Zooxanthellae That Open Calcium Channels: Implications for Reef Corals
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Development of a Quantitative PCR Assay for the Detection And
bioRxiv preprint doi: https://doi.org/10.1101/544247; this version posted February 8, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Development of a quantitative PCR assay for the detection and enumeration of a potentially ciguatoxin-producing dinoflagellate, Gambierdiscus lapillus (Gonyaulacales, Dinophyceae). Key words:Ciguatera fish poisoning, Gambierdiscus lapillus, Quantitative PCR assay, Great Barrier Reef Kretzschmar, A.L.1,2, Verma, A.1, Kohli, G.S.1,3, Murray, S.A.1 1Climate Change Cluster (C3), University of Technology Sydney, Ultimo, 2007 NSW, Australia 2ithree institute (i3), University of Technology Sydney, Ultimo, 2007 NSW, Australia, [email protected] 3Alfred Wegener-Institut Helmholtz-Zentrum fr Polar- und Meeresforschung, Am Handelshafen 12, 27570, Bremerhaven, Germany Abstract Ciguatera fish poisoning is an illness contracted through the ingestion of seafood containing ciguatoxins. It is prevalent in tropical regions worldwide, including in Australia. Ciguatoxins are produced by some species of Gambierdiscus. Therefore, screening of Gambierdiscus species identification through quantitative PCR (qPCR), along with the determination of species toxicity, can be useful in monitoring potential ciguatera risk in these regions. In Australia, the identity, distribution and abundance of ciguatoxin producing Gambierdiscus spp. is largely unknown. In this study we developed a rapid qPCR assay to quantify the presence and abundance of Gambierdiscus lapillus, a likely ciguatoxic species. We assessed the specificity and efficiency of the qPCR assay. The assay was tested on 25 environmental samples from the Heron Island reef in the southern Great Barrier Reef, a ciguatera endemic region, in triplicate to determine the presence and patchiness of these species across samples from Chnoospora sp., Padina sp. -
Waterborne Pathogens in Agricultural Watersheds
United States Department of Waterborne Pathogens in Agriculture Natural Resources Agricultural Watersheds Conservation Service Watershed Science by Barry H. Rosen Institute NRCS, Watershed Science Institute School of Natural Resources University of Vermont, Burlington Contents Introduction ..................................................... 1 Pathogens of concern ..................................... 3 Pathogens in the environment .....................22 Control methods............................................ 33 Monitoring and evaluation ........................... 43 Anticipated developments ........................... 47 Summary ........................................................ 48 Glossary .......................................................... 49 References...................................................... 52 With contributions by Richard Croft, Natural Resources Conservation Service (retired) Edward R. Atwill, D.V.M., Ph.D., School of Veterinary Medicine, University of California-Davis, 18830 Road 112, Tulare, California Susan Stehman, V.M.D., Senior Extension Veterinarian, New York State Diagnostic Laboratory, College of Veterinary Medicine, Cornell University, Ithaca, New York Susan Wade, Ph.D., Director Parasitology Laboratory, New York State Diagnostic Laboratory, College of Veterinary Medicine, Cornell University, Ithaca, New York Issued June 2000 The United States Department of Agriculture (USDA) prohibits discrimi- nation in all its programs and activities on the basis of race, color, na- tional origin, gender, -
Symbiodinium Genomes Reveal Adaptive Evolution of Functions Related to Coral-Dinoflagellate Symbiosis
