Supplemental Table for “An expanded collection and refined consensus model of glmS ribozymes”

Phillip J. McCown1, Adam Roth2, Ronald R. Breaker1,2,3

1Department of Molecular, Cellular and Developmental Biology, 2Howard Hughes Medical Institute, and 3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520-8103, USA

Dr. Ronald R. Breaker Tel: (203) 432-9389 Fax: (203) 432-0753 E-mail: [email protected]

Phillip J. McCown E-mail: [email protected]

Dr. Adam Roth E-mail: [email protected]

Running title: New glmS ribozymes

Keywords: glucosamine-6-phosphate (GlcN6P); glutamine synthetase; Infernal; phosphoglucosamine mutase; riboswitch; self-cleaving ribozyme

Supplemental Table 1. A list of that carry glmS ribozymes. Nucleotide positions of glmS ribozymes include 10 nucleotides on each end in additional to the nucleotides expected to form the ribozyme. The strand of DNA for the ribozyme coordinates is not given, but can be inferred by examination of the nucleotide positions. Thermobaculum is a without a assignment and is noted as “Thermobaculum” within the phylum assignments. Representatives highlighted in yellow are present in human pathogens. glmS Riboswitch Accession # Nucleotide Position Phylum

Rubrobacter xylanophilus DSM 9941 NC_008148.1 834457-834619 Chloroflexus aggregans DSM 9485 NC_011831.1 3930324-3930112 Chloroflexus sp. Y-400-f1 NC_012032.1 599396-599607 Chloroflexi Herpetosiphon aurantiacus ATCC 23779 NC_009972.1 4951142-4951427 Chloroflexi Roseiflexus castenholzii DSM 13941 NC_009767.1 1561093-1560880 Chloroflexi Roseiflexus sp. RS-1 NC_009523.1 5090849-5091958 Chloroflexi thermophilus DSM 20745 NZ_ABUQ01000001.1 659983-660153 Chloroflexi Thermomicrobium roseum DSM 5159 NC_011959.1 734158-733989 Chloroflexi deserti VCD115 NC_012526.1 2595187-2594989 Deinococcus-Thermus Deinococcus geothermalis DSM 11300 NC_008025.1 11682-11482 Deinococcus-Thermus R1 NC_001263.1 302515-302747 Deinococcus-Thermus ruber DSM 1279 NZ_ABUF01000001.1 133820-133596 Deinococcus-Thermus Meiothermus silvanus DSM 9946 NZ_ABUG01000002.1 349321-349547 Deinococcus-Thermus Y51MC23 NZ_ABVK02000005.1 59231-59031 Deinococcus-Thermus HB27 NC_005835.1 1457398-1457603 Deinococcus-Thermus Thermus thermophilus HB8 NC_006461.1 1781664-1781865 Deinococcus-Thermus Truepera radiovictrix DSM 17093 NC_014221.1 1452698-1452921 Deinococcus-Thermus Dictyoglomus thermophilum H-6-12 NC_011297.1 869033-869205 Dictyoglomi Dictyoglomus turgidum DSM 6724 NC_011661.1 1036419-1036591 Dictyoglomi Environmental Sample JCVI_SCAF_1096627626282 1014-1171 Environmental Environmental Sample NCBI_BBAY_READ_1106105084023 10-166 Environmental Environmental Sample JCVI_SCAF_1096627702206 1018-861 Environmental Environmental Sample JCVI_SCAF_1096627530586 1021-1160 Environmental Environmental Sample JCVI_SCAF_1096627530586 1021-1178 Environmental Environmental Sample NCBI_BBAY_READ_1106073079910 1021-860 Environmental Environmental Sample NCBI_BBAY_READ_1106073079910 1021-867 Environmental Environmental Sample JCVI_SCAF_1096627389973 1042-885 Environmental Environmental Sample BAAY01004508.1 1046-1200 Environmental Environmental Sample BAAY01004508.1 1046-1208 Environmental Environmental Sample JCVI_SCAF_1101668558568 1048-886 Environmental Environmental Sample JCVI_SCAF_1101668558568 1048-890 Environmental Environmental Sample NCBI_BBAY_READ_1105731255557 1058-904 Environmental Environmental Sample JCVI_SCAF_1101668494034 1144-987 Environmental Environmental Sample JCVI_SCAF_1101667360363 1-151 Environmental Environmental Sample BAAY01005449.1 1-160 Environmental Environmental Sample JCVI_SCAF_1096627129878 1180-1337 Environmental Environmental Sample JCVI_SCAF_1101668304623 1195-1038 Environmental Environmental Sample JCVI_SCAF_1101668497429 1195-1038 Environmental Environmental Sample JCVI_SCAF_1101668304623 1195-1050 Environmental Environmental Sample JCVI_SCAF_1101668117279 1199-1074 Environmental Environmental Sample JCVI_SCAF_1101668117279 1199-1074 Environmental Environmental Sample JCVI_SCAF_1096627074371 120-270 Environmental Environmental Sample JCVI_SCAF_1096627074371 120-277 Environmental Environmental Sample JCVI_SCAF_1096626659782 1211-1368 Environmental