Genetic Analysis of Needle Morphological and Anatomical Traits Among Nature Populations of Pinus Tabuliformis

Total Page:16

File Type:pdf, Size:1020Kb

Genetic Analysis of Needle Morphological and Anatomical Traits Among Nature Populations of Pinus Tabuliformis Journal of Plant Studies; Vol. 6, No. 1; 2017 ISSN 1927-0461 E-ISSN 1927-047X Published by Canadian Center of Science and Education Genetic Analysis of Needle Morphological and Anatomical Traits among Nature Populations of Pinus Tabuliformis Mei Zhang1, Jing-Xiang Meng1, Zi-Jie Zhang1, Song-Lin Zhu2 & Yue Li1 1National Engineering Laboratory for Forest Tree Breeding, Key Laboratory for Genetics and Breeding of Forest Trees and Ornamental Plants of Ministry of Education, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China 2The Forestry Bureau of Xixian, China Correspondence: Mei Zhang, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China. E-mail: [email protected] Received: December 6, 2016 Accepted: January 10, 2017 Online Published: January 21, 2017 doi:10.5539/jps.v6n1p62 URL: http://dx.doi.org/10.5539/jps.v6n1p62 Abstract The morphological and anatomical traits of needles are important to evaluate geographic variation and population dynamics of conifer species. Variations of morphological and anatomical needle traits in coniferous species are considered to be the consequence of genetic evolution, and be used in geographic variation and ecological studies, etc. Pinus tabuliformis is a particular native coniferous species in northern and central China. For understanding its adaptive evolution in needle traits, the needle samplings of 10 geographic populations were collected from a 30yr provenience common garden trail that might eliminate site environment effect and show genetic variation among populations and 20 needle morphological and anatomical traits were involved. The results showed that variations among and within populations were significantly different over all the measured traits and the variance components within population were generally higher than that among populations in the most measured needle traits. Population heritabilities in all measured traits were higher than 0.7 in common garden sampling among populations. Needle traits were more significantly correlated with longitude than other factors. First five principal components accounted for 81.6% of the variation with eigenvalues greater than 1; the differences among populations were mainly dependent on needle width, stomatal density, section areas of vascular bundle, total resin canals, and mesophyll, as well as area ratio traits. Ten populations were divided into two categories by Euclidean distance. Variations in needle traits among the populations have shown systematic microevolution in terms of geographic impact on P. tabuliformis. This study would provide empirical data to characterize adaptation and genetic variation of P. tabuliformis, which should be more available for ecological studies. Keywords: genetic structure, needle, morphological and anatomical traits, geographic population, Pinus tabuliformis 1. Introduction Pinus tabuliformis is a native conifer species in northern and central China. It survived from the quaternary glacial with complex genetic components and climate factors widely changed in its distributions (Hewitt, 2000; Chen, 2007; Guo, 2008). Significantly variations among nature populations in P. tabuliformis have been reported on growth, wood property, physiology and propagation traits (Mao et al., 2009, Mao et al., 2011; Xu et al., 1991; Yuan et al., 2014; Niu et al., 2013; Yang et al., 2015). Evidences from molecular have indicated the genetic differentiation among populations bounded up with the geographic distance (Chen, 2007; Wang, 2010; Gao, 2009). Like other plant in temperate arid steppe zone, P. tabuliformis have formed phenotypic characters to resist lower temperature, water depletion and light conditions (Zhang, 2010; Liu, 2012). Needle is the most vigorous assimilation organs for conifer species, and the morphological and anatomical traits of needle are important references to plant taxonomy (Anna K. et al., 2013; Xing, 2014; Huang, 2016). Needle traits are closely associated with physiological and functional attributes of plants including photosynthesis, respiration, water metabolism, nutritional status, as well as stress resistance (Oleksyn et al., 1997; Eguchi et al., 2004; Wu, 2007; Mao et al., 2012). Phenotypic variations of needle morphological and anatomical characteristics