RAS Program Book[2]
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Master List of References ACADVL 1
Last Revision: 6/2017 DEPARTMENT OF PATHOLOGY AND LABORATORY MEDICINE PRECISION DIAGNOSTICS – INHERITED DISEASE Master List of References ACADVL 1. Mathur A, Sims HF, Gopalakrishnan D et al. Molecular heterogeneity in very-long-chain acyl-CoA dehydrogenase deficiency causing pediatric cardiomyopathy and sudden death. Circulation 1999;99:1337-43. [PMID: 10077518] 2. Vianey-Saban C, Divry P, Brivet M et al. Mitochondrial very-long-chain acyl-coenzyme A dehydrogenase deficiency: Clinical characteristics and diagnostic considerations in 30 patients. Clin Chim Acta 1998;269:43-62. [PMID: 9498103] AR 1. Giagulli VA, Carbone MD, De Pergola G, et al. Could androgen receptor gene CAG tract polymorphism affect spermatogenesis in men with idiopathic infertility? J Assist Reprod Genet 2014;31(6):689-97. [PMID: 24691874] 2. Gottlieb B, Beitel LK, Nadarajah A, et al. The androgen receptor gene mutations database (ARDB): 2012 update. Hum Mutat. 2012;33:887-94. [PMID: 22334387] Array CGH 1. Boone PM, Bacino CA, Shaw CA et al., Detection of clinically relevant exonic copy-number changes by array CGH. Hum Mutat 2010;31(12):1326-1342. [PMID: 20848651] CFTR 1. Collaco AM, Geibel P, Lee BS et al. Functional vacuolar ATPase (V-ATPase) proton pumps traffic to the enterocyte brush border membrane and require CFTR. Am J Physiol Cell Physiol 2013;305(9):C981-996. [PMID: 23986201] 2. Lu S, Yang X, Li X et al. Different cystic fibrosis transmembrane coductance regulator mutations in Chinese men with congenital bilateral absence of vas deferens and other acquired obtructive azoospermia. Urology 2013;82(4):824-828. [PMID: 23953609] 3. Sosnay PR, Siklosi KR, Van Goor F et al. -
International Symposium on New Developments in Neurofibromatoses and Rasopathies
INTERNATIONAL SYMPOSIUM ON NEW DEVELOPMENTS IN NEUROFIBROMATOSES AND RASOPATHIES Their Management, Diagnosis, Current and Future Therapeutic Targets 27th - 29th November 2017, Crowne Plaza, Kochi, Kerala, South India INTERNATIONAL SYMPOSIUM ON NEW DEVELOPMENTS IN NEUROFIBROMATOSES AND RASOPATHIES THE FIRST INTERNATIONAL SYMPOSIUM ON RASOPATHIES TO BE HELD IN ASIA RASopathies are a class of developmental disorders with overlapping clinical features as well as genetic mutations. RASopathies are associated with dysregulation of the RAS-MAPK (RAS/mitogen activated protein kinase) signalling pathway, an important pathway in humans as it is related to nine different genetic conditions and in many cancers. The meeting will bring together leading scientists, clinicians, researchers and trainee health care professionals in the field of genetics, cancer, neurology, paediatrics, cardiology, neurosurgery, craniofacial surgery, plastic surgery, dermatology, oncology and biomedical sciences from across the world. 200 25+ 20+ PLACES SPEAKERS TOPICS AIMS TO ENSURE THAT HEALTH PROFESSIONALS AND TO IDENTIFY THERAPEUTIC TARGETS FOR SCIENTISTS ARE KEPT ABREAST OF ANY NEW SEVERAL OF THESE RARE DISEASES DEVELOPMENTS IN CLINICAL PRACTICE TOPICS COVERED o RASopathies: Syndromes of Ras/ MAPK pathway o Cardio-Facio-Cutaneous Syndrome dysregulation o Capillary Malformation-Arteriovenous o Neurofibromatosis Type 1 Malformation Syndrome o Legius Syndrome o Natural history, improved diagnosis and genotype phenotype correlation for NF2 and o Noonan Syndrome Schwannomatosis -
Blueprint Genetics Noonan Syndrome Panel
Noonan Syndrome Panel Test code: CA0501 Is a 35 gene panel that includes assessment of non-coding variants. Is ideal for patients with a clinical suspicion of a RASopathy including Noonan syndrome with or without lentigines, cardio- facio-cutaneous (CFC) syndrome, Costello syndrome, Noonan-like syndromes or other syndromes causing differential diagnostic challenges such as Legius syndrome, Baraitser-Winter syndromes and neurofibromatosis. About Noonan Syndrome Noonan syndrome is one of the most common syndromes with an estimated prevalence of 1 in 1,000 to 1 in 2,500 live births. It is clinically and genetically heterogeneous condition characterized by cardiovascular abnormalities, distinctive facial features, chest deformity, short stature, and other co-morbidities. Among the Noonan syndrome associated genes, many different genotype-phenotype correlations have been established although no phenotypic features are exclusively associated with one genotype. There are, however, significant differences in the risk of various Noonan syndrome manifestations based on the causative gene. Availability 4 weeks Gene Set Description Genes in the Noonan Syndrome Panel and their clinical significance Gene Associated phenotypes Inheritance ClinVar HGMD ACTB* Baraitser-Winter syndrome AD 55 60 ACTG1* Deafness, Baraitser-Winter syndrome AD 27 47 BRAF* LEOPARD syndrome, Noonan syndrome, Cardiofaciocutaneous syndrome AD 134 65 CBL Noonan syndrome-like disorder with or without juvenile myelomonocytic AD 24 43 leukemia CCNK Intellectual disability AD CDC42 -
Costello Syndrome: Clinical Phenotype, Genotype, and Management Guidelines
Received: 31 March 2019 Revised: 22 May 2019 Accepted: 1 June 2019 DOI: 10.1002/ajmg.a.61270 ORIGINAL ARTICLE Costello syndrome: Clinical phenotype, genotype, and management guidelines Karen W. Gripp1 | Lindsey A. Morse2 | Marni Axelrad3 | Kathryn C. Chatfield4 | Aaron Chidekel5 | William Dobyns6 | Daniel Doyle7 | Bronwyn Kerr8 | Angela E. Lin9 | David D. Schwartz3 | Barbara J. Sibbles10 | Dawn Siegel11 | Suma P. Shankar12 | David A. Stevenson13 | Mihir M. Thacker14 | K. Nicole Weaver15 | Sue M. White16 | Katherine A. Rauen12 1Division of Medical Genetics, Department of Pediatrics, A.I. duPont Hospital for Children, Wilmington, Delaware 2Ferre Institute, Binghamton, New York, New York 3Psychology Section, Department of Pediatrics, Baylor College of Medicine, Houston, Texas 4Section of Cardiology, Department of Pediatrics, University of Colorado School of Medicine, Aurora, Colorado 5Division of Pulmonology, Department of Pediatrics, A.I. duPont Hospital for Children, Wilmington, Delaware 6Division of Medical Genetics, Seattle Children's Hospital, Seattle, Washington 7Division of Endocrinology, A.I. duPont Hospital for Children, Wilmington, Delaware 8Manchester Center for Genomic Medicine, University of Manchester, Manchester, UK 9Medical Genetics Unit, Department of Pediatrics, MassGeneral Hospital for Children, Boston, Massachusetts 10Division of Pediatrics, Erasmus MC-Sophia Children's Hospital, Rotterdam, the Netherlands 11Department of Dermatology, Medical College of Wisconsin, Milwaukee, Wisconsin 12Division of Genomic Medicine, Department -
Presenters' Abstracts
7th International RASopathies Symposium: Pathways to Understanding – Expanding Knowledge, Enhancing Research and Therapeutic Discovery July 23-25, 2021 VIRTUAL MEETING Chairs Maria Kontaridis, PhD, Masonic Medical Research Institute Amy Roberts, MD, Boston Children’s Hospital Honorary Chairs: Marco Tartaglia, PhD, Bambino Gesù Children’s Hospital, and Martin Zenker, MD, Universitätsklinikum Magdeburg SESSION 1: Genes, Pathways and Genocopies Moderator: Katherine A. Rauen MD PhD, UC Davis, CA CDC42, RASA2, FBXW11, ZNF426, YWHAZ, TRAF7: Novel Martin Zenker MD, Institute of Human Genetics, RASopathy genes or not? University Hospital Magdeburg, Germany In this contribution, recently reported new associations of genes / gene variants with RASopathies or RASopathy-like phenotypes are reviewed. Contrary to the title in the agenda, ZNF426 was skipped, for which no explicit assertion has been made to be a RASopathy- associated gene, but instead RALA was included, which has been reported in 2019 as causing a RASopathy-like disorder. Assessment of the genes’ associations to RASopathies considered the number of observations, the quality of phenotypic overlap, the evidence of causality for the variant, the link to the RAS-MAPK pathway, and the experimental evidence for its dysregulation by the mutant proteins. For all six genes, the number of cases reported to have a RASopathy / RASopathy-like disorder is currently too small to establish robust case-level evidence for them to be novel RASopathy genes. For FBXW11and TRAF7, the RASopathy-like phenotype has only been observed in some of the mutation carriers; for CDC42, one specific mutation has been proposed to be associated with a Noonan-like phenotype, while others are not. -
Comprehensive Testing for NF1/SPRED1 and Other Rasopathies Genes at UAB