Environmental Sample BABD01006914.1 1227-1423 Environmental Environmental Sample JCVI_SCAF_1096627390452 125640-125797 Environmental Environmental Sample NCBI_BBAY_READ_1106073051462 130-2 Environmental Environmental Sample NCBI_BBAY_READ_1106073051462 130-9 Environmental Environmental Sample taComm3_C6645 1309-1603 Environmental Environmental Sample JCVI_SCAF_1096628402690 1339-1182 Environmental Environmental Sample JCVI_SCAF_1096627509286 1372-1216 Environmental Environmental Sample JCVI_SCAF_1096627569502 1378-1535 Environmental Environmental Sample BABG01002602.1 1393-1587 Environmental Environmental Sample BABG01002602.1 1393-1590 Environmental Environmental Sample JCVI_SCAF_1096627379958 1417-1493 Environmental Environmental Sample JCVI_SCAF_1096627379958 1417-1574 Environmental Environmental Sample BISONP_C10886 1461-1674 Environmental Environmental Sample BAAV01001407.1 1484-1650 Environmental Environmental Sample BAAV01001407.1 1484-1669 Environmental Environmental Sample JCVI_SCAF_1096626721928 1551-1708 Environmental Environmental Sample JCVI_SCAF_1096627724495 1561-1404 Environmental Environmental Sample BABG01000670.1 1644-1800 Environmental Environmental Sample BABG01000670.1 1644-1840 Environmental Environmental Sample JCVI_SCAF_1101668546709 165-8 Environmental Environmental Sample JCVI_SCAF_1096626873264 1693-1537 Environmental Environmental Sample JCVI_SCAF_1096626873264 1693-1550 Environmental Environmental Sample JCVI_SCAF_1096627300508 1740-1584 Environmental Environmental Sample JCVI_SCAF_1096627300508 1740-1590 Environmental Environmental Sample BAAX01029836.1 174-360 Environmental Environmental Sample BAAX01029836.1 174-370 Environmental Environmental Sample JCVI_SCAF_1096628173402 1762-1605 Environmental Environmental Sample JCVI_SCAF_1101668165627 17-79 Environmental Environmental Sample JCVI_SCAF_1101668165627 17-79 Environmental Environmental Sample JCVI_SCAF_1096627100108 1791-1948 Environmental Environmental Sample JCVI_SCAF_1096627514634 1816-1754 Environmental Environmental Sample BAAX01001155.1 1849-2000 Environmental Environmental Sample BAAX01001155.1 1849-2020 Environmental Environmental Sample JCVI_SCAF_1101668278218 185-28 Environmental Environmental Sample JCVI_SCAF_1096627069711 1862-1705 Environmental Environmental Sample BABA01005912.1 1884-1848 Environmental Environmental Sample BABA01005912.1 1884-1848 Environmental Environmental Sample taComm3_C10330 18905-18717 Environmental Environmental Sample BAAX01000133.1 1930-2090 Environmental Environmental Sample BAAX01000133.1 1930-2100 Environmental Environmental Sample BAAU01016423.1 196-18 Environmental Environmental Sample JCVI_SCAF_1101667155457 197-340 Environmental Environmental Sample JCVI_SCAF_1101667155457 197-353 Environmental Environmental Sample JCVI_SCAF_1096627323430 197-40 Environmental Environmental Sample JCVI_SCAF_1101668277692 198-41 Environmental Environmental Sample BABD01023909.1 200-358 Environmental Environmental Sample BABD01023909.1 200-360 Environmental Environmental Sample JCVI_SCAF_1096626917510 200-44 Environmental Environmental Sample BABB01000050.1 2059-1887 Environmental Environmental Sample BABB01000050.1 2059-1900 Environmental Environmental Sample soil_Contig41404 209-42 Environmental Environmental Sample JCVI_SCAF_1096626976292 21-178 Environmental Environmental Sample BAAY01005449.1 2-169 Environmental Environmental Sample JCVI_SCAF_1096626976292 21-97 Environmental Environmental Sample BABG01007711.1 227-65 Environmental Environmental Sample BABG01007711.1 227-80 Environmental Environmental Sample BAAX01002691.1 2416-2594 Environmental Environmental Sample BAAX01002691.1 2416-2600 Environmental Environmental Sample JCVI_SCAF_109662655060 273-132 Environmental Environmental Sample taComm3_FFOI6928_x1 276-462 Environmental Environmental Sample BAAU01000764.1 3007-3200 Environmental Environmental Sample BAAU01000764.1 3007-3203 Environmental Environmental Sample JCVI_SCAF_1096627870492 301-457 Environmental Environmental Sample JCVI_SCAF_1096628402605 306-450 Environmental Environmental Sample JCVI_SCAF_1096628302605 306-463 Environmental Environmental Sample JCVI_SCAF_1096627341207 309-153 Environmental