were considered the results in physiological and adaptive genetic evolution (Anna K. et al., 2013; 62 http://jps.ccsenet.org Journal of Plant Studies Vol. 6, No. 1; 2017 Balkrishna et al., 2014), and have been widely used as available indicators in geographic variation, phylogenesis and evolutionary studies (Cole et al., 2007; Xing, 2014; Melville, 2002, B. Nikolić et al., 2013; Androsiuk Piotr et al., 2011; K. Boratynska et al., 2009). However, phenotypic variations of needle traits should be influenced by both environment and genetic impacts (Li, 2009; Xu,1991; Cole et al., 2008) in studies with samples from natural forests within species (Legoshchina et al., 2013; Michael et al., 2012), hardly tell the amount of genetic or environment contributions and limit in explaining the real effects on changes among populations. Variations of needle traits from population samples based on common garden trail could provide the genetic contributions among populations. The research and analysis of P. tabuliformis mainly involve the natural distribution characters of needles, and results that might be limited because of environmental variations at different population sites (Nikolić et al., 2013; Xing et al., 2014). In this study, we collected the needle samples from a 30yr provenience common garden trail with ten populations in P. tabuliformis in order to eliminate environment effects on needle traits among populations. The objectives of this study were to (1) reveal the variations in needle morphological and anatomical traits among populations; (2) illustrate the variations in needle traits among individuals within population; (3) evaluate the genetic and environment impacts on phenotypic variation for each needle trait; and (4) clarify the phylogenetic relationships among populations. This study provides theoretical and methodological reference for the conservation biology of populations in the coniferous morphological variation, ecological adaptability, system evolution and population genetics. Provide the basis for the use of coniferous morphological traits in each study area. 2. Materials and Methods 2.1 Sample Populations Ten geographic populations, located in typical habitat of P. tabuliformis, were involved (Fig. 1) in our experiment. Ten populations are as follows: Heilihe, Inner Mongolia(HLH); Dongling, Heibei(DL); Lingkongshan, Shanxi(LKS); Guandishan, Shanxi(GDS); Shangzhuang, Shanxi(SZ); Nanyang, Henan(NY); Luonan, Shannxi(LN); Shuanglong, Shannxi(SL); Xiaolongshan, Gansu(XLS); Huzhu, Qinghai(HZ). Figure 1. Location of ten P. tabuliformis populations sampled in North China The environmental information of sampled populations is shown in Table 1. The annual mean temperatures and precipitations in each geographic location of populations were obtained from www.worldclim.com (Hijmans et al., 2005). 63 http://jps.ccsenet.org Journal of Plant Studies Vol. 6, No. 1; 2017 Table 1. Sampling populations of P. tabuliformis Population Sample size Longitude(°E) Latitude (°N ) Altitude(m) Annual mean temperature(°C) Annual precipitation (mm) HZ 29 102°28′ 36°58′ 2300 2.4 443 XLS 21 106°00′ 34°20′ 1630 8.5 663 NY 14 112°03′ 33°32′ 810 12.6 776 LNGC 12 110°21′ 34°21′ 1220 10.0 720 HLH 25 118°58′ 42°17′ 1300 7.6 360 GDS 19 111°29′ 37°54′ 1500 1.5 561 SL 25 108°56′ 35°41′ 1650 10.2 543 LKS 13 112°02′ 36°37′ 1665 5.6 604 SZ 13 111°12′ 36°46′ 1660 6.2 545 DL 14 117°38′ 40°11′ 200 10.6 587 2.2 Field Experimental Design The common garden test of proveniences in P. tabuliformis was conducted in Xixian, Shanxi province (111°10′E, 36°48′N), the distribution central of the species and represented the general environmental conditions of the species. The experiment was established in 1981 with 2a seedlings from ten nature populations from the central to the edge of geographic distribution regions. A Randomized Complete Block Design (RCBD) with 6 blocks (replication), 24-individuals rectangular plot was set for the trail, 2m×2m in planting space. However, the remaining plants for each population were varied after 30yr nature selection. Needle samples from the provenience test were collected in September on 30yr plants in 2011, 11-30 individual trees for each population were involved from randomized sample trees. For each plant, 3 needles would be randomly selected for analysis. We examined a total of 20 traits involving morphology, anatomy and ratio of needle structures (Table 2). All the traits were adaptive- related and have been reported in previous researches (Huang et al., 2016; Xing et al., 2014; Zhao et al., 2008). 