Actinomyces – Problem Or Not?

Total Page:16

File Type:pdf, Size:1020Kb

Actinomyces – Problem Or Not? Actinomyces Systematics, laboratory diagnosis and clinical aspects © by author ESCMID Online Lecture Library Trefor Morris, UK Anaerobe Reference Unit, Cardiff UK Anaerobe Reference Unit • Serves the whole of the UK • One of a select few world-wide • Remit of the ARU includes: 1. Identification & susceptibility testing 2. C. difficile ribotyping and surveillance 3. Clinical & technical advice 4. Maintenance of a reference collection of clinical isolates© c.30,000by author 5. Training ESCMID6. R&D, product Online evaluations Lecture Library Actinomyces • Non-sporing gram positive bacilli • Facultative anaerobes • Metronidazole resistant • Not acid-fast • Fermentative • Catalase variable© by author • Indole negative ESCMID• ~40 species, Online ~20 affecting Lecture humans Library Levels of Bacterial Classification • Kingdom – All bacteria are in the Prokaryotes • Subkingdom – Bacteria, Archea • Phylum – e.g. Firmicutes, Actinobacteria • Class – e.g. ‘Clostridia’, ‘Actinobacteria’ • Order – e.g. Clostridiales, Actinomycetales • Family – e.g. Actinomycetacae • Genus – This is the level that most bacteriologists deal with • Species - © by author • Sub-species - ESCMID Online Lecture Library Classification of Actinomyces • Phylum = Actinobacteria • Class = Actinobacteria • Order = Actinomycetales • Family = Actinomycetaceae • Genus = Actinomyces © by author ESCMID Online Lecture Library 1990 2001 human and animal species • A. hyovaginalis • A. bowdenii • A. bovis • A. canis • A. israelii • A. catuli • A. meyeri • A. europaeus • A. naeslundii • A. funkei • A. odontolyticus • A. graevenitzii • A. viscosus • A. marimammalium • A. denticolens • A. neuii (2 subspecies) • A. georgiae • A. radicidentis • A. gerencseriae • A. radingae • A. hordeovulneris © by author• A. suimastitidis • A. howellii • A. turicensis • A. slackii • A. urogenitalis ESCMID Online Lecture Library Additional species recognised by 2007 From human sources Animal sources A. cardiffensis A. canis A. dentalis A. catuli A. funkei A. coleocanis A. hongkongensis A. marimammalium A. nasicola A. ruminicola A. oricola A. suimastitidis A. radicidentis A. vaccimaxillae A. urogenitalis © by author ESCMID 2012 - Actinomyces Online Lecturenaturae - environmentalLibrary Not to be confused with … • Aerobic 'Actinomycetes' – Nocardia – Streptomyces • Mycobacteria • Corynebacteria • Other facultative anaerobic NSGPB (Propionibacteria, Lactobacilli, Bifidobacteria, Gardnerella…) © by author ESCMID Online Lecture Library …but closely related to… • Arcanobacterium • Actinobaculum • Varibaculum • Mobiluncus © by author ESCMID Online Lecture Library Normal habitats (Man and mammals) • Oral cavity (tongue, plaque, periodontal) • Gastro-intestinal tract (small numbers) • Genito-urinary tract • ? Lipid rich areas© byof skin author ESCMID Online Lecture Library Actinomycosis - historical Actinomycosis in humans - Wolf & Israel, 1891 © by author ‘LumpyESCMID jaw’ in Onlinecattle - Bollinger Lecture / Harz Library 1879 Spectrum of Disease Classically: cervico-facial Less commonly: thoracic, abdominal, pelvic sites Rarely: CNS, long bones, joints Some very rare presentations: Paediatric osteomyelitis Robinson et al, 2005. Pediatr Infect Dis J. 24:365-9. Midfacial osteomyelitis in a chronic cocaine abuser Talbott et al, 2001. ©Ear byNose authorthroat J. 80:738- 43. Gastric actinomycosis after gastric bypass ESCMIDFernandez-Acenero Online et al, 2004. Lecture Obes Surg. Library 14:1012-5 . Actinomycosis of the head and neck Swelling Osteoradionecrosis Chronic submandibular (ORN) of jaw abscesses with draining sinus tracts Other© sites by include: author Permanent disfigurement Brain abscess May be fatal if not treated Canaliculitis ESCMID OnlineDental abscess Lecture Library Actinomycosis – other sites Thoracic – lung, pleura, chest wall, spine Abdominal – stomach, liver, appendix, gallbladder, abdo. wall Pelvic – tubo-ovarian, intra-uterine, bladder, colon, psoas Other – 'punch' actinomycosis (fist), skin, long bones © by author ESCMID Online Lecture Library Pelvic actinomyces / IUCDs • Association of actinomyces-like organisms (ALOs) in Cx smears of IUCD-users noticed by cytologists in 1970s • Association has been proven but ? colonisation • Significance re. pelvic disease is much debated • ? Removal of IUCD - infection risk must© be by balanced author against risks of unwanted pregnancy, other contraceptives, re- ESCMIDinsertion of IUCDOnline Lecture Library IUCDs • ~20% colonisation with Actinomyces • Usage = common, pelvic infection = rare • ? Significance of Actinomyces spp. • BUT ? best specimen short of surgery British Faculty of Family Planning and Reproductive Healthcare recommendations, Cayley et al (1998) • Actino + symptoms = ©remove by IUCD,author treat, review • Actino – symptoms = counsel re. risks / symptoms, follow-up, ? leaveESCMID / remove / replaceOnline IUCD Lecture Library Agents of actinomycosis Producing granules / filamentous microcolonies: A. israelii A. gerencseriae (A. israelii serotype II) A. graevenitzii Propionibacterium propionicum (formerly Arachnia propionica) Usually smooth colonies, diphtheroid cells: ©A. meyeriby author A. naeslundii / viscosus complex A. odontolyticus ESCMID Online? other Lecture species Library Actinomyces in other infections • Periodontal disease / dental A. naeslundii, A. odontolyticus, caries A. israelii, A. gerencseriae • Superficial soft tissue A. turicensis, A. radingae, abscesses A. europaeus, A. funkei, A. • perianum, axilla, breast neuii, • pilonidal sinus Varibaculum cambriense • balanitis A. naeslundii, A. odontolyticus, • Bacteraemia / endocarditis A. turicensis, A. funkei • Chronic / complicated UTI © by authorActinobaculum spp., