Parallel Ecological Diversification in Antarctic Notothenioid Fishes As
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Examples of Amino Acid Changes in Notothenioids Methods To
Supplementary Information S1 Candidate genes: examples of amino acid changes in notothenioids Methods To evaluate notothenioid amino acid changes in a cross‐section of genes, six candidates from a range of functional categories of interest were chosen for a more detailed examination. The selected genes comprised small, well‐characterised genes present in multiple fish species (mainly teleosts, but in some cases these analyses were extended to the Actinopterygii when sequences from the spotted gar (Lepisosteus oculatus) were available) and available in at least two notothenioids. The amino acid composition of a series of six candidate genes were further analysed in depth at the amino acid sequence level. These genes were superoxide dismutase 1 (SOD1), neuroglobin, dihydrofolate reductase (both paralogues), p53 and calmodulin. Clustal X alignments were constructed from orthologues identified in the four Notothenioid transcriptomes along with other fish orthologues extracted from either SwissProt (Bateman et al., 2017) or Ensembl release 91 (Aken et al., 2017). Alignment data were visualised and annotated in BoxShade version 3.21 (https://embnet.vital‐ it.ch/software/BOX_form.html). Notothenioid‐specific changes were noted and the type of substitution in terms of amino acid properties was noted. Results A range of amino acid changes were revealed, from virtually complete conservation between the notothenioids and other fish (calmodulin), to one amino acid substitution present in neuroglobin and SOD1, to more extensive changes in dihydrofolate reductase, dihydrofolate reductase‐like and p53. In the case of the latter three genes, notothenioid‐specific changes were at positions that were often highly variable in temperate fish species with up to six different amino acid substitutions and did not result in a definable pattern of directional substitution. -
High Seas Bottom Trawl Fisheries and Their Impacts on the Biodiversity Of
High Seas Bottom Trawl Fisheries and their Impacts on the Biodiversity of Vulnerable Deep-Sea Ecosystems: Options for International Action Matthew Gianni Cover Photography The author wishes to thank the following contributors for use of their photography. Clockwise from top right: A rare anglerfish or sea toad (Chaunacidae: Bathychaunax coloratus), measuring 20.5 cm in total length, on the Davidson Seamount (2461 meters). Small, globular, reddish, cirri or hairy protrusions cover the body. The lure on the forehead is used to attract prey. Credit: NOAA/MBARI 2002 Industrial fisheries of Orange roughy. Emptying a mesh full of Orange roughy into a trawler. © WWF / AFMA, Credit: Australian Fisheries Management Authority White mushroom sponge (Caulophecus sp). on the Davidson Seamount (1949 meters). Credit: NOAA/MBARI 2002 Bubblegum coral (Paragorgia sp.) and stylasterid coral (Stylaster sp.) at 150 meters depth off Adak Island, Alaska. Credit: Alberto Lindner/NOAA Cover design: James Oliver, IUCN Global Marine Programme Printing of this publication was made possible through the generous support of HIGH SEAS BOTTOM TRAWL FISHERIES AND THEIR IMPACTS ON THE BIODIVERSITY OF VULNERABLE DEEP-SEA ECOSYSTEMS: OPTIONS FOR INTERNATIONAL ACTION Matthew Gianni IUCN – The World Conservation Union 2004 Report prepared for IUCN - The World Conservation Union Natural Resources Defense Council WWF International Conservation International The designation of geographical entities in this book, and the presentation of the material, do not imply the expression of any opinion whatsoever on the part of IUCN, WWF, Conservation International or Natural Resources Defense Council concerning the legal status of any country, territory, or area, or of its authorities, or concerning the delimitation of its frontiers or boundaries. -
A GUIDE to IDENTIFICATION of FISHES CAUGHT ALONG with the ANTARCTIC KRILL Author(S) 1) Iwami, T
Document No. [ to be completed by the Secretariat ] WG-EMM-07/32 Date submitted [ to be completed by the Secretariat ] 1 July 2007 Language [ to be completed by the Secretariat ] Original: English Agenda Agenda Item No(s): 4.3 Title A GUIDE TO IDENTIFICATION OF FISHES CAUGHT ALONG WITH THE ANTARCTIC KRILL Author(s) 1) Iwami, T. and 2) M. Naganobu Affiliation(s) 1) Laboratory of Biology, Tokyo Kasei Gakuin University 2) National Research Institute of Far Seas Fisheries Published or accepted for publication elsewhere? Yes No x If published, give details ABSTRACT A field key to early life stages of Antarctic fish caught along with the Antarctic krill is produced. The key includes 8 families and 28 species mainly from the Atlantic sector of the Southern Ocean and uses distinguished characters which permit rapid field identification. In some cases, however, it is impossible to discriminate among species of the same family by remarkable characters. A species key is not shown for such resemble species and a brief summary of the main morphological features of species and genera is provided. SUMMARY OF FINDINGS AS RELATED TO NOMINATED AGENDA ITEMS Agenda Item Finding 4.3 We are producing a practical field key to juvenile fish caught along with the Antarctic Scientific krill. To our knowledge more than 40 species of fish have been found as by-catch. Observation However, the number of dominant fish species found in the krill catch never exceeds 20 species. An useful and practical identification key to these dominant species maybe facilitate the quantitative assessment of fish in the krill catch. -
Modeling the Evolutionary Loss of Erythroid Genes by Antarctic Icefishes: Analysis of the Hemogen Gene Using Transgenic and Mutant Zebrafish
Modeling the evolutionary loss of erythroid genes by Antarctic icefishes: analysis of the hemogen gene using transgenic and mutant zebrafish by Michael J. Peters B.S. in Biology, University of New Hampshire A dissertation submitted to The Faculty of the College of Science of Northeastern University in partial fulfillment of the requirements for the degree of Doctor of Philosophy June 4, 2018 Dissertation directed by H. William Detrich, III Professor of Marine Molecular Biology and Biochemistry 1 Dedication For my Oma Oswald, who started this journey with me. 2 Acknowledgments I would like to thank my advisor, Dr. H William Detrich III, for encouraging me to be innovative and to pursue cutting-edge research. I thank the members of my committee, Drs. Erin Cram, Rebeca Rosengaus, Steven Vollmer, and Leonard Zon for their many helpful suggestions. I enjoyed working alongside Sandra Parker and Carmen Elenberger and appreciate their support. I also enjoyed working with many students including Caroline Benavides, Carolyn Dubnik, Carmen Elenberger, Laura Goetz, Urjeet Khanwalkar, Ben Moran, Alessia Santilli, Eileen Sheehan, Margaret Streeter, Kathleen Shusdock, and Sierra Smith. I especially thank Jonah Levin, who joined the lab as a high school student and has since continued working with me. I thank Corey Allard and Drs. Donald Yergeau and Jeffrey Grim for collecting samples that I used in my studies. I owe thanks to the staff of the Marine Science Center for their support, including Roberto Valdez, Sonya Simpson, Heather Sears, David Dawson, and Ryan Hill. I thank Drs. Joseph Ayers and Justin Ries for use of their facilities and Drs. -
Fishes of the Eastern Ross Sea, Antarctica
Polar Biol (2004) 27: 637–650 DOI 10.1007/s00300-004-0632-2 REVIEW Joseph Donnelly Æ Joseph J. Torres Tracey T. Sutton Æ Christina Simoniello Fishes of the eastern Ross Sea, Antarctica Received: 26 November 2003 / Revised: 16 April 2004 / Accepted: 20 April 2004 / Published online: 16 June 2004 Ó Springer-Verlag 2004 Abstract Antarctic fishes were sampled with 41 midwater in Antarctica is dominated by a few fish families and 6 benthic trawls during the 1999–2000 austral (Bathylagidae, Gonostomatidae, Myctophidae and summer in the eastern Ross Sea. The oceanic pelagic Paralepididae) with faunal diversity decreasing south assemblage (0–1,000 m) contained Electrona antarctica, from the Antarctic Polar Front to the continent (Ever- Gymnoscopelus opisthopterus, Bathylagus antarcticus, son 1984; Kock 1992; Kellermann 1996). South of the Cyclothone kobayashii and Notolepis coatsi. These were Polar Front, the majority of meso- and bathypelagic replaced over the shelf by notothenioids, primarily Ple- fishes have circum-Antarctic distributions (McGinnis uragramma antarcticum. Pelagic biomass was low and 1982; Gon and Heemstra 1990). Taken collectively, the concentrated below 500 m. The demersal assemblage fishes are significant contributors to the pelagic biomass was characteristic of East Antarctica and included seven and are important trophic elements, both as predators species each of Artedidraconidae, Bathydraconidae and and prey (Rowedder 1979; Hopkins and Torres 1989; Channichthyidae, ten species of Nototheniidae, and Lancraft et al. 1989, 1991; Duhamel 1998). Over the three species each of Rajidae and Zoarcidae. Common continental slope and shelf, notothenioids dominate the species were Trematomus eulepidotus (36.5%), T. scotti ichthyofauna (DeWitt 1970). Most members of this (32.0%), Prionodraco evansii (4.9%), T. -