Environmental Sample JCVI_SCAF_1096627924341 310-470 Environmental Environmental Sample JCVI_SCAF_1096627924341 310-474 Environmental Environmental Sample BISONQ_C805 313-526 Environmental Environmental Sample JCVI_SCAF_1096627170587 3231-3388 Environmental Environmental Sample NCBI_BBAY_READ_1106073088876 325-481 Environmental Environmental Sample hgutS8_s8_170046 326-482 Environmental Environmental Sample JCVI_SCAF_1096627188595 34066-33910 Environmental Environmental Sample BISONP_FGGH31677_b1 382-595 Environmental Environmental Sample BABF01000480.1 3881-3709 Environmental Environmental Sample BABF01000480.1 3881-3793 Environmental Environmental Sample BAAX01001227.1 401-575 Environmental Environmental Sample BAAX01001227.1 401-580 Environmental Environmental Sample wf2_AHAA9108_y1 417-232 Environmental Environmental Sample contig45086 417-531 Environmental Environmental Sample BABE01000473.1 42-199 Environmental Environmental Sample BABE01000473.1 42-200 Environmental Environmental Sample BAAY01000031.1 459-267 Environmental Environmental Sample BAAY01000031.1 459-280 Environmental Environmental Sample JCVI_SCAF_1096626632989 480-637 Environmental Environmental Sample JCVI_SCAF_1101667436298 482-639 Environmental Environmental Sample hsmat10_BHWZ6026_g1 496-278 Environmental Environmental Sample JCVI_SCAF_1096627095937 4987-5143 Environmental Environmental Sample BAAV01012581.1 509-650 Environmental Environmental Sample BAAV01012581.1 509-680 Environmental Environmental Sample JCVI_SCAF_1101667188530 538-695 Environmental Environmental Sample JCVI_SCAF_1101668231355 538-695 Environmental Environmental Sample JCVI_SCAF_1096626660123 564-407 Environmental Environmental Sample BABD01036340.1 580-409 Environmental Environmental Sample BABD01036340.1 580-410 Environmental Environmental Sample taComm3_FNHH33476_b1 585-746 Environmental Environmental Sample taComm3_FNHH53278_b1 590-423 Environmental Environmental Sample JCVI_SCAF_1101667101007 601-444 Environmental Environmental Sample JCVI_SCAF_1101667101007 601-450 Environmental Environmental Sample NCBI_BBAY_READ_1105731226257 620-776 Environmental Environmental Sample NCBI_BBAY_READ_1105609545791 622-466 Environmental Environmental Sample contig26485 626-785 Environmental Environmental Sample soil_XZS14467_g1 629-395 Environmental Environmental Sample lwComb_BCGO3429_y3 635-845 Environmental Environmental Sample taComm3_C7778 653-485 Environmental Environmental Sample JCVI_SCAF_1096626991399 675-832 Environmental Environmental Sample JCVI_SCAF_1096626172348 677-834 Environmental Environmental Sample BISONR_BXAS5715_y2 69-250 Environmental Environmental Sample JCVI_SCAF_1096627323884 698-541 Environmental Environmental Sample NCBI_READ_1113101563229 753-610 Environmental Environmental Sample NCBI_READ_1112079230354 757-615 Environmental Environmental Sample NCBI_BBAY_READ_1105731268678 774-931 Environmental Environmental Sample JCVI_SCAF_1101668492729 777-934 Environmental Environmental Sample JCVI_SCAF_1096627285068 7812-7920 Environmental Environmental Sample JCVI_SCAF_1096627285068 7812-7968 Environmental Environmental Sample BISONQ_BXBH53379_g1 793-579 Environmental Environmental Sample BISONQ_BXBH53379_g1 793-580 Environmental Environmental Sample JCVI_SCAF_1101668284301 803-960 Environmental Environmental Sample JCVI_SCAF_1096627376349 813-970 Environmental Environmental Sample BAAU01024082.1 851-974 Environmental Environmental Sample BAAU01024082.1 851-974 Environmental Environmental Sample NCBI_READ_1113216217415 9-163 Environmental Environmental Sample BAAW01002639.1 918-1080 Environmental Environmental Sample JCVI_SCAF_1096627389041 945-800 Environmental Environmental Sample NCBI_BBAY_READ_1106121035228 969-814 Environmental Environmental Sample JCVI_SCAF_1096628007661 991-856 Environmental Acidaminococcus fermentans DSM 20731 NC_013740 1063276-1063318 Acidaminococcus sp. D21 NZ_ACGB01000026.1 3696-3535 Firmicutes Alicyclobacillus acidocaldarius LAA1 NZ_ACCS01000015.1 33537-33367 Firmicutes Alicyclobacillus acidocaldarius subsp. Acidocaldarius DSM 446 NC_013205.1 2751603-2751433 Firmicutes Alkaliphilus metalliredigens QYMF NC_009633.1 4410900-4410725 Firmicutes