Medical Genomics Laboratory Department of Genetics Noonan syndrome/NSML Costello syndrome Cardio-facio-cutaneous syndrome Neurofibromatosis type 1 Legius syndrome Comprehensive Testing for NF1/SPRED1 and Other RASopathies Genes at UAB 720 20th Street S | KAUL Building - Suite 330 | Birmingham, Alabama 35294 Phone: 205-934-5562 | Fax: 205-996-2929 | email: [email protected] Testing for NF1/SPRED1 and other RASopathies genes at UAB a comprehensive menu allowing a tailored approach for patients with constitutional or mosaic presentations NF1-only NF1, SPRED1, PTPN11, NF1-SPRED1 DNA-based testing by NGS BRAF, CBL, HRAS, KRAS, (effective April 18th, 2016) Expanded NF1-RASopathy (16 genes) NRAS, MAP2K1, MAP2K2, non-NF1 RASopathy (15 genes) RAF1, RIT1, RASA2, SHOC2, RNA-based testing by Sanger Comprehensive NF1/SPRED1 testing SOS1 and SOS2 (16 genes) on blood and affected tissues BACKGROUND The RASopathies are a genetically heterogeneous group of disorders caused by mutations in the genes involved in the Ras-MAPK pathway. As a group, the RASopathies are one of the largest groups of malforma- tion syndromes known, affecting ~1:1,000 and include Neurofibromatosis type 1, Legius syndrome, Noonan syndrome, cardio-facio-cutaneous (CFC) syndrome, Noonan Syndrome with Multiple Lentigines (NSML/- LEOPARD) and Costello syndrome. Mutations in NF1 and SPRED1 are typically loss-of-function mutations and include the full spectrum of nonsense, missense, splice, frameshift, insertion-deletion, and copy number changes. Mutations in the other RASopathy genes are typically missense mutations or/and in-frame deletion/insertion of an amino acid. The Ras/MAPK pathway can have a profound deleterious effect on development as it plays a key role in differentiation, growth, senescence, and dysregulation. -
Cardiofaciocutaneous Syndrome and the Dermatologist's Contribution To
Case Letter Cardiofaciocutaneous Syndrome and the Dermatologist’s Contribution to Diagnosis Vanessa Barreto Rocha, MD; Rafael de Abreu Moraes, MD; Luciana Baptista Pereira, MD PRACTICE POINTS • RASopathies, a class of developmental disorders, are caused by mutations in genes that encode protein components of the RAS/mitogen-activated protein kinase pathway. Cardiofaciocutaneous (CFC) syndrome is a RASopathy. • Skin manifestations may help in differentiating CFC syndrome from other RASopathies. copy To the Editor: notA 3-year-old girl presented with skin xerosis and RASopathies, a class of developmental disorders, are follicular hyperkeratosis of the face, neck, trunk, caused by mutations in genes that encode protein and limbs (Figure 1). Facial follicular hyperkeratotic components of the RAS/mitogen-activated protein papules on an erythematous base were associated kinase (MAPK) pathway. Each syndrome exhibitsDo with alopecia of the eyebrows (ulerythema ophryo- its phenotypic features; however, because all of them genes). Hair was sparse and curly (Figure 2A). Facial cause dysregulation of the RAS/MAPK pathway, dysmorphic features included a prominent forehead there are numerous overlapping phenotypic features with bitemporal constriction, bilateral ptosis, a broad between the syndromes including cardiac defects, nasal base, lip contour in a Cupid’s bow, low-set cutaneous abnormalities, characteristic facial fea- earlobes with creases (Figure 2B), and a short and tures, neurocognitive impairment, and increased risk webbed neck. for developing some neoplastic disorders. Congenital heart disease, hypothyroidism, bilat- Cardiofaciocutaneous CUTIS(CFC) syndrome is a eral hydronephrosis, delayed motor development, RASopathy and is a genetic sporadic disease charac- and seizures were noted for the first 2 years. Brain terized by multiple congenital anomalies associated computed tomography detected a dilated ventricular with mental retardation. -
Clinical and Mutation Profile of Pediatric Patients with Rasopathy