Corrected: Publisher correction ARTICLE DOI: 10.1038/s42003-018-0098-3 OPEN Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis Huanle Liu1, Timothy G. Stephens1, Raúl A. González-Pech1, Victor H. Beltran2, Bruno Lapeyre3,4,12, Pim Bongaerts5,6, Ira Cooke4, Manuel Aranda7, David G. Bourne2,8, Sylvain Forêt3,9, David J. Miller3,4, Madeleine J.H. van Oppen2,10, Christian R. Voolstra7, Mark A. Ragan1 & Cheong Xin Chan1,11 1234567890():,; Symbiosis between dinoflagellates of the genus Symbiodinium and reef-building corals forms the trophic foundation of the world’s coral reef ecosystems. Here we present the first draft genome of Symbiodinium goreaui (Clade C, type C1: 1.03 Gbp), one of the most ubiquitous endosymbionts associated with corals, and an improved draft genome of Symbiodinium kawagutii (Clade F, strain CS-156: 1.05 Gbp) to further elucidate genomic signatures of this symbiosis. Comparative analysis of four available Symbiodinium genomes against other dinoflagellate genomes led to the identification of 2460 nuclear gene families (containing 5% of Symbiodinium genes) that show evidence of positive selection, including genes involved in photosynthesis, transmembrane ion transport, synthesis and modification of amino acids and glycoproteins, and stress response. Further, we identify extensive sets of genes for meiosis and response to light stress. These draft genomes provide a foundational resource for advancing our understanding of Symbiodinium biology and the coral-algal symbiosis. 1 Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia. 2 Australian Institute of Marine Science, Townsville, QLD 4810, Australia. 3 ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD 4811, Australia. -
Further Advance of Gambierdiscus Species in the Canary Islands, with the First Report of Gambierdiscus Belizeanus
toxins Article Further Advance of Gambierdiscus Species in the Canary Islands, with the First Report of Gambierdiscus belizeanus Àngels Tudó 1, Greta Gaiani 1, Maria Rey Varela 1 , Takeshi Tsumuraya 2 , Karl B. Andree 1, Margarita Fernández-Tejedor 1 ,Mònica Campàs 1 and Jorge Diogène 1,* 1 Institut de Recerca i Tecnologies Agroalimentàries (IRTA), Ctra. Poble Nou Km 5.5, Sant Carles de la Ràpita, 43540 Tarragona, Spain; [email protected] (À.T.); [email protected] (G.G.); [email protected] (M.R.V.); [email protected] (K.B.A.); [email protected] (M.F.-T.); [email protected] (M.C.) 2 Department of Biological Science, Graduate School of Science, Osaka Prefecture University, Osaka 599-8570, Japan; [email protected] * Correspondence: [email protected] Received: 22 September 2020; Accepted: 27 October 2020; Published: 31 October 2020 Abstract: Ciguatera Poisoning (CP) is a human food-borne poisoning that has been known since ancient times to be found mainly in tropical and subtropical areas, which occurs when fish or very rarely invertebrates contaminated with ciguatoxins (CTXs) are consumed. The genus of marine benthic dinoflagellates Gambierdiscus produces CTX precursors. The presence of Gambierdiscus species in a region is one indicator of CP risk. The Canary Islands (North Eastern Atlantic Ocean) is an area where CP cases have been reported since 2004. In the present study, samplings for Gambierdiscus cells were conducted in this area during 2016 and 2017. Gambierdiscus cells were isolated and identified as G. australes, G. excentricus, G. caribaeus, and G. -
Mixotrophy Among Dinoflagellates1
J Eukaryn Microbiol.. 46(4). 1999 pp. 397-401 0 1999 by the Society of Protozoologists Mixotrophy among Dinoflagellates’ DIANE K. STOECKER University of Maryland Center for Environmentul Science, Horn Point Laboratory, P.O. Box 775, Cambridge, Marylund 21613, USA ABSTRACT. Mixotrophy, used herein for the combination of phototrophy and phagotrophy, is widespread among dinoflagellates. It occurs among most, perhaps all, of the extant orders, including the Prorocentrales, Dinophysiales, Gymnodiniales, Noctilucales, Gon- yaulacales, Peridiniales, Blastodiniales, Phytodiniales, and Dinamoebales. Many cases of mixotrophy among dinoflagellates are probably undocumented. Primarily photosynthetic dinoflagellates with their “own” plastids can often supplement their nutrition by preying on other cells. Some primarily phagotrophic species are photosynthetic due to the presence of kleptochloroplasts or algal endosymbionts. Some parasitic dinoflagellates have plastids and are probably mixotrophic. For most mixotrophic dinoflagellates, the relative importance of photosynthesis, uptake of dissolved inorganic nutrients, and feeding are unknown. However, it is apparent that mixotrophy has different functions in different physiological types of dinoflagellates. Data on the simultaneous regulation of photosynthesis, assimilation of dissolved inorganic and organic nutrients, and phagotophy by environmental parameters (irradiance, availablity of dissolved nutrients, availability of prey) and by life history events are needed in order to understand the diverse -