Alkaliphilus oremlandii OhILAs NC_009922.1 3087412-3087232 Firmicutes Ammonifex degensii KC4 NC_013385.1 230764-230938 Firmicutes Anaerocellum thermophilum DSM 6725 NC_012034.1 2460996-2460790 Firmicutes hydrogenalis DSM 7454 NZ_ABXA01000031.1 97953-97800 Firmicutes Anaerococcus lactolyticus ATCC 51172 NZ_ABYO01000211.1 42713-42560 Firmicutes Anaerococcus prevotii DSM 20548 NC_013171.1 26073-26226 Firmicutes Anaerococcus tetradius ATCC 35098 NZ_ACGC01000114.1 26873-26719 Firmicutes Anaerococcus vaginalis ATCC 51170 NZ_ACXU01000002.1 33014-33167 Firmicutes Anaerofustis stercorihominis DSM 17244 NZ_ABIL02000006.1 1220278-1220455 Firmicutes Anaerostipes caccae DSM 14662 NZ_ABAX03000010.1 146278-146476 Firmicutes Anaerotruncus colihominis DSM 17241 NZ_ABGD02000034.1 167177-167341 Firmicutes Anoxybacillus flavithermus WK1 NC_011567.1 156743-156924 Firmicutes amyloliquefaciens FZB42 NC_009725.1 203857-204039 Firmicutes str. A0193 BAQ.Contig120 NZ_ABKF01000016.1 88384-88314 Firmicutes Bacillus anthracis str. A0248 NC_012659 157461-157506 Firmicutes Bacillus anthracis str. A0389 BAK.Contig135 NZ_ABLB01000017.1 87911-87841 Firmicutes Bacillus anthracis str. A0442 BAH.Contig166 NZ_ABKG01000006.1 215105-215035 Firmicutes Bacillus anthracis str. A0465 BAM.Contig98 NZ_ABLH01000011.1 110846-110776 Firmicutes Bacillus anthracis str. A0488 BAC.Contig131 NZ_ABJC01000015.1 7954-8024 Firmicutes Bacillus anthracis str. A1055 NZ_AAEO01000023.2 88424-88351 Firmicutes Bacillus anthracis str. A2012 Bant_02_1 NZ_AAAC02000001.1 697163-697223 Firmicutes Bacillus anthracis str. Ames NC_003997 157561-157606 Firmicutes Bacillus anthracis str. 'Ames Ancestor' NC_007530 157561-157606 Firmicutes Bacillus anthracis str. Australia 94 cont30 NZ_AAES01000019.1 7935-8008 Firmicutes Bacillus anthracis str. CDC 684 NC_012581 157434-157479 Firmicutes Bacillus anthracis str. Kruger B NZ_AAEQ01000020.2 87329-87256 Firmicutes Bacillus anthracis str. Sterne NC_005945 157562-157607 Firmicutes Bacillus anthracis str. Vollum cont42 NZ_AAEP01000041.1 6930-7003 Firmicutes Bacillus anthracis str. Western North America USA6153 NZ_AAER01000024.1 88435-88270 Firmicutes Bacillus anthracis Tsiankovskii-I gcontig_1106613453184 NZ_ABDN02000008.1 174324-174251 Firmicutes Bacillus cellulosilyticus DSM 2522 ctg 00115 NZ_ADFH01000093.1 6226-6274 Firmicutes 03BB102 NC_012472 163149-163194 Firmicutes Bacillus cereus 03BB108 gcontig_1112319162868 NZ_ABDM02000013.1 22335-22405 Firmicutes Bacillus cereus AH1271 NZ_ACMR01000007.1 7360-7525 Firmicutes Bacillus cereus AH187 NC_011658 163326-163371 Firmicutes Bacillus cereus AH603 NZ_ACMP01000006.1 7448-7613 Firmicutes Bacillus cereus AH621 NZ_ACLX01000005.1 7460-7625 Firmicutes Bacillus cereus AH676 NZ_ACMQ01000005.1 7384-7549 Firmicutes Bacillus cereus AH820 NC_011773 157570-157615 Firmicutes Bacillus cereus ATCC 10987 NC_003909 157563-157608 Firmicutes Bacillus cereus ATCC 14579 NC_004722.1 163174-163339 Firmicutes Bacillus cereus B4264 NC_011725 163335-163380 Firmicutes Bacillus cereus BDRD-ST26 NZ_ACMC01000004.1 7382-7547 Firmicutes Bacillus cereus E33L NC_006274 157551-157596 Firmicutes Bacillus cereus G9241 NZ_AAEK01000074.1 10289-10124 Firmicutes Bacillus cereus G9842 NC_011772 157454-157499 Firmicutes Bacillus cereus NVH0597-99 gcontig2_1106432853407 NZ_ABDK02000016.1 23837-23907 Firmicutes Bacillus cereus Q1 NC_011969 157385-157430 Firmicutes Bacillus cereus R309803 NZ_ACLY01000006.1 6534-6699 Firmicutes Bacillus cereus Rock 3-44 NZ_ACML01000016.1 6562-6728 Firmicutes Bacillus cereus Rock 4-18 NZ_ACMN01000005.1 7200-7366 Firmicutes Bacillus cereus W gcontig_1112319163074 NZ_ABCZ02000014.1 23323-23393 Firmicutes Bacillus clausii KSM-K16 NC_006582.1 270891-271056 Firmicutes Bacillus coagulans 36D1 NZ_AAWV02000001.1 1131700-1131498 Firmicutes Bacillus coahuilensis m4-4 NZ_ABFU01000006.2 7652-7821 Firmicutes Bacillus cytotoxicus NVH 391-98 NC_009674.1 163980-164146 Firmicutes Bacillus halodurans C-125 NC_002570.2 288764-288941 Firmicutes Bacillus licheniformis ATCC 14580 NC_006322.1 183150-183334 Firmicutes Bacillus licheniformis DSM 13 NC_006270.3 183197-183245 Firmicutes Bacillus megaterium DSM 319 NC_014103.1 166320-166475 Firmicutes