Chen et al. Orphanet Journal of Rare Diseases (2019) 14:29 https://doi.org/10.1186/s13023-019-1010-z RESEARCH Open Access Clinical and mutation profile of pediatric patients with RASopathy-associated hypertrophic cardiomyopathy: results from a Chinese cohort Hao Chen1†, Xin Li2†, Xiaoliang Liu1,3†, Jian Wang4, Zhen Zhang5, Jinjin Wu1, Meirong Huang1, Ying Guo1, Fen Li1, Xiumin Wang2* and Lijun Fu1,5* Abstract Background: The RASopathies are a class of developmental disorders caused by germline mutations in the RAS- mitogen-activated protein kinase (MAPK) pathway. Hypertrophic cardiomyopathy (HCM) has been frequently described in children with RASopathy, but only a minority of patients have received formal genotyping. The purpose of this study was to evaluate the genetic basis and clinical outcome of pediatric patients with RASopathy-associated HCM. Methods: We retrospectively reviewed the mutation spectrum and clinical outcome of all the patients with RASopathy derived from 168 pediatric HCM cases referred to our institution between January 2012 and July 2018. Results: A heterozygous missense mutation in one of known RASopathy genes was identified in 46 unrelated children with HCM. Mutations in the PTPN11 gene were the most prevalent (19/46); this was followed by mutations in RAF1 (11/46), KRAS (5/46), RIT1 (4/46), BRAF (3/46), SOS1 (2/46), HRAS (1/46), and SHOC2 (1/46). Moreover, two compound heterozygous missense mutations in the LZTR1 gene were identified in one patient with the Noonan syndrome phenotype and HCM. The median age at the diagnosis of HCM was 3.0 months (range 0 months to 8.1 years). -
Herefore, Additional Strategies Are Needed to Target Even These Benign Rasopathy Manifestations
RASopathiesNet Thank You to Our Symposium Sponsors Funded in part by the following National Institutes of Health* through grant no. 1R13CA217038‐01: National Cancer Institute (NCI) Platinum National Center for Advancing Translational Science (NCATS) National Institute of Neurological Disorders and Stroke (NINDS) Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS) Gold Silver Bronze Exhibitor 5th International RASopathies Symposium: When Development and Cancer Intersect Table of Contents Hotel Floor Plan ..................................................................................................... 2 Agenda ................................................................................................................... 3 Speaker Abstracts .................................................................................................. 6 Junior Investigator Abstracts ............................................................................... 23 Poster Abstracts ................................................................................................... 27 Participant Biographies ........................................................................................ 31 Participant Directory ............................................................................................ 46 Advocate Posters ................................................................................................. 49 -
MEDICAL GENOMICS LABORATORY Expanded NF1-Rasopathy Panel
MEDICAL GENOMICS LABORATORY Expanded NF1-RASopathy panel by Next-Gen Sequencing and Deletion/Duplication Analysis of NF1 and SPRED1 (RAS-NG) Ordering Information Acceptable specimen types: • Blood (2-3ml EDTA; no time limitations associated with receipt) • Saliva (OGR-575 DNA Genotek; kits are provided upon request) • DNA (extracted from lymphocyte cells, a minimum of 3μg, O.D. value at 260:280nm ≥1.8) • Flash frozen tumor sent on dry ice • Fresh tumor or affected tissue biopsy, immersed in sterile culture media (PBS/RPMI) Turnaround time: 30 working days for blood, saliva, or DNA; 40 working days for fresh/frozen tumor Price, CPT codes, and Z code: $1,500 (USD – institutional/self-pay price); $2,500 for fresh/frozen tumor (USD – institutional/self-pay); CPT: 81442 and 81479 (x3) Z code: ZB6A6 Candidates for this test: Patients with clinical features suggestive of either NS, NSML, CFC, NF1, Legius syndrome or Noonan-like syndrome; patients with a clinical diagnosis of any of these syndromes that 720 Twentieth Street South, Suite 330 Phone: (205) 934-5562 Birmingham, Alabama 35294-0005 Fax: (205) 996-2929 www.uab.edu/medicine/genetics/medical-genomics-laboratory 1 MEDICAL GENOMICS LABORATORY previously tested negative in a subset of the genes included in this panel; patients with a diagnosis of Costello syndrome but no HRAS variant previously identified Specimen shipping and handling: • Please find acceptable specimen type above. • All submitted specimens must be sent at room temperature. DO NOT ship on ice. • Specimens must be packaged to prevent breakage and absorbent material must be included in the package to absorb liquids in the event that breakage occurs. -