Morphological Studies of the Dinoflagellate Karenia Papilionacea in Culture
MORPHOLOGICAL STUDIES OF THE DINOFLAGELLATE KARENIA PAPILIONACEA IN CULTURE Michelle R. Stuart A Thesis Submitted to the University of North Carolina Wilmington in Partial Fulfillment of the Requirements for the Degree of Master of Science Department of Biology and Marine Biology University of North Carolina Wilmington 2011 Approved by Advisory Committee Alison R. Taylor Richard M. Dillaman Carmelo R. Tomas Chair Accepted by __________________________ Dean, Graduate School This thesis has been prepared in the style and format consistent with the journal Journal of Phycology ii TABLE OF CONTENTS ABSTRACT ................................................................................................................................... iv ACKNOWLEDGMENTS .............................................................................................................. v DEDICATION ............................................................................................................................... vi LIST OF TABLES ........................................................................................................................ vii LIST OF FIGURES ..................................................................................................................... viii INTRODUCTION .......................................................................................................................... 1 MATERIALS AND METHODS .................................................................................................... 5 RESULTS -
Transcriptomic Analysis of Polyketide Synthases in a Highly Ciguatoxic Dinoflagellate, Gambierdiscus Polynesiensis and Low Toxic
PLOS ONE RESEARCH ARTICLE Transcriptomic analysis of polyketide synthases in a highly ciguatoxic dinoflagellate, Gambierdiscus polynesiensis and low toxicity Gambierdiscus pacificus, from French Polynesia 1¤a 1¤b 2¤c 3 Frances M. Van DolahID *, Jeanine S. Morey , Shard Milne , Andre Ung , Paul a1111111111 E. Anderson2¤d, Mireille Chinain3 a1111111111 a1111111111 1 Marine Genomics Core, Hollings Marine Laboratory, Charleston, SC, United States of America, 2 Charleston Computational Genomics Group, Department of Computer Science, College of Charleston, a1111111111 Charleston, SC, United States of America, 3 Laboratoire des Biotoxines Marines, Institut Louis MalardeÂÐ a1111111111 UMR 241 EIO, Papeete, Tahiti, French Polynesia ¤a Current address: Graduate Program in Marine Biology, University of Charleston, Charleston, SC, United States of America ¤b Current address: National Marine Mammal Foundation, Johns Island, SC, United States of America ¤c Current address: School of Environmental and Forest Sciences, University of Washington, Seattle, WA, OPEN ACCESS United States of America Citation: Van Dolah FM, Morey JS, Milne S, Ung A, ¤d Current address: Department of Computer Science and Software Engineering, California Polytechnic Anderson PE, Chinain M (2020) Transcriptomic State University, San Luis Obispo, CA, United States of America [email protected] analysis of polyketide synthases in a highly * ciguatoxic dinoflagellate, Gambierdiscus polynesiensis and low toxicity Gambierdiscus pacificus, from French Polynesia. PLoS ONE 15(4): Abstract e0231400. https://doi.org/10.1371/journal. pone.0231400 Marine dinoflagellates produce a diversity of polyketide toxins that are accumulated in Editor: Ross Frederick Waller, University of marine food webs and are responsible for a variety of seafood poisonings. Reef-associated Cambridge, UNITED KINGDOM dinoflagellates of the genus Gambierdiscus produce toxins responsible for ciguatera poison- Received: January 29, 2020 ing (CP), which causes over 50,000 cases of illness annually worldwide. -
Foodborne Illness Surveillance and Investigation