2.3 Measurement of Needle Traits Twenty needle traits were measured according to Xing’s work (Xing et al., 2014), including 16 directly measured morphological and anatomical traits and four area-ratio indices (the ratios between needle organizational structures in needle cross sections) (Table 2). (1) Morphological traits (Fig. 2A): seven morphological traits were measured, including needle length (NL, 1 cm); the width and thickness in the middle part of the needle (NW and NT, 0.1 mm); the number of stomatal rows on the front and back sides of the needle (CSRN and FSRN, measured by stereomicroscope);the number of stomata rows(NSR, calculated as NSR=( FSRN+CSRN));
Recommended publications
  • EVERGREEN TREES for NEBRASKA Justin Evertson & Bob Henrickson
    THE NEBRASKA STATEWIDE ARBORETUM PRESENTS EVERGREEN TREES FOR NEBRASKA Justin Evertson & Bob Henrickson. For more plant information, visit plantnebraska.org or retreenbraska.unl.edu Throughout much of the Great Plains, just a handful of species make up the majority of evergreens being planted. This makes them extremely vulnerable to challenges brought on by insects, extremes of weather, and diseases. Utilizing a variety of evergreen species results in a more diverse and resilient landscape that is more likely to survive whatever challenges come along. Geographic Adaptability: An E indicates plants suitable primarily to the Eastern half of the state while a W indicates plants that prefer the more arid environment of western Nebraska. All others are considered to be adaptable to most of Nebraska. Size Range: Expected average mature height x spread for Nebraska. Common & Proven Evergreen Trees 1. Arborvitae, Eastern ‐ Thuja occidentalis (E; narrow habit; vertically layered foliage; can be prone to ice storm damage; 20‐25’x 5‐15’; cultivars include ‘Techny’ and ‘Hetz Wintergreen’) 2. Arborvitae, Western ‐ Thuja plicata (E; similar to eastern Arborvitae but not as hardy; 25‐40’x 10‐20; ‘Green Giant’ is a common, fast growing hybrid growing to 60’ tall) 3. Douglasfir (Rocky Mountain) ‐ Pseudotsuga menziesii var. glauca (soft blue‐green needles; cones have distinctive turkey‐foot bract; graceful habit; avoid open sites; 50’x 30’) 4. Fir, Balsam ‐ Abies balsamea (E; narrow habit; balsam fragrance; avoid open, windswept sites; 45’x 20’) 5. Fir, Canaan ‐ Abies balsamea var. phanerolepis (E; similar to balsam fir; common Christmas tree; becoming popular as a landscape tree; very graceful; 45’x 20’) 6.
    [Show full text]
  • Pines in the Arboretum
    UNIVERSITY OF MINNESOTA MtJ ARBORETUM REVIEW No. 32-198 PETER C. MOE Pines in the Arboretum Pines are probably the best known of the conifers native to The genus Pinus is divided into hard and soft pines based on the northern hemisphere. They occur naturally from the up­ the hardness of wood, fundamental leaf anatomy, and other lands in the tropics to the limits of tree growth near the Arctic characteristics. The soft or white pines usually have needles in Circle and are widely grown throughout the world for timber clusters of five with one vascular bundle visible in cross sec­ and as ornamentals. In Minnesota we are limited by our cli­ tions. Most hard pines have needles in clusters of two or three mate to the more cold hardy species. This review will be with two vascular bundles visible in cross sections. For the limited to these hardy species, their cultivars, and a few hy­ discussion here, however, this natural division will be ignored brids that are being evaluated at the Arboretum. and an alphabetical listing of species will be used. Where neces­ Pines are readily distinguished from other common conifers sary for clarity, reference will be made to the proper groups by their needle-like leaves borne in clusters of two to five, of particular species. spirally arranged on the stem. Spruce (Picea) and fir (Abies), Of the more than 90 species of pine, the following 31 are or for example, bear single leaves spirally arranged. Larch (Larix) have been grown at the Arboretum. It should be noted that and true cedar (Cedrus) bear their leaves in a dense cluster of many of the following comments and recommendations are indefinite number, whereas juniper (Juniperus) and arborvitae based primarily on observations made at the University of (Thuja) and their related genera usually bear scalelikie or nee­ Minnesota Landscape Arboretum, and plant performance dlelike leaves that are opposite or borne in groups of three.