Novel Insights in Noonan Syndrome Giulia Dodi and Francesco Chiarelli* Department of Paediatrics, University of Chieti, Italy
Pediatric Dimensions Review Article ISSN: 2397-950X Novel insights in Noonan syndrome Giulia Dodi and Francesco Chiarelli* Department of Paediatrics, University of Chieti, Italy Abstract Noonan syndrome is an inherited developmental disorder, classically identified by typical appearance, short stature, and cardiologic impairment. Nowadays it is recognized as part of RASopathies, i.e. a group of genetic disorders affecting the RAS-MAPK pathway. Diagnosis and clinical management of Noonan syndrome are challenging for the general paediatrician and children do require thorough multidisciplinary assessments throughout growth. Particularly, they must be referred to both paediatric endocrinologists and paediatric cardiologists. Prompt diagnosis is possible and genetic counselling for affected families is essential. This paper reviews clinical features and current treatment guidelines of Noonan syndrome in order to allow general paediatricians to better care children and adolescents with Noonan syndrome and to ensure a proper multidisciplinary approach. Introduction to 1 case per 2500 live births [1,4]. It is the most common cause of congenital heart disease after trisomy 21. Noonan syndrome (MIM 163950) (NS) is a genetic developmental disorder, historically identified by typical physical appearance Pathogenesis associated to short stature and congenital heart defects. Jaqueline NS is a genetic pathology due to sporadic or inherited mutations, Noonan, a paediatric cardiologist, was the first to characterize the with normal karyotype; most cases are transmitted in an autosomal syndrome: she identified nine children with remarkably similar faces, dominant manner and for these reasons males and females are equally short stature, significant chest deformities and pulmonary stenosis. affected. As similar autosomal dominant disorders, a significant Initially, NS was mixed up with Turner syndrome; the fact that males percentage of cases result from de novo mutations. -
MEDICAL GENOMICS LABORATORY Non-NF1 Rasopathy Panel By
MEDICAL GENOMICS LABORATORY Non-NF1 RASopathy panel by Next-Gen Sequencing and Deletion/Duplication Analysis of SPRED1 (NNP-NG) Ordering Information Acceptable specimen types: • Blood (3-6ml EDTA; no time limitations associated with receipt) • Saliva (OGR-575 DNA Genotek; kits are provided upon request) • DNA (extracted from lymphocyte cells; a minimum volume of 25μL at 3μg; O.D. of 260:280nm ≥1.8; must be extracted in a CLIA or equivalent certified lab) Turnaround time: 25 working days (RUSH option: 15 working days for additional $600 USD) Price, CPT codes, and Z code: $1,200 (USD – institutional/self-pay); CPT: 81442 and 81479 Z code: ZB6AD Candidates for this test: Patients with clinical features suggestive of either NS, NSML, CFC, NF1, Legius syndrome or Noonan-like syndrome with no mutation previously found by comprehensive RNA-based NF1+/- SPRED1 testing; patients with a clinical diagnosis of any of these syndromes that previously tested negative in a subset of the genes included in this panel; patients with a diagnosis of Costello syndrome but no HRAS mutation previously identified 720 Twentieth Street South, Suite 330 Phone: (205) 934-5562 Birmingham, Alabama 35294-0005 Fax: (205) 996-2929 www.uab.edu/medicine/genetics/medical-genomics-laboratory 1 MEDICAL GENOMICS LABORATORY Specimen shipping and handling: • Please find acceptable specimen type above. • All submitted specimens must be sent at room temperature. DO NOT ship on ice. • Specimens must be packaged to prevent breakage and absorbent material must be included in the package to absorb liquids in the event that breakage occurs. Also, the package must be shipped in double watertight containers (e.g.