Contribution to the Knowledge of the Parasitic Fauna of Fish Off Adelie Land, Antarctica
vol. 34, no. 4, pp. 429–435, 2013 doi: 10.2478/popore−2013−0023 Contribution to the knowledge of the parasitic fauna of fish off Adelie Land, Antarctica Krzysztof ZDZITOWIECKI 1 and Catherine OZOUF−COSTAZ 2 1 Instytut Parazytologii, Polska Akademia Nauk, ul. Twarda 51/55, 00−818 Warszawa, Poland <[email protected] > 2 Muséum National d’Histoire Naturelle, 43 Rue Cuvier, 75231 Paris Cedex 05, France <[email protected]> Abstract: In total, 42 fish belonging to 16 species were examined. All fish were infected. Parasitic worms were endoparasites: Digenea (eight species), Cestoda (three mixed groups of larval forms), Acanthocephala (two species) and Nematoda (one species in adult and one in larval stage, and two Contracaecum spp. in larval stage). Undetermined parasitic Cope− poda and Hirudinea were external parasites. Summing up previous and new data 25 species and mixed groups were found. Parasites in larval stage using fish as intermediate or paratenic hosts were more numerous than species maturing in fish. For example, 1913 nem− atodes Contracaecum spp. were recorded in one fish, whereas the digenean, Genolinea bowersi, was the most numerous maturing parasite (168 specimens in one fish). Key words: Antarctica, Adelie Land, fish parasites. Introduction Only limited data on the occurrence of helminths in fish at Adelie Land have previously been published. Ten species were recorded in fish examined in neigh− bouring sub−coastal waters, but without numerical data regarding infections (Johnston and Best 1937; Johnston 1938; Johnston and Mawson 1945; Prudhoe 1969; Prudhoe and Bray 1973). Recently Zdzitowiecki (1998, 2001), Zdzito− wiecki et al. (1998) and Laskowski et al. -
New Zealand Fishes a Field Guide to Common Species Caught by Bottom, Midwater, and Surface Fishing Cover Photos: Top – Kingfish (Seriola Lalandi), Malcolm Francis
New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing Cover photos: Top – Kingfish (Seriola lalandi), Malcolm Francis. Top left – Snapper (Chrysophrys auratus), Malcolm Francis. Centre – Catch of hoki (Macruronus novaezelandiae), Neil Bagley (NIWA). Bottom left – Jack mackerel (Trachurus sp.), Malcolm Francis. Bottom – Orange roughy (Hoplostethus atlanticus), NIWA. New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing New Zealand Aquatic Environment and Biodiversity Report No: 208 Prepared for Fisheries New Zealand by P. J. McMillan M. P. Francis G. D. James L. J. Paul P. Marriott E. J. Mackay B. A. Wood D. W. Stevens L. H. Griggs S. J. Baird C. D. Roberts‡ A. L. Stewart‡ C. D. Struthers‡ J. E. Robbins NIWA, Private Bag 14901, Wellington 6241 ‡ Museum of New Zealand Te Papa Tongarewa, PO Box 467, Wellington, 6011Wellington ISSN 1176-9440 (print) ISSN 1179-6480 (online) ISBN 978-1-98-859425-5 (print) ISBN 978-1-98-859426-2 (online) 2019 Disclaimer While every effort was made to ensure the information in this publication is accurate, Fisheries New Zealand does not accept any responsibility or liability for error of fact, omission, interpretation or opinion that may be present, nor for the consequences of any decisions based on this information. Requests for further copies should be directed to: Publications Logistics Officer Ministry for Primary Industries PO Box 2526 WELLINGTON 6140 Email: [email protected] Telephone: 0800 00 83 33 Facsimile: 04-894 0300 This publication is also available on the Ministry for Primary Industries website at http://www.mpi.govt.nz/news-and-resources/publications/ A higher resolution (larger) PDF of this guide is also available by application to: [email protected] Citation: McMillan, P.J.; Francis, M.P.; James, G.D.; Paul, L.J.; Marriott, P.; Mackay, E.; Wood, B.A.; Stevens, D.W.; Griggs, L.H.; Baird, S.J.; Roberts, C.D.; Stewart, A.L.; Struthers, C.D.; Robbins, J.E. -
Advances in MARINE BIOLOGY