    [Show full text]
  • Biodiversity Conservation in Botanical Gardens
    AgroSMART 2019 International scientific and practical conference ``AgroSMART - Smart solutions for agriculture'' Volume 2019 Conference Paper Biodiversity Conservation in Botanical Gardens: The Collection of Pinaceae Representatives in the Greenhouses of Peter the Great Botanical Garden (BIN RAN) E M Arnautova and M A Yaroslavceva Department of Botanical garden, BIN RAN, Saint-Petersburg, Russia Abstract The work researches the role of botanical gardens in biodiversity conservation. It cites the total number of rare and endangered plants in the greenhouse collection of Peter the Great Botanical garden (BIN RAN). The greenhouse collection of Pinaceae representatives has been analysed, provided with a short description of family, genus and certain species, presented in the collection. The article highlights the importance of Pinaceae for various industries, decorative value of plants of this group, the worth of the pinaceous as having environment-improving properties. In Corresponding Author: the greenhouses there are 37 species of Pinaceae, of 7 geni, all species have a E M Arnautova conservation status: CR -- 2 species, EN -- 3 species, VU- 3 species, NT -- 4 species, LC [email protected] -- 25 species. For most species it is indicated what causes depletion. Most often it is Received: 25 October 2019 the destruction of natural habitats, uncontrolled clearance, insect invasion and diseases. Accepted: 15 November 2019 Published: 25 November 2019 Keywords: biodiversity, botanical gardens, collections of tropical and subtropical plants, Pinaceae plants, conservation status Publishing services provided by Knowledge E E M Arnautova and M A Yaroslavceva. This article is distributed under the terms of the Creative Commons 1. Introduction Attribution License, which permits unrestricted use and Nowadays research of biodiversity is believed to be one of the overarching goals for redistribution provided that the original author and source are the modern world.
    [Show full text]
  • Hybridization and Evolution in the Genus Pinus
    Hybridization and Evolution in the Genus Pinus Baosheng Wang Department of Ecology and Environmental Science Umeå 2013 Hybridization and Evolution in the Genus Pinus Baosheng Wang Department of Ecology and Environmental Science Umeå University, Umeå, Sweden 2013 This work is protected by the Swedish Copyright Legislation (Act 1960:729) Copyright©Baosheng Wang ISBN: 978-91-7459-702-8 Cover photo: Jian-Feng Mao Printed by: Print&Media Umeå, Sweden 2013 List of Papers This thesis is a summary and discussion of the following papers, which are referred to by their Roman numerals. I. Wang, B. and Wang, X.R. Mitochondrial DNA capture and divergence in Pinus provide new insights into the evolution of the genus. Submitted Manuscript II. Wang, B., Mao, J.F., Gao, J., Zhao, W. and Wang, X.R. 2011. Colonization of the Tibetan Plateau by the homoploid hybrid pine Pinus densata. Molecular Ecology 20: 3796-3811. III. Gao, J., Wang, B., Mao, J.F., Ingvarsson, P., Zeng, Q.Y. and Wang, X.R. 2012. Demography and speciation history of the homoploid hybrid pine Pinus densata on the Tibetan Plateau. Molecular Ecology 21: 4811–4827. IV. Wang, B., Mao, J.F., Zhao, W. and Wang, X.R. 2013. Impact of geography and climate on the genetic differentiation of the subtropical pine Pinus yunnannensis. PLoS One. 8: e67345. doi:10.1371/journal.pone.0067345 V. Wang, B., Mahani, M.K., Ng, W.L., Kusumi, J., Phi, H.H., Inomata, N., Wang, X.R. and Szmidt, A.E. Extremely low nucleotide polymorphism in Pinus krempfii Lecomte, a unique flat needle pine endemic to Vietnam.