Bacillus mycoides DSM 2048 NZ_ACMU01000006.1 7445-7610 Firmicutes Bacillus mycoides Rock1-4 NZ_ACMV01000018.1 2461-2627 Firmicutes Bacillus mycoides Rock3-17 NZ_ACMW01000006.1 7251-7417 Firmicutes Bacillus pseudofirmus OF4 NC_013791 1749524-1749664 Firmicutes Bacillus pseudomycoides DSM 12442 contig00089 NZ_ACMX01000161.1 22108-22047 Firmicutes Bacillus pumilus ATCC 7061 NZ_ABRX01000007.1 141500-141312 Firmicutes Bacillus pumilus SAFR-032 NC_009848.1 163023-163210 Firmicutes Bacillus selenitireducens MLS10 NZ_ABHZ01000001.1 233988-234159 Firmicutes Bacillus sp. B14905 NZ_AAXV01000005.1 182712-182671 Firmicutes Bacillus sp. B14905 NZ_AAXV01000005.1 182767-182585 Firmicutes Bacillus sp. NRRL B-14911 NZ_AAOX01000019.1 5610-5781 Firmicutes Bacillus sp. SG-1 NZ_ABCF01000019.1 12590-12767 Firmicutes Bacillus subtilis subsp. Subtilis str. 168 NC_000964.3 200015-200196 Firmicutes Bacillus subtilis subsp. Subtilis str. JH642 NZ_ABQM01000002.1 29994-30137 Firmicutes Bacillus subtilis subsp. Subtilis str. NCIB 3610 NZ_ABQL01000002.1 5775-5953 Firmicutes Bacillus subtilis subsp. Subtilis str. SMY NZ_ABQN01000003.1 5773-5951 Firmicutes IBL 200 NZ_ACNK01000004.1 7379-7561 Firmicutes Bacillus thuringiensis serovar andalousiensis BGSC 4AQ1 contig00407 NZ_ACNG01000007.1 7383-7456 Firmicutes Bacillus thuringiensis serovar berliner ATCC 10792 NZ_ACNF01000004.1 7250-7294 Firmicutes Bacillus thuringiensis serovar huazhongensis BGSC 4BD1 NZ_ACNI01000004.1 7419-7463 Firmicutes Bacillus thuringiensis serovar israelensis ATCC 35646 NZ_AAJM01000004.1 43595-43430 Firmicutes Bacillus thuringiensis serovar kurstaki str. T03a001 NZ_ACND01000004.1 7386-7551 Firmicutes Bacillus thuringiensis serovar kurstaki str. T03a001 NZ_ACND01000004.1 7423-7467 Firmicutes Bacillus thuringiensis serovar monterrey BGSC 4AJ1 contig 00009 NZ_ACNE01000005.1 7409-7482 Firmicutes Bacillus thuringiensis serovar pakistani str. T13001 NZ_ACNC01000004.1 7414-7458 Firmicutes Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1 contig 00003 NZ_ACNH01000005.1 7402-7475 Firmicutes Bacillus thuringiensis serovar pulsiensis BGSC 4CC1 contig00249 NZ_ACNJ01000005.1 7380-7453 Firmicutes Bacillus thuringiensis serovar tochigiensis BGSC 4Y1 contig00023 NZ_ACMY01000004.1 7391-7464 Firmicutes Bacillus thuringiensis str. Al Hakam NC_008600 163280-163325 Firmicutes Bacillus thuringiensis str. Konkukian str. 97-27 NC_005957 163283-163328 Firmicutes Bacillus thuringiesnsi serovar sotto str. T04001 NZ_ACNB01000004.1 6588-6632 Firmicutes Bacillus weihenstephanensis KBAB4 NC_01084.1 163230-163395 Firmicutes Brevibacillus brevis NBRC 100599 NC_012491.1 272882-273062 Firmicutes saccharolyticus DSM 8903 NC_009437.1 677414-677621 Firmicutes Candidatus Desulforudis audaxviator MP104C NC_010424.1 387917-388105 Firmicutes Carboxydothermus hydrogenoformans Z-2901 NC_007503.1 1796460-1796298 Firmicutes Catenibacterium mitsuokai DSM 15897 NZ_ACCK01000402.1 694-848 Firmicutes Catonella morbi ATCC 51271 NZ_ACIL02000003.1 34003-33841 Firmicutes Clostridiales bacterium 1_7_47FAA NZ_DS990263.1 566771-566970 Firmicutes acetobutylicum ATCC 824 NC_003030.1 179927-180084 Firmicutes Clostridium asparagiforme DSM 15981 NZ_ACCJ01000512.1 7457-7669 Firmicutes Clostridium bartlettii DSM 16795 NZ_ABEZ02000013.1 207930-207768 Firmicutes Clostridium beijerinckii NCIMB 8052 NC_009617.1 282160-282402 Firmicutes Clostridium bolteae ATCC BAA-613 NZ_ABCC02000033.1 44749-44548 Firmicutes Clostridium botulinum A str. ATCC 19397 NC_009697 3628809-3628772 Firmicutes Clostridium botulinum A str. ATCC 3502 NC_009495.1 3653039-3652693 Firmicutes Clostridium botulinum A str. Hall NC_009698 3525918-3525881 Firmicutes Clostridium botulinum A2 str. Kyoto NC_012563.1 3920941-3920595 Firmicutes Clostridium botulinum A3 str. Loch Maree NC_010520.1 3753403-3753245 Firmicutes Clostridium botulinum B str. Eklund 17B NC_010674.1 338285-338438 Firmicutes Clostridium botulinum B1 str. Okra NC_010516.1 3724090-3723869 Firmicutes Clostridium botulinum Ba4 str. 657 NC_012658.1 3743714-3743545 Firmicutes Clostridium botulinum Bf NZ_ABDP01000003.1 97823-98168 Firmicutes Clostridium botulinum C str. Eklund NZ_ABDQ01000001.1 491225-490975 Firmicutes Clostridium botulinum D str. 1873 NZ_ACSJ01000007.1 1361652-1361458 Firmicutes Clostridium botulinum E1 str. 