Food and Waterborne Illness Surveillance and Investigation Annual Report, Florida, 2000 Bureau of Environmental Epidemiology Division of Environmental Health Department of Health Rev. 11/18/02 1 Table of Contents Section Page List of Tables 3 List of Figures 5 Overview 6 Training and Continuing Education 10 Waterborne Illness Investigation Training 2000 10 Bioterrorism Training 2000 10 Interactive and Online Training 11 Training Modules Currently Under Development 11 Outbreak Definitions 11 Foodborne Illness Outbreak 11 Confirmed Outbreak 11 Suspected Outbreak 11 Selected Food and Waterborne Outbreaks 12 Ciguatera Intoxication – Broward County, March, 2000 12 Two Clusters of Gastrointestinal Illness Associated With the 13 Consumption of “Hot and Spicy” Clams – April, 2000 Tin Poisoning Associated with Pineapple Chunks At an 15 Elementary School - Pasco County, April 2000 Ciguatera Intoxication - Palm Beach County, August, 2000 18 Cryptosporidium Outbreak Associated With a Swimming Pool – 19 Nassau County, August 2000 Norwalk at a Catered Wedding Reception - Escambia County, 21 August 2000 Vibrio vulnificus, Florida, 2000 23 Appendix 24 Statewide Data Tables 25 Explanation of Contributing Factors For Foodborne Illness 58 Outbreaks From CDC Form 52.13 Factors Contributing to Water Contamination 59 2 List of Tables Page Table 1: Eight Most Prevalent Contributing Factors in Foodborne Outbreaks, Florida 6 2000 Table 2: Summary of Foodborne Illness Outbreaks Reported to Florida 1989 – 2000 7 Table 3: Confirmed, Suspected and Total Outbreaks Reported to Florida, 1994 - 2000 8 Table 4: Frequency of Symptoms, Elementary School Lunch, April 11, 2000, Pasco 16 County, Florida Table 5: Food-Specific Attack Rate Table, Elementary School Lunch, April 11, 2000, 16 Pasco County, Florida Table 6: Odds Ratios for Cumulative Time Spent in the Pool, Cryptosporidium Oubreak, 20 August, 2000, Nassau County, Florida Table 7: Frequency of Symptoms Summary, Norwalk Outbreak, Escambia County, 21 August, 2000 Table 8: Food Specific Attack Rate Table. -
Molecular Identification of Gambierdiscus and Fukuyoa
marine drugs Short Note Molecular Identification of Gambierdiscus and Fukuyoa (Dinophyceae) from Environmental Samples Kirsty F. Smith 1,*, Laura Biessy 1, Phoebe A. Argyle 1,2, Tom Trnski 3, Tuikolongahau Halafihi 4 and Lesley L. Rhodes 1 1 Coastal & Freshwater Group, Cawthron Institute, Private Bag 2, 98 Halifax Street East, Nelson 7042, New Zealand; [email protected] (L.B.); [email protected] (P.A.A.); [email protected] (L.L.R.) 2 School of Biological Sciences, University of Canterbury, Private Bag 4800, 20 Kirkwood Avenue, Christchurch 8041, New Zealand 3 Auckland War Memorial Museum, Private Bag 92018, Victoria Street West, Auckland 1142, New Zealand; [email protected] 4 Ministry of Fisheries, P.O. Box 871, Nuku’alofa, Tongatapu, Tonga; [email protected] * Correspondence: [email protected]; Tel.: +64-3-548-2319 Received: 30 March 2017; Accepted: 28 July 2017; Published: 2 August 2017 Abstract: Ciguatera Fish Poisoning (CFP) is increasing across the Pacific and the distribution of the causative dinoflagellates appears to be expanding. Subtle differences in thecal plate morphology are used to distinguish dinoflagellate species, which are difficult to determine using light microscopy. For these reasons we sought to develop a Quantitative PCR assay that would detect all species from both Gambierdiscus and Fukuyoa genera in order to rapidly screen environmental samples for potentially toxic species. Additionally, a specific assay for F. paulensis was developed as this species is of concern in New Zealand coastal waters. Using the assays we analyzed 31 samples from three locations around New Zealand and the Kingdom of Tonga. -
Review of Harmful Algal Blooms in the Coastal Mediterranean Sea, with a Focus on Greek Waters
diversity Review Review of Harmful Algal Blooms in the Coastal Mediterranean Sea, with a Focus on Greek Waters Christina Tsikoti 1 and Savvas Genitsaris 2,* 1 School of Humanities, Social Sciences and Economics, International Hellenic University, 57001 Thermi, Greece; [email protected] 2 Section of Ecology and Taxonomy, School of Biology, Zografou Campus, National and Kapodistrian University of Athens, 16784 Athens, Greece * Correspondence: [email protected]; Tel.: +30-210-7274249 Abstract: Anthropogenic marine eutrophication has been recognized as one of the major threats to aquatic ecosystem health. In recent years, eutrophication phenomena, prompted by global warming and population increase, have stimulated the proliferation of potentially harmful algal taxa resulting in the prevalence of frequent and intense harmful algal blooms (HABs) in coastal areas. Numerous coastal areas of the Mediterranean Sea (MS) are under environmental pressures arising from human activities that are driving ecosystem degradation and resulting in the