    [Show full text]
  • Interspecific Variation and Phylogenic Architecture of Pinus Densata and the Hybrid of Pinus Tabuliformis×Pinus Yunnanensis In
    Journal of Botanical Research | Volume 03 | Issue 01 | January 2021 Journal of Botanical Research https://ojs.bilpublishing.com/index.php/jbr ARTICLE Interspecific Variation and Phylogenic Architecture of Pinus densata and the Hybrid of Pinus tabuliformis×Pinus Yunnanensis in the Pinus densata Habitat: an Electrical Impedance Spectra Perspective Fengxiang Ma1 Xiaoyang Chen2 Yue Li3* 1. School of Sciences, Beijing Forestry University, Beijing 100083, China 2. College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, Guangdong 510642, China 3. National Engineering Laboratory for Forest Tree Breeding, Key Laboratory for Genetics and Breeding of Forest Trees and Ornamental Plants of Ministry of Education, Beijing Forestry University, Beijing 100083, China ARTICLE INFO ABSTRACT Article history We evaluated a novel and non-destructive method of the electrical Received: 21 September 2020 impedance spectroscopy (EIS) to elucidate the genetic and evolutionary relationship of homoploid hybrid conifer of Pinus densata (P.d) and its Accepted: 16 October 2020 parental species Pinus tabuliformis (P.t) and Pinus yunnanensis (P.y), Published Online: 31 January 2021 as well as the artificial hybrids of the P.t and P.y. Field common garden tests of96 trees sampled from 760 seedlings and 480 EIS records of Keywords: 1,440 needles assessed the interspecific variation of the P.d, P.t, P.y and Pinus densata the artificial hybrids. We found that (1) EIS at different frequencies diverged significantly among germplasms; P.y
    [Show full text]
  • Identification and Expression Profiles of Srnas and Their Biogenesis And
    Niu et al. BMC Genomics (2015) 16:693 DOI 10.1186/s12864-015-1885-6 RESEARCH ARTICLE Open Access Identification and expression profiles of sRNAs and their biogenesis and action-related genes in male and female cones of Pinus tabuliformis Shi-Hui Niu, Chang Liu, Hu-Wei Yuan, Pei Li, Yue Li and Wei Li* Abstract Background: Small RNA (sRNA) play pivotal roles in reproductive development, and their biogenesis and action mechanisms are well characterised in angiosperm plants; however, corresponding studies in conifers are very limited. To improve our understanding of the roles of sRNA pathways in the reproductive development of conifers, the genes associated with sRNA biogenesis and action pathways were identified and analysed, and sRNA sequencing and parallel analysis of RNA ends (PARE) were performed in male and female cones of the Chinese pine (Pinus tabuliformis). Results: Based on high-quality reference transcriptomic sequences, 21 high-confidence homologues involved in sRNA biogenesis and action in P. tabuliformis were identified, including two different DCL3 genes and one AGO4 gene. More than 75 % of genes involved in sRNA biogenesis and action have higher expression levels in female than in male cones. Twenty-six microRNA (miRNA) families and 74 targets, including 46 24-nt sRNAs with a 5’ A, which are specifically expressed in male cones or female cones and probably bind to AGO4, were identified. Conclusions: The sRNA pathways have higher activity in female than in male cones, and the miRNA pathways are the main sRNA pathways in P. tabuliformis. The low level of 24-nt short-interfering RNAs in conifers is not caused by the absence of biogenesis-related genes or AGO-binding proteins, but most likely caused by the low accumulation of these key components.