'BoNT E Beluga' NZ_ACSC01000002.1 3536318-3536152 Firmicutes Clostridium botulinum E3 str. Alaska E43 NC_010723.1 331795-331959 Firmicutes Clostridium botulinum F str. Langeland NC_009699.1 3755650-3755460 Firmicutes Clostridium botulinum NCTC 2916 NZ_ABDO02000002.1 98084-98430 Firmicutes Clostridium butyricum 5521 gcontig_1106103650370 NZ_ABDT01000094.2 68856-68895 Firmicutes Clostridium butyricum E4 str. BoNT E BL5262 NZ_ACOM01000004.1 618161-617887 Firmicutes Clostridium carboxidivorans P7 NZ_ACVI01000150.1 4164-4369 Firmicutes Clostridium cellulolyticum H10 NC_011898.1 1474085-1474275 Firmicutes Clostridium cellulovorans 743B NZ_ACPD01000037.1 22911-22742 Firmicutes Clostridium difficile 630 NC_009089.1 163148-163336 Firmicutes Clostridium difficile ATCC 43255 NZ_ABKJ02000007.1 10479-10543 Firmicutes Clostridium difficile CD196 NC_013315 161293-161341 Firmicutes Clostridium difficile QCD-23m63 NZ_ABKL02000005.1 10376-10564 Firmicutes Clostridium difficile QCD-76w55 NZ_ABHE02000004.1 10609-10714 Firmicutes Clostridium difficile R20291 NC_013316 158711-158759 Firmicutes Clostridium hathewayi DSM 13479 NZ_ACIO01000800.1 1534-1727 Firmicutes Clostridium hiranonis DSM 13275 NZ_ABWP01000001.1 9895-10068 Firmicutes Clostridium kluyveri DSM 555 NC_009706 285115-285163 Firmicutes Clostridium kluyveri NBRC 12016 NC_011837.1 285033-285241 Firmicutes Clostridium methylpentosum DSM 5476 NZ_ACEC01000070.1 2416-2253 Firmicutes Clostridium novyi NT NC_008593.1 271960-272140 Firmicutes Clostridium papyrosolvens DSM 2782 NZ_ACXX01000034.1 2249-2059 Firmicutes Clostridium perfringens ATCC 13124 NC_008261 2901718-2901668 Firmicutes Clostridium perfringens C str. JGS1495 NZ_ABDU01000081.2 72732-72961 Firmicutes Clostridium perfringens D str. JGS1721 NZ_ABOO01000022.1 55682-55911 Firmicutes Clostridium perfringens E str. JGS1987 NZ_ABDW01000005.1 92450-92224 Firmicutes Clostridium perfringens NCTC 8239 NZ_ABDY01000004.1 72911-73140 Firmicutes Clostridium perfringens SM101 NC_008262 2544147-2544097 Firmicutes Clostridium perfringens str. 13 NC_003366.1 2679186-2678957 Firmicutes Clostridium phytofermentans ISDg NC_010001.1 4190893-4191067 Firmicutes Clostridium ramosum DSM 1402 NZ_ABFX02000008.1 116985-116827 Firmicutes Clostridium sp. 7_2_43FAA NZ_EQ999773.1 113920-114098 Firmicutes Clostridium sp. L2-50 NZ_AAYW02000008.1 168554-168333 Firmicutes Clostridium sp. SS2/1 NZ_ABGC03000028.1 56531-56725 Firmicutes Clostridium spiroforme DSM 1552 NZ_ABIK02000005.1 91400-91558 Firmicutes Clostridium sporogenes ATCC 15579 NZ_ABKW02000002.1 134310-134488 Firmicutes Clostridium tetani E88 NC_004557.1 2702477-2702192 Firmicutes Clostridium thermocellum DSM 4150 NZ_ABVG01000035.1 4146-4334 Firmicutes Coprococcus eutactus ATCC 27759 NZ_ABEY02000007.1 42363-42193 Firmicutes Desulfitobacterium hafniense DCB-2 NC_011830.1 930551-930735 Firmicutes Desulfotomaculum acetoxidans DSM 771 NC_013216.1 630803-630967 Firmicutes Desulfotomaculum hafniense DCB-2 NC_011830.1 930551-930735 Firmicutes Desulfotomaculum reducens MI-1 NC_009253.1 307638-307803 Firmicutes Dethiobacter alkaliphilus AHT 1 (in the 5' UTR of glmM ) NZ_ACJM01000001.1 235938-236101 Firmicutes Dethiobacter alkaliphilus AHT 1 NZ_ACJM01000001.1 237595-237758 Firmicutes casseliflavus EC10 NZ_GG692815.1 138065-138006 Firmicutes Enterococcus casseliflavus EC20 NZ_ACAO01000018.1 20948-20795 Firmicutes Enterococcus casseliflavus EC30 NZ_GG670385.1 138066-138007 Firmicutes Enterococcus faecalis ATCC 29200 NZ_ACHK01000091.1 30876-31033 Firmicutes Enterococcus faecalis T3 NZ_ACAF01000032.1 40877-40720 Firmicutes Enterococcus faecalis TUSoD Ef11 NZ_ACOX01000055.1 60028-60186 Firmicutes Enterococcus faecalis TX1322 NZ_ACGM01000011.1 24869-25026 Firmicutes Enterococcus faecalis V583 NC_004668 2055429-2055392 Firmicutes Enterococcus faecium 1,230,933 NZ_GG692537.1 6971-7033 Firmicutes Enterococcus faecium 1,231,408 NZ_GG688555.1 14139-14077 Firmicutes Enterococcus faecium 1,231,410 NZ_GG692468.1 14145-14083 Firmicutes Enterococcus faecium C68 NZ_GG703718.1 85577-85639 Firmicutes Enterococcus faecium D344SRF