsen in Norway. Throu- expected to follow in his father’s footsteps as a potter. He ghout, he trained Master students in all sorts of mycological chose a completely different career but did support his early topics, and one of them, Karen Hansen, continues his work education by working at the royal porcelain factory in Co- on the Pezizales (from Stockholm). Others are employed in penhagen. After that, he studied at Copenhagen University the biotechnological industry or teach at high school. A long where he started his biology studies in 1960. He very soon lasting teaching effort was the mycological field courses held became interested in fungi and quickly became part of the from 1965-2009 at the Kristiansminde Field Centre, where group around Morten Lange at the newly established “Insti- Henry participated in most courses until retirement, and tut for Sporeplanter”, where Lise Hansen was another core more than one thousand students got their mycological field member. Henry became the ascomycote person and Morten training during this period, including a lot of Norwegian stu- dealt with agarics and also collaborated with Henry on “Gas- dents. -
MMA MASTERLIST - Sorted by Taxonomy
MMA MASTERLIST - Sorted by Taxonomy Sunday, December 10, 2017 Page 1 of 86 Amoebozoa Mycetomycota Protosteliomycetes Protosteliales Ceratiomyxaceae Ceratiomyxa fruticulosa Ceratiomyxa fruticulosa var. fruticulosa Ceratiomyxa fruticulosa var. poroides Ceratiomyxa sp. Mycetozoa Myxogastrea Incertae Sedis in Myxogastrea Liceaceae Licea minima Stemonitidaceae Brefeldia maxima Comatricha pulchella Comatricha sp. Comatricha typhoides Stemonitis axifera Stemonitis fusca Stemonitis sp. Stemonitis splendens Chromista Oomycota Incertae Sedis in Oomycota Peronosporales Peronosporaceae Plasmopara viticola Pythiaceae Pythium deBaryanum Oomycetes Saprolegniales Saprolegniaceae Saprolegnia sp. Peronosporea Albuginales Albuginaceae Albugo candida Fungus Ascomycota Ascomycetes Boliniales Boliniaceae Camarops petersii Capnodiales Capnodiaceae Scorias spongiosa Diaporthales Gnomoniaceae Cryptodiaporthe corni Sydowiellaceae Stegophora ulmea Valsaceae Cryphonectria parasitica Valsella nigroannulata Elaphomycetales Elaphomycetaceae Elaphomyces granulatus Elaphomyces sp. Erysiphales Erysiphaceae Erysiphe aggregata Erysiphe cichoracearum Erysiphe polygoni Microsphaera extensa Phyllactinia guttata Podosphaera clandestina Uncinula adunca Uncinula necator Hysteriales Hysteriaceae Glonium stellatum Leotiales Bulgariaceae Crinula caliciiformis Crinula sp. Mycocaliciales Mycocaliciaceae Phaeocalicium polyporaeum Peltigerales Collemataceae Leptogium cyanescens Lobariaceae Sticta fimbriata Nephromataceae Nephroma helveticum Peltigeraceae Peltigera evansiana Peltigera -
Orbilia Ultrastructure, Character Evolution and Phylogeny of Pezizomycotina
Mycologia, 104(2), 2012, pp. 462–476. DOI: 10.3852/11-213 # 2012 by The Mycological Society of America, Lawrence, KS 66044-8897 Orbilia ultrastructure, character evolution and phylogeny of Pezizomycotina T.K. Arun Kumar1 INTRODUCTION Department of Plant Biology, University of Minnesota, St Paul, Minnesota 55108 Ascomycota is a monophyletic phylum (Lutzoni et al. 2004, James et al. 2006, Spatafora et al. 2006, Hibbett Rosanne Healy et al. 2007) comprising three subphyla, Taphrinomy- Department of Plant Biology, University of Minnesota, cotina, Saccharomycotina and Pezizomycotina (Su- St Paul, Minnesota 55108 giyama et al. 2006, Hibbett et al. 2007). Taphrinomy- Joseph W. Spatafora cotina, according to the current classification (Hibbett Department of Botany and Plant Pathology, Oregon et al. 2007), consists of four classes, Neolectomycetes, State University, Corvallis, Oregon 97331 Pneumocystidiomycetes, Schizosaccharomycetes, Ta- phrinomycetes, and an unplaced genus, Saitoella, Meredith Blackwell whose members are ecologically and morphologically Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana 70803 highly diverse (Sugiyama et al. 2006). Soil Clone Group 1, poorly known from geographically wide- David J. McLaughlin spread environmental samples and a single culture, Department of Plant Biology, University of Minnesota, was