Advances in MARINE BIOLOGY VOLUME 46 ThisPageIntentionallyLeftBlank Advances in MARINE BIOLOGY Edited by A. J. SOUTHWARD Marine Biological Association, The Laboratory, Citadel Hill, Plymouth, PL1 2PB, UK P. A. TYLER School of Ocean and Earth Science, University of Southampton, Southampton Oceanography Centre, European Way, Southampton, SO14 3ZH, UK C. M. YOUNG Oregon Institute of Marine Biology, University of Oregon P.O. Box 5389, Charleston, Oregon 97420, USA and L. A. FUIMAN Marine Science Institute, University of Texas at Austin, 750 Channel View Drive, Port Aransas, Texas 78373, USA Amsterdam – Boston – Heidelberg – London – New York – Oxford Paris – San Diego – San Francisco – Singapore – Sydney – Tokyo This book is printed on acid-free paper. ß 2003 Elsevier Science Ltd. All rights reserved. No part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopy, recording, or any information storage and retrieval system, without permission in writing from the Publisher. The appearance of the code at the bottom of the first page of a chapter in this book indicates the Publisher’s consent that copies of the chapter may be made for personal or internal use of specific clients. This consent is given on the condition, however, that the copier pay the stated per copy fee through the Copyright Clearance Center, Inc. (222 Rosewood Drive, Danvers, Massachusetts 01923), for copying beyond that permitted by Sections 107 or 108 of the U.S. Copyright Law. This consent does not extend to other kinds of copying, such as copying for general distribution, for advertising or promotional purposes, for creating new collective works, or for resale. -
(MSC) Announcement Comment Draft Report for Client Jeong Il
Marine Stewardship Council (MSC) Announcement Comment Draft Report for Client Jeong Il Corporation Antarctic krill fishery On Behalf of Jeong Il Corporation, Seoul Prepared by Control Union UK Ltd. September 2020 Authors: Henry Ernst Julian Addison Gudrun Gaudian Sophie des Clers Jung-Hee Cho Control Union UK Ltd. 56 High Street, Lymington, Hampshire, SO41 9AH United Kingdom Tel: 01590 613007 Fax: 01590 671573 Email: [email protected] Website: http.uk.controlunion.com Contents CONTENTS ...................................................................................................................................... 1 QA ............................................................................................................................................... 2 GLOSSARY ...................................................................................................................................... 1 1 EXECUTIVE SUMMARY ................................................................................................................ 3 2 REPORT DETAILS ....................................................................................................................... 6 2.1 Authorship and Peer Reviewers .............................................................................................. 6 2.2 Version details ......................................................................................................................... 8 3 UNIT(S) OF ASSESSMENT AND CERTIFICATION .................................................................................. -
A Biodiversity Survey of Scavenging Amphipods in a Proposed Marine Protected Area: the Filchner Area in the Weddell Sea, Antarctica
Polar Biology https://doi.org/10.1007/s00300-018-2292-7 ORIGINAL PAPER A biodiversity survey of scavenging amphipods in a proposed marine protected area: the Filchner area in the Weddell Sea, Antarctica Charlotte Havermans1,2 · Meike Anna Seefeldt2,3 · Christoph Held2 Received: 17 October 2017 / Revised: 23 February 2018 / Accepted: 24 February 2018 © Springer-Verlag GmbH Germany, part of Springer Nature 2018 Abstract An integrative inventory of the amphipod scavenging fauna (Lysianassoidea), combining morphological identifcations with DNA barcoding, is provided here for the Filchner area situated in the south-eastern Weddell Sea. Over 4400 lysianassoids were investigated for species richness and relative abundances, covering 20 diferent stations and using diferent sampling devices, including the southernmost baited traps deployed so far (76°S). High species richness was observed: 29 morphos- pecies of which 5 were new to science. Molecular species delimitation methods were carried out with 109 cytochrome c oxidase I gene (COI) sequences obtained during this study as well as sequences from specimens sampled in other Antarctic regions. These distance-based analyses (trees and the Automatic Barcode Gap Discovery method) indicated the presence of 42 lineages; for 4 species, several (cryptic) lineages were found. More than 96% of the lysianassoids collected with baited traps belonged to the species Orchomenella pinguides s. l. The diversity of the amphipod scavenger guild in this ice-bound ecosystem of the Weddell Sea is discussed in the light of bottom–up selective forces. In this southernmost part of the Weddell Sea, harbouring spawning and nursery grounds for silverfsh and icefshes, abundant fsh and mammalian food falls are likely to represent the major food for scavengers. -