    [Show full text]
  • Disturbances Influence Trait Evolution in Pinus
    Master's Thesis Diversify or specialize: Disturbances influence trait evolution in Pinus Supervision by: Prof. Dr. Elena Conti & Dr. Niklaus E. Zimmermann University of Zurich, Institute of Systematic Botany & Swiss Federal Research Institute WSL Birmensdorf Landscape Dynamics Bianca Saladin October 2013 Front page: Forest of Pinus taeda, northern Florida, 1/2013 Table of content 1 STRONG PHYLOGENETIC SIGNAL IN PINE TRAITS 5 1.1 ABSTRACT 5 1.2 INTRODUCTION 5 1.3 MATERIAL AND METHODS 8 1.3.1 PHYLOGENETIC INFERENCE 8 1.3.2 TRAIT DATA 9 1.3.3 PHYLOGENETIC SIGNAL 9 1.4 RESULTS 11 1.4.1 PHYLOGENETIC INFERENCE 11 1.4.2 PHYLOGENETIC SIGNAL 12 1.5 DISCUSSION 14 1.5.1 PHYLOGENETIC INFERENCE 14 1.5.2 PHYLOGENETIC SIGNAL 16 1.6 CONCLUSION 17 1.7 ACKNOWLEDGEMENTS 17 1.8 REFERENCES 19 2 THE ROLE OF FIRE IN TRIGGERING DIVERSIFICATION RATES IN PINE SPECIES 21 2.1 ABSTRACT 21 2.2 INTRODUCTION 21 2.3 MATERIAL AND METHODS 24 2.3.1 PHYLOGENETIC INFERENCE 24 2.3.2 DIVERSIFICATION RATE 24 2.4 RESULTS 25 2.4.1 PHYLOGENETIC INFERENCE 25 2.4.2 DIVERSIFICATION RATE 25 2.5 DISCUSSION 29 2.5.1 DIVERSIFICATION RATE IN RESPONSE TO FIRE ADAPTATIONS 29 2.5.2 DIVERSIFICATION RATE IN RESPONSE TO DISTURBANCE, STRESS AND PLEIOTROPIC COSTS 30 2.5.3 CRITICAL EVALUATION OF THE ANALYSIS PATHWAY 33 2.5.4 PHYLOGENETIC INFERENCE 34 2.6 CONCLUSIONS AND OUTLOOK 34 2.7 ACKNOWLEDGEMENTS 35 2.8 REFERENCES 36 3 SUPPLEMENTARY MATERIAL 39 3.1 S1 - ACCESSION NUMBERS OF GENE SEQUENCES 40 3.2 S2 - TRAIT DATABASE 44 3.3 S3 - SPECIES DISTRIBUTION MAPS 58 3.4 S4 - DISTRIBUTION OF TRAITS OVER PHYLOGENY 81 3.5 S5 - PHYLOGENETIC SIGNAL OF 19 BIOCLIM VARIABLES 84 3.6 S6 – COMPLETE LIST OF REFERENCES 85 2 Introduction to the Master's thesis The aim of my master's thesis was to assess trait and niche evolution in pines within a phylogenetic comparative framework.
    [Show full text]
  • Number 3, Spring 1998 Director’S Letter
    Planning and planting for a better world Friends of the JC Raulston Arboretum Newsletter Number 3, Spring 1998 Director’s Letter Spring greetings from the JC Raulston Arboretum! This garden- ing season is in full swing, and the Arboretum is the place to be. Emergence is the word! Flowers and foliage are emerging every- where. We had a magnificent late winter and early spring. The Cornus mas ‘Spring Glow’ located in the paradise garden was exquisite this year. The bright yellow flowers are bright and persistent, and the Students from a Wake Tech Community College Photography Class find exfoliating bark and attractive habit plenty to photograph on a February day in the Arboretum. make it a winner. It’s no wonder that JC was so excited about this done soon. Make sure you check of themselves than is expected to seedling selection from the field out many of the special gardens in keep things moving forward. I, for nursery. We are looking to propa- the Arboretum. Our volunteer one, am thankful for each and every gate numerous plants this spring in curators are busy planting and one of them. hopes of getting it into the trade. preparing those gardens for The magnolias were looking another season. Many thanks to all Lastly, when you visit the garden I fantastic until we had three days in our volunteers who work so very would challenge you to find the a row of temperatures in the low hard in the garden. It shows! Euscaphis japonicus. We had a twenties. There was plenty of Another reminder — from April to beautiful seven-foot specimen tree damage to open flowers, but the October, on Sunday’s at 2:00 p.m.