NZ_ACZZ01000014.1 9450-9388 Firmicutes Enterococcus faecium DO NZ_AAAK03000020.1 30101-29943 Firmicutes Enterococcus faecium TC 6 NZ_GG703587.1 9453-9391 Firmicutes Enterococcus faecium TX1330 NZ_ACHL01000106.1 2301-2459 Firmicutes Enterococcus gallinarum EG2 NZ_ACAJ01000010.1 50264-50108 Firmicutes Erysipelothrix rhusiopathiae ATCC 19414 NZ_ACLK01000008.1 187710-187597 Firmicutes Ethanoligenens harbinense YUAN-3 ctg00082 NZ_ADJQ01000017.1 57327-57280 Firmicutes Eubacterium biforme DSM 3989 NZ_ABYT01000100.1 23083-23240 Firmicutes Eubacterium rectale ATCC 33656 NC_012781.1 746224-746395 Firmicutes Exiguobacterium sibiricum 255-15 NC_010556.1 159272-159442 Firmicutes Exiguobacterium sp. AT1b NC_012673.1 1542763-1542602 Firmicutes Exiguobacterium sp. AT1b NC_012673.1 2131388-2131549 Firmicutes prausnitzii A2-165 NZ_ACOP02000038.1 3162-3340 Firmicutes Faecalibacterium prausnitzii M21/2 NZ_ABED02000029.1 503669-503495 Firmicutes magna ATCC 29328 NC_010376.1 1324220-1324373 Firmicutes Gemella haemolysans ATCC 10379 NZ_ACDZ02000008.1 209946-210113 Firmicutes Geobacillus kaustophilus HTA426 NC_006510.1 166976-167157 Firmicutes Geobacillus kaustophilus HTA426 NC_006510.1 1905580-1905380 Firmicutes Geobacillus sp. G11MC16 NZ_ABVH01000013.1 61807-61625 Firmicutes Geobacillus sp. WCH70 NC_012793.1 177499-177678 Firmicutes Geobacillus sp. Y4.1MC1 NZ_ACVM01000024.1 7411-7590 Firmicutes Geobacillus sp. Y412MC10 NC_013406.1 6389041-6388830 Firmicutes Geobacillus sp. Y412MC61 NC_013411.1 166443-166624 Firmicutes Geobacillus thermodenitrificans NG80-2 NC_009328 163745-163793 Firmicutes Granulicatella adiacens ATCC 49175 NZ_ACKZ01000029.1 37337-37177 Firmicutes Granulicatella elegans ATCC 700633 NZ_GG703806.1 239221-239380 Firmicutes Halothermothrix orenii H 168 NC_011899.1 161626-161806 Firmicutes Heliobacterium modesticaldum Ice1 NC_010337.2 1533390-1533631 Firmicutes plantarum JDM1 NC_012984 730370-730416 Firmicutes Lactobacillus plantarum strain WCFS1 NC_004567 94482-94528 Firmicutes Lactobacillus plantarum subsp. Plantarum ATCC 14917 NZ_ACGZ01000068.1 9863-10024 Firmicutes Listeria grayi DSM 20601 NZ_ACCR01000017.1 86334-86508 Firmicutes Listeria innocua Clip11262 NC_003212.1 755732-755937 Firmicutes Listeria monocytogenes Clip80459 serotype 4b NC_012488 765008-765050 Firmicutes Listeria monocytogenes F6900 NZ_AARU02000001.1 256156-256360 Firmicutes Listeria monocytogenes FSL F2-515 NZ_AARI02001359.1 366-570 Firmicutes Listeria monocytogenes FSL J1-208 NZ_AARL02000165.1 1807-2011 Firmicutes Listeria monocytogenes FSL N1-017 NZ_AARP03000038.1 15027-14823 Firmicutes Listeria monocytogenes FSL R2-561 NZ_AARS01000003.1 97903-97699 Firmicutes Listeria monocytogenes HCC23 NC_011660.1 1888341-1888137 Firmicutes Listeria monocytogenes str. 4b F2365 NC_002973.6 770942-771147 Firmicutes Listeria monocytogenes str. 4b H7858 NZ_AADR01000002.1 45417-45212 Firmicutes Listeria seeligeri str. SLCC3954 serovar 1/2b NC_013891 674437-674484 Firmicutes Listeria welshimeri serovar 6b str. SLCC5334 NC_008555.1 720653-720858 Firmicutes Lysinibacillus sphaericus C3-41 NC_010382.1 4418251-4418069 Firmicutes caseolyticus JCSC5402 NC_011999.1 338168-338330 Firmicutes Mitsuokella multacida DSM 20544 NZ_ABWK02000005.1 5509-5338 Firmicutes Moorella thermoacetica ATCC 39073 NC_007644.1 2349366-2349163 Firmicutes Natranaerobius thermophilus JW/NM-WN-LF NC_010718.1 253762-253952 Firmicutes Oceanobacillus iheyensis HTE831 NC_004193.1 258874-259052 Firmicutes Oribacterium sinus F0268 NZ_ACKX01000170.1 24411-24575 Firmicutes Oribacterium sp. Oral taxon 078 str. F0262 NZ_ACIQ01000066.1 23784-23626 Firmicutes Paenibacillus larvae subsp. Larvae BRL-230010 NZ_AARF01000134.1 55758-55491 Firmicutes Paenibacillus sp. JDR-2 NC_012914.1 6458108-6457893 Firmicutes Paenibacillus sp. Oral taxon 786 str. D14 NZ_GG695991.1 62599-62298 Firmicutes Pelotomaculum thermopropionicum SI NC_009454.1 532217-532452 Firmicutes lacrimalis 315-B contig00019 NZ_ADDO1000035.1 20524-20620 Firmicutes anaerobius 653-L NZ_ADJN01000015.1 46769-46826 Firmicutes Roseburia intestinalis L1-82 NZ_ABYJ02000025.1 32427-32200 Firmicutes Roseburia inulinivorans DSM 16841 NZ_ACFY01000143.1 9506-9335 Firmicutes Selenomonas