Notothenioid Lepidonotothen Nudifrons
J Comp Physiol B (1999) 169: 597±604 Ó Springer-Verlag 1999 ORIGINAL PAPER I. Hardewig á L. S. Peck á H. O. PoÈ rtner Thermal sensitivity of mitochondrial function in the Antarctic Notothenioid Lepidonotothen nudifrons Accepted: 2 September 1999 Abstract The thermal sensitivity of mitochondrial Introduction function was investigated in the stenothermal Antarctic ®sh Lepidonotothen nudifrons. State 3 respiration in- The Antarctic marine fauna is constantly exposed to creases with increasing temperature between 0 °C and extremely low temperatures only ranging between 18 °C with a Q of 2.43±2.63. State 4 respiration in the 10 )1.8 °C and 1 °C. Organisms inhabiting the extreme presence of oligomycin, an inhibitor of mitochondrial Antarctic environment must have developed special ATP synthase, quanti®es the leakage of protons through physiological adaptations to overcome the adverse the inner mitochondrial membrane, which causes oxygen eects of low temperatures on metabolism. consumption without concomitant ATP production. Despite uncompensated low resting metabolic rates This parameter shows an unusually high Q of 10 (Clarke 1991), polar animals show a compensatory in- 4.21 0.42 (0±18 °C), which indicates that proton crease in tissue oxidative capacity (van Dijk et al. 1998), leakage does not depend merely on ion diusion but is which is re¯ected in higher mitochondrial densities an enzyme-catalysed process. The dierential thermal compared to temperate zone animals (Archer and sensitivity of oxidative phosphorylation (=state 3) and Johnston 1991; Johnston et al. 1998). Accordingly, some proton leakage (=state 4 in the presence of oligomycin) oxidative enzymes show 1.5 to 5-fold increased maximal leads to progressive uncoupling of the mitochondria and activities in Antarctic ®sh tissues (Crockett and Sidell decreased eciency of oxidative phosphorylation under 1990). -
Microsatellite Markers for the Notothenioid Fish Lepidonotothen
Papetti et al. BMC Res Notes (2016) 9:238 DOI 10.1186/s13104-016-2039-x BMC Research Notes SHORT REPORT Open Access Microsatellite markers for the notothenioid fish Lepidonotothen nudifrons and two congeneric species Chiara Papetti1*, Lars Harms1, Jutta Jürgens1, Tina Sandersfeld1,2, Nils Koschnick1, Heidrun Sigrid Windisch1,3, Rainer Knust1, Hans‑Otto Pörtner1 and Magnus Lucassen1 Abstract Background: Loss of genetic variability due to environmental changes, limitation of gene flow between pools of individuals or putative selective pressure at specific markers, were previously documented for Antarctic notothenioid fish species. However, so far no studies were performed for the Gaudy notothen Lepidonotothen nudifrons. Starting from a species-specific spleen transcriptome library, we aimed at isolating polymorphic microsatellites (Type I; i.e. derived from coding sequences) suitable to quantify the genetic variability in this species, and additionally to assess the population genetic structure and demography in nototheniids. Results: We selected 43,269 transcripts resulting from a MiSeq sequencer run, out of which we developed 19 primer pairs for sequences containing microsatellite repeats. Sixteen loci were successfully amplified in L. nudifrons. Eleven microsatellites were polymorphic and allele numbers per locus ranged from 2 to 17. In addition, we amplified loci identified from L. nudifrons in two other congeneric species (L. squamifrons and L. larseni). Thirteen loci were highly transferable to the two congeneric species. Differences in polymorphism among species were detected. Conclusions: Starting from a transcriptome of a non-model organism, we were able to identify promising polymor‑ phic nuclear markers that are easily transferable to other closely related species. These markers can be a key instru‑ ment to monitor the genetic structure of the three Lepidonotothen species if genotyped in larger population samples.