    [Show full text]
  • Pinus Caribaea Var. Bahamensis) in the Bahaman Archipelago
    ORBIT-OnlineRepository ofBirkbeckInstitutionalTheses Enabling Open Access to Birkbeck’s Research Degree output Conservation genetics and biogeography of the Caribbean pine (Pinus caribaea var. bahamensis) in the Bahaman archipelago https://eprints.bbk.ac.uk/id/eprint/40018/ Version: Full Version Citation: Sanchez, Michele (2012) Conservation genetics and biogeog- raphy of the Caribbean pine (Pinus caribaea var. bahamensis) in the Bahaman archipelago. [Thesis] (Unpublished) c 2020 The Author(s) All material available through ORBIT is protected by intellectual property law, including copy- right law. Any use made of the contents should comply with the relevant law. Deposit Guide Contact: email Conservation genetics and biogeography of the Caribbean pine (Pinus caribaea var. bahamensis) in the Bahaman archipelago Thesis submitted by Michele Sanchez For the degree of Doctor of Philosophy School of Biological and Chemical Sciences Birkbeck, University of London and Genetics Section, Jodrell Laboratory Royal Botanic Gardens, Kew September, 2012 Declaration I hereby confirm that this thesis is my own work and the material from other sources used in this work has been appropriately and fully acknowledged. Michele Sanchez London, September 2012 2 “All past and present organic beings constitute one grand natural system…” (Darwin 1859) I would like to dedicate this work to my husband; whose support, encouragement and patience have been a constant throughout the years. 3 Abstract The Bahaman archipelago contains large expanses of pine forests, where the endemic Caribbean pine Pinus caribaea var. bahamensis is the dominant species. This pine forest ecosystem is rich in species and also a valuable resource for the local economy. Small areas of old-growth forest still remain in the Turks and Caicos islands (TCI) and in some of the islands in the Bahamas; despite on-going severe infestation by pine tortoise scale insect Toumeyella parvicornis and high pine mortality in the former and intensive past commercial logging activities in the latter.
    [Show full text]
  • The Evolution of Cavitation Resistance in Conifers Maximilian Larter
    The evolution of cavitation resistance in conifers Maximilian Larter To cite this version: Maximilian Larter. The evolution of cavitation resistance in conifers. Bioclimatology. Univer- sit´ede Bordeaux, 2016. English. <NNT : 2016BORD0103>. <tel-01375936> HAL Id: tel-01375936 https://tel.archives-ouvertes.fr/tel-01375936 Submitted on 3 Oct 2016 HAL is a multi-disciplinary open access L'archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destin´eeau d´ep^otet `ala diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publi´esou non, lished or not. The documents may come from ´emanant des ´etablissements d'enseignement et de teaching and research institutions in France or recherche fran¸caisou ´etrangers,des laboratoires abroad, or from public or private research centers. publics ou priv´es. THESE Pour obtenir le grade de DOCTEUR DE L’UNIVERSITE DE BORDEAUX Spécialité : Ecologie évolutive, fonctionnelle et des communautés Ecole doctorale: Sciences et Environnements Evolution de la résistance à la cavitation chez les conifères The evolution of cavitation resistance in conifers Maximilian LARTER Directeur : Sylvain DELZON (DR INRA) Co-Directeur : Jean-Christophe DOMEC (Professeur, BSA) Soutenue le 22/07/2016 Devant le jury composé de : Rapporteurs : Mme Amy ZANNE, Prof., George Washington University Mr Jordi MARTINEZ VILALTA, Prof., Universitat Autonoma de Barcelona Examinateurs : Mme Lisa WINGATE, CR INRA, UMR ISPA, Bordeaux Mr Jérôme CHAVE, DR CNRS, UMR EDB, Toulouse i ii Abstract Title: The evolution of cavitation resistance in conifers Abstract Forests worldwide are at increased risk of widespread mortality due to intense drought under current and future climate change.