flueggei ATCC 43531 NZ_ACLA01000010.1 159823-159657 Firmicutes Selenomonas noxia ATCC 43541 NZ_ACKT01000040.1 62237-62408 Firmicutes Selenomonas sputigena ATCC 35185 NZ_ACKP02000042.1 27515-27362 Firmicutes Shuttleworthia satelles DSM 14600 NZ_ACIP02000001.1 619898-620097 Firmicutes aureus subsp. Aureus MRSA252 NC_002952.2 2311875-2311649 Firmicutes subsp. Aureus MW2 NC_003923.1 2232245-2232019 Firmicutes Staphylococcus aureus subsp. Aureus N315 NC_002745.2 2212308-2212082 Firmicutes Staphylococcus capitis SK14 NZ_ACFR01000009.1 78427-78203 Firmicutes Staphylococcus carnosus subsp. Carnosus TM300 NC_012121.1 1674495-1674275 Firmicutes Staphylococcus epidermidis BCM-HMP0060 NZ_ACHE01000107.1 4027-4168 Firmicutes Staphylococcus epidermidis M23864:W1 NZ_ACJB01000004.1 10941-10716 Firmicutes Staphylococcus epidermidis RP62A NC_002976.1 1799230-1799003 Firmicutes Staphylococcus epidermidis W23144 NZ_ACJC01000002.1 28243-28016 Firmicutes Staphylococcus haemolyticus JCSC1435 NC_007168.1 888946-889166 Firmicutes Staphylococcus hominis SK119 NZ_ACLP01000009.1 3975-4177 Firmicutes Staphylococcus lugdunensis HKU09-01 NC_013893 925508-925614 Firmicutes Staphylococcus saprophyticus subsp. Saprophyticus ATCC 15305 NC_007350.1 759372-759597 Firmicutes Staphylococcus warneri L37603 NZ_ACPZ01000047.1 76502-76274 Firmicutes Symbiobacterium thermophilum IAM 14863 NC_006177.1 222192-222362 Firmicutes Syntrophomonas wolfei subsp. Wolfei str. Goettingen NC_008346.1 2417840-2417600 Firmicutes Thermoanaerobacter brockii subsp. Finnii Ako-1 NZ_ACQZ01000021.1 25111-24945 Firmicutes Thermoanaerobacter ethanolicus CCSD1 ctg00008 NZ_ACXY01000010.1 15428-15470 Firmicutes Thermoanaerobacter italicus Ab9 NZ_ACVH01000048.1 17473-17640 Firmicutes Thermoanaerobacter mathranii subsp. Mathranii str. A3 NZ_ACVK01000008.1 61623-61456 Firmicutes Thermoanaerobacter pseudethanolicus ATCC 33223 NC_010321 498372-498414 Firmicutes Thermoanaerobacter sp. X514 NC_010320 971783-971825 Firmicutes Thermoanaerobacter tengcongensis MB4 NC_003869.1 2101607-2101438 Firmicutes Thermoanaerobacterium thermosaccharolyticum DSM 571 NZ_ACVG01000009.1 57460-57295 Firmicutes Thermosinus carboxydivorans Nor1 NZ_AAWL01000008.1 56202-56370 Firmicutes Veillonella dispar ATCC 17748 NZ_ACIK02000019.1 241845-242016 Firmicutes DSM 2008 NZ_ABVB01000004.1 20152-19981 Firmicutes Finegoldia magna ATCC 53516 NZ_ACHM02000002.1 117513-117389 mortiferum ATCC 9817 NZ_GG657908.1 666661-666858 Fusobacteria subsp. Nucleatum ATCC 25586 NC_003454.1 1095654-1095808 Fusobacteria Fusobacterium nucleatum subsp. Polymorphum ATCC 10953 Ctg90 NZ_AARG01000012.1 236795-236691 Fusobacteria Fusobacterium nucleatum subsp. Vincentii ATCC 49256 NZ_AABF02000219.1 891-1047 Fusobacteria Fusobacterium periodonticum ATCC 33693 NZ_ACJY01000033.1 7024-6869 Fusobacteria Fusobacterium sp. 3_1_33 NZ_GG704473.1 157-313 Fusobacteria Fusobacterium sp. 3_1_36A2 NZ_GG698790.1 6012-6168 Fusobacteria Fusobacterium sp. 4_1_13 cont1.1 NZ_ACDE01000001.1 61819-61879 Fusobacteria Fusobacterium sp. 7_1 NZ_GG658011.1 1161803-1161647 Fusobacteria Fusobacterium sp. 7_1 cont1.34 NZ_ACDF01000034.1 49887-49827 Fusobacteria Fusobacterium sp. D11 NZ_ACDS01000055.1 597-753 Fusobacteria Fusobacterium ulcerans ATCC 49185 NZ_ACDH01000031.1 35997-36151 Fusobacteria Fusobacterium varium ATCC 27725 NZ_GG696096.1 561278-561432 Fusobacteria Leptotrichia buccalis DSM 1135 NC_013192.1 2214491-2214573 Fusobacteria Leptotrichia goodfellowii F0264 NZ_ADAD01000161.1 21368-21531 Fusobacteria Leptotrichia hofstadii F0254 NZ_ACVB02000026.1 132214-132297 Fusobacteria Sebaldella termitidis ATCC 33386 NC_013517.1 1646517-1646371 Fusobacteria Sebaldella termitidis ATCC 33386 (in the 5' UTR of glnA ) NC_013517.1 2488055-2488214 Fusobacteria Anaerobaculum hydrogeniformans ATCC BAA-1850 NZ_ACJX01000041.1 825-654 Dethiosulfovibrio peptidovorans DSM 11002 NZ_ABTR01000012.1 41593-41760 Synergistetes Jonquetella anthropi E3_33 E1 NZ_ACOO02000031.1 331330-331165 Synergistetes Thermoanaerovibrio acidaminovorans DSM 6589 NZ_ABUW01000004.1 70915-71078 Synergistetes bacterium D7 NZ_EQ999885.1 51753-51595 Thermobaculum terrenum ATCC BAA-798 NC_013525.1 560200-560360 Thermobaculum