suggested as a fourth subphylum (Porter et al. St Paul, Minnesota 55108 2008). More recently however the group has been described as a new class of Taphrinomycotina, Archae- orhizomycetes (Rosling et al. 2011), based primarily on Abstract: Molecular phylogenetic analyses indicate information from rRNA sequences. The mode of that the monophyletic classes Orbiliomycetes and sexual reproduction in Taphrinomycotina is ascogen- Pezizomycetes are among the earliest diverging ous without the formation of ascogenous hyphae, and branches of Pezizomycotina, the largest subphylum except for the enigmatic, apothecium-producing of the Ascomycota. -
Coprophilous Fungal Community of Wild Rabbit in a Park of a Hospital (Chile): a Taxonomic Approach
Boletín Micológico Vol. 21 : 1 - 17 2006 COPROPHILOUS FUNGAL COMMUNITY OF WILD RABBIT IN A PARK OF A HOSPITAL (CHILE): A TAXONOMIC APPROACH (Comunidades fúngicas coprófilas de conejos silvestres en un parque de un Hospital (Chile): un enfoque taxonómico) Eduardo Piontelli, L, Rodrigo Cruz, C & M. Alicia Toro .S.M. Universidad de Valparaíso, Escuela de Medicina Cátedra de micología, Casilla 92 V Valparaíso, Chile. e-mail <eduardo.piontelli@ uv.cl > Key words: Coprophilous microfungi,wild rabbit, hospital zone, Chile. Palabras clave: Microhongos coprófilos, conejos silvestres, zona de hospital, Chile ABSTRACT RESUMEN During year 2005-through 2006 a study on copro- Durante los años 2005-2006 se efectuó un estudio philous fungal communities present in wild rabbit dung de las comunidades fúngicas coprófilos en excementos de was carried out in the park of a regional hospital (V conejos silvestres en un parque de un hospital regional Region, Chile), 21 samples in seven months under two (V Región, Chile), colectándose 21 muestras en 7 meses seasonable periods (cold and warm) being collected. en 2 períodos estacionales (fríos y cálidos). Un total de Sixty species and 44 genera as a total were recorded in 60 especies y 44 géneros fueron detectados en el período the sampling period, 46 species in warm periods and 39 de muestreo, 46 especies en los períodos cálidos y 39 en in the cold ones. Major groups were arranged as follows: los fríos. La distribución de los grandes grupos fue: Zygomycota (11,6 %), Ascomycota (50 %), associated Zygomycota(11,6 %), Ascomycota (50 %), géneros mitos- mitosporic genera (36,8 %) and Basidiomycota (1,6 %). -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
Ascomyceteorg 02-04 Ascomyceteorg
The genus Ascodesmis (Pezizales) in Norway Roy KRISTIANSEN PO Box 32 NO-1650 Sellebakk [email protected] Ascomycete.org, 2 (4) : 65-69. Summary: This report presents the four species of Ascodesmis (Ascomycota, Pezi- Février 2011 zales) recorded in Norway, and an updated map of their distribution. All are copro- philous, and occur on dung of both carnivorous and herbivorous animals. The species are illustrated by scanning electronmicrography of their ascospores, which is the main distinguishing character at species level. Systematics are briefly discussed, and As- codesmis is genetically close to the genus Eleutherascus. Keywords: Ascomycota, Pezizales, Ascodesmidaceae, Ascodesmis, Norway, distribu- tion. Ascodesmis Tiegh. (Ascodesmidaceae J. Schröt.), is one of and the differentiation of the primary and secondary ascos- the smallest genera in the Pezizales, comprising six species pore wall is equal in every detail in both genera (BRUMMELEN, world-wide, and all are strictly coprophilous. They are rarely 1989). This confirms that Eleutherascus is genetically clo- collected, but probably overlooked or have escaped atten- sest to Ascodesmis and that it should be placed in the As- tion because of their size, which hardly exceeds 0.5 mm in codesmidaceae. The similarity was later demonstrated by diameter, or they are really rare. The ascomata are rather phylogenetic studies, and which indicated also that there is simple in anatomy and consist of a bunch of asci with a li- a close relationship between Ascodesmidaceae and Pyro- mited number of colourless paraphyses, and almost no ex- nemataceae (PERRY et al., 2007), and confirms the close re- cipulum, with only a few basal cells.