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Biochemical and Genetic Characterization of Rubber Production In BIOCHEMICAL AND GENETIC CHARACTERIZATION OF RUBBER PRODUCTION IN PRICKLY LETTUCE (Lactuca serriola L.) By JARED L. BELL A dissertation submitted in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY WASHINGTON STATE UNIVERSITY Molecular Plant Sciences Graduate Program MAY 2013 © Copyright by JARED LARS BELL, 2013 All Rights Reserved © Copyright by JARED LARS BELL, 2013 All Rights Reserved To the Faculty of Washington State University: The members of the Committee appointed to examine the dissertation of JARED LARS BELL find it satisfactory and recommend that it be accepted. ___________________________________ Ian C. Burke, Ph.D., Chair ___________________________________ Michael M. Neff, Ph.D., Co-Chair ___________________________________ Kimberly A. Garland-Campbell, Ph.D. ___________________________________ John K. Fellman, Ph.D. ii ACKNOWLEDGMENTS The collaborators of this research are grateful for funding provided by the United States Department of Agriculture Aegilops cylindrica – Biomass for Biofuels and Bioproducts from Weedy Plants (NIFA/USDA special grant) special grant. Work on this project has also been made possible by the technical support and expertise of the following people: Lydia Baxter- Potter, Nick Boydston, Arron Carter, Madeline Jacobson, Misha Manuchehri, Dennis Pittmann, Alan Raeder, Dilpreet Riar, Sachin Rustgi, Sherri Rynearson, Deven See, Jamin Smitchger, Randy Stevens all of the Crop and Soil Science Department, Washington State University. Assistance with NMR analysis was given by Bill Hiscox at the Washington State University NMR Center. NMR equipment was supported by NIH grants RR0631401 and RR12948, NSF grants CHE-9115282 and DBI-9604689 and the Murdock Charitable Trust. Rubber physical property analysis was performed with the guidance and support of Dr. Armando McDonald and Liqing Wei at the University of Idaho, Renewable Materials Program, College of Natural Resources. The authors would finally like to thank the staff, particularly Valerie Lynch-Holm, at the Franceschi Microscopy and Imaging Center, Washington State University for their technical assistance. iii BIOCHEMICAL AND GENETIC CHARACTERIZATION OF RUBBER PRODUCTION IN PRICKLY LETTUCE ( Lactuca serriola L.) Abstract by Jared L. Bell, Ph.D. Washington State University May 2013 Chair: Ian C. Burke Co-Chair: Michael M. Neff Natural rubber ( cis -1,4-polyisoprene) is one of the most important plant derived bio- polymers used in the manufacture of thousands of products. Plant originated rubber is unique in that the physical properties such as tensile strength, heat and impact resistance have yet to be reproduced by synthetic polyisoprene. While many plants are able to make rubber polymers, few can synthesize high molecular weight molecules. Prickly lettuce ( Lactuca serriola L.), a common weed, is one of the few. The following studies were conducted to assess the diversity, genetics, the chemical and physical properties as well as the microscopic elements related to prickly lettuce rubber production. Rubber from a collection of eastern Washington prickly lettuce biotypes revealed variation in rubber content and quality, although all biotypes synthesized high molecular weight rubber. Two distinct biotypes were crossed and selfed to generate an F2 segregating population. Plant phenotypes and genetic segregation of markers (EST-SSRs) were collected to discover marker-trait associations or quantitative trait loci (QTL). Four main QTL were discovered corresponding to the following traits; rubber molecular weight, leaf perimeter and leaf lobing, stem counts and growth habit, and herbivory. A single marker association was iv observed with the trait rubber polymer dispersity. Rubber extraction methods were evaluated and found that chemical extraction of dried, ground whole plant material yielded little rubber of low quality. Direct rubber extraction from tapped latex was the best extraction method. Rubber polymers were confirmed as cis -1,4-polyisoprene by nuclear magnetic resonance spectroscopy with little to no trans -polyisoprene detected. Physical property analysis showed that prickly lettuce rubber has properties equal to or better than rubber derived from Brazilian rubber tree. Prickly lettuce is a potential source of natural rubber having the desired physical properties for end-use production. Production feasibility will rely on rubber trait selection and extraction optimization to increase yield. Prickly lettuce can also serve as a model species to understand rubber biosynthesis as it is highly amenable to genetic and biochemical experimentation. These studies have extended the foundation of understanding towards the biosynthesis and utilization of rubber in prickly lettuce. v TABLE OF CONTENTS Page ACKNOWLEDGEMENTS .................................................................................................iii ABSTRACT ......................................................................................................................... iv LIST OF TABLES ............................................................................................................... xi LIST OF FIGURES ............................................................................................................ xii LIST OF FIGURES APPENDIX A ................................................................................... xiii CHAPTER 1: Prickly Lettuce as an Alternative Source of Natural Rubber 1. LITERATURE REVIEW ...................................................................................... 1 Natural Rubber Production ............................................................................. 1 Prickly Lettuce Rubber Production .................................................................. 4 Botanical Characteristics of Prickly Lettuce ................................................... 5 Herbicide Resistance in Prickly Lettuce .......................................................... 7 Agronomic and Climatic Requirements of Prickly Lettuce ............................ 7 Lettuce Genetic Resources ............................................................................... 8 Rubber History ............................................................................................... 10 Rubber Properties........................................................................................... 11 Anatomy and Biochemistry of Polyisoprene Synthesis ................................ 13 Rubber Extraction Methods ........................................................................... 16 Research Objectives ....................................................................................... 18 LITERATURE CITED ....................................................................................................... 19 CHAPTER 2: Rubber Content and Quality Screen of Twenty Eastern Washington Prickly Lettuce Biotypes vi 1. ABSTRACT ......................................................................................................... 34 2. INTRODUCTION ............................................................................................... 35 3. MATERIALS AND METHODS ......................................................................... 39 Plant Material and Latex Component Isolation ............................................. 40 Rubber Analysis ............................................................................................. 41 Statistical Analysis ......................................................................................... 42 4. RESULTS AND DISCUSSION .......................................................................... 42 5. CONCLUSIONS.................................................................................................. 46 Acknowledgements ........................................................................................ 47 LITERATURE CITED ....................................................................................................... 48 CHAPTER 3: Quantitative Trait Loci Associated with Rubber Production in Prickly Lettuce 1. ABSTRACT ......................................................................................................... 55 2. INTRODUCTION ............................................................................................... 56 3. MATERIALS AND METHODS ......................................................................... 58 Plant Material and Population Development ................................................. 58 Phenotypic Evaluation ................................................................................... 59 Prickly Lettuce Genetic Map ......................................................................... 61 Segregation Analysis/ Linkage Maps ............................................................ 63 Polymorphism ................................................................................................ 63 Trait Genetic Markers/ QTL Analysis ........................................................... 64 4. RESULTS AND DISCUSSION .......................................................................... 64 Phenotypic Assessment .................................................................................. 64 vii Linkage Maps................................................................................................. 65 Rubber Trait QTL .......................................................................................... 66 Other Beneficial Traits ..................................................................................
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