increase of the supply of nutrient inputs. In this review, we aim to present the recent situation regarding the appearance of HABs in Mediterranean coastal areas linked to anthropogenic eutrophication, to highlight the features and particularities of the MS, and to summarize the harmful phytoplankton outbreaks along the length of coastal areas of many localities. Furthermore, we focus on HABs documented in Greek coastal areas according to the causative algal species, the period of occurrence, and the induced damage in human and ecosystem health. The occurrence of eutrophication-induced HAB incidents during the past two decades is emphasized. Citation: Tsikoti, C.; Genitsaris, S. Review of Harmful Algal Blooms in Keywords: HABs; Mediterranean Sea; eutrophication; coastal; phytoplankton; toxin; ecosystem the Coastal Mediterranean Sea, with a health; disruptive blooms Focus on Greek Waters. -
A Review on Toxic and Harmful Algae in Greek Coastal Waters (E
Toxins 2010, 2, 1019-1037; doi:10.3390/toxins2051019 OPEN ACCESS toxins ISSN 2072-6651 www.mdpi.com/journal/toxins Review A Review on Toxic and Harmful Algae in Greek Coastal Waters (E. Mediterranean Sea) Lydia Ignatiades 1,* and Olympia Gotsis-Skretas 2 1 National Center of Scientific Research ―Demokritos‖, Institute of Biology, Aghia Paraskevi, 15310 Athens, Greece 2 Hellenic Center for Marine Research, Institute of Oceanography, 19013 Anavyssos, Greece; E-Mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +30 210 6503629; Fax: +30 210 6511767. Received: 22 March 2010; in revised form: 23 April 2010 / Accepted: 5 May 2010 / Published: 11 May 2010 Abstract: The Greek coastal waters are subjected to harmful algal bloom (HAB) phenomena due to the occurrence of species characterized as toxic (TX), potentially toxic (PT), and non-toxic, high biomass (HB) producers causing harm at multiple levels. The total number of (TX), (PT) and (HB) algae reported in this work are 61, but only 16 species have been associated with the occurrence of important HABs causing damage in the marine biota and the water quality. These phenomena are sporadic in time, space and recurrence of the causative species, and are related to the anthropogenically-induced eutrophication conditions prevailing in the investigated areas. Keywords: harmful algae; Aegean Sea; Ionian Sea 1. Introduction The coastline (18,000 km) of the Greek mainland is located in the Eastern Mediterranean Sea, it is surrounded by the Aegean, Ionian and Cretan Seas and its morphological regime shows a variety of gulfs and semi-enclosed gulfs. -
Ciguatera in Florida Keys Patch Reefs: Biogeographic
CIGUATERA IN FLORIDA KEYS PATCH REEFS: BIOGEOGRAPHIC INDICATORS OF GAMBIERDISCUS DENSITY AND TEMPORAL ABUNDANCE (CFP:BIG DATA) A Thesis Presented to The Faculty of the College of Arts and Sciences Florida Gulf Coast University In Partial Fulfillment of the Requirement for the Degree of Master of Science By Meghan Elizabeth Hian 2018 APPROVAL SHEET This thesis is submitted in partial fulfillment of the requirements for the degree of Master of Science Meghan Elizabeth Hian Approved: Dr. Michael Parsons Committee Chair / Advisor Dr. Michael Savarese Dr. S. Gregory Tolley The final copy of this thesis has been examined by the signatories, and we find that both the content and the form meet acceptable presentation standards of scholarly work in the above mentioned discipline. ABSTRACT Ciguatera fish poisoning (CFP) is a global public health concern that is associated with Gambierdiscus, a genus of harmful algae found in coral reef environments that includes species known to produce toxins (ciguatoxins). Outbreaks of CFP have often been linked to elevated abundance of Gambierdiscus cells and disturbance-related degradation of coral reefs. However, the influence of human activities on CFP risk, both directly and indirectly within the broader context of reef health, has yet to be defined for highly exploited patch reefs in the Florida Keys. The objectives of this study were to define spatial and temporal patterns in reef health and Gambierdiscus abundance across the three regions (Upper, Middle, Lower), to determine whether the drivers of those patterns were natural or anthropogenic, and to identify biogeographic indicators of risk. To address these objectives, this study combined field sampling with a “big data” approach to spatial analysis.