    [Show full text]
  • Supplementary Table S2 Details of 455 Conifer Species Used in the Phylogene�C and Physiological Niche Modelling to Es�Mate Drivers of Diversifica�On
    Supplementary Table S2 Details of 455 conifer species used in the phylogene�c and physiological niche modelling to es�mate drivers of diversifica�on. Shown are: the clade calcifica�on (10 and 42 clade); number of cleaned georeferenced presence records; the confusion matrix which describes the model fit in terms of true posi�ves, true nega�ves, false posi�ves and false nega�ves; and the es�mated niche area in quarter degree grid squares for the globe (projected) and for version of the globe where all environmental zones are equally common (resampled), see main text for further details. Clade classifica�on Confusion matrix niche area (# grid cells) 42 (68*) Number of True True False False Species 10 clades clades records posi�ves nega�ves posi�ves nega�ves Projected Resampled Abies alba 10 65 119 117 111 4 2 6658 7622 Abies amabilis 10 65 80 79 74 2 0 11783 13701 Abies bracteata 10 65 4 4 15 0 0 1610 1846 Abies concolor 10 65 98 90 86 8 8 13825 15410 Abies fabri 10 65 4 4 17 0 0 2559 2641 Abies fargesii 10 65 13 13 18 0 0 14450 15305 Abies firma 10 65 163 161 163 1 0 2270 2436 Abies fraseri 10 65 15 15 16 0 0 1914 2075 Abies grandis 10 65 77 75 70 2 2 11654 13629 Abies holophylla 10 65 12 12 16 1 0 23899 24592 Abies homolepis 10 65 31 31 34 0 0 791 851 Abies kawakamii 10 65 17 17 26 0 0 700 1164 Abies koreana 10 65 10 10 18 0 0 985 1048 Abies lasiocarpa 10 65 105 100 95 6 5 11422 12454 Abies magnifica 10 65 47 47 58 2 0 11882 14353 Abies mariesii 10 65 16 16 17 0 0 3833 4114 Abies nebrodensis 10 65 1 1 17 0 0 1094 973 Abies nephrolepis 10 65
    [Show full text]
  • <I>Pinus Henryi</I>
    ISSN (print) 0093-4666 © 2014. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/129.283 Volume 129(2), pp. 283–292 October–December 2014 A new species of Leptostroma on Pinus henryi from China Lan Zhang1, D.W. Minter2, Qing Li1, & Ying-Ren Lin3* 1 School of Life Science & 3 School of Forestry & Landscape Architecture, Anhui Agricultural University, West Changjiang Road 130, Hefei, Anhui 230036, China 2 CAB International, Bakeham Lane, Egham, Surrey, TW20 9TY, UK *Correspondence to: [email protected] Abstract — A coelomycetous fungus found on dead fallen secondary needles of Pinus henryi from Shennongjia forestry region of Hubei Province, China, is described, illustrated, and discussed. Habitat, morphology, and conidial development place it in the Rhytismataceae. It differs from other members of this family on the same substratum by having conidiomata with upper walls more than one cell thick, and is formally named as Leptostroma magnum sp. nov. Its conservation status is evaluated as Data Deficient. The type specimen is deposited in the Reference Collection of Forest Fungi of Anhui Agricultural University, China (AAUF). Key words — anamorph, anatomy Introduction During a study of microscopic fungi associated with trees in the Shennongjia forestry region (Hubei, China) in 2010, an interesting coelomycetous species was found on dead fallen needles of Pinus henryi. The fungus was collected again in repeat visits to the same site made in 2012 and 2013. It is described, illustrated, and discussed below. Materials & methods Specimens were collected from the leaf litter of Pinus henryi trees, which were more than 20 years old in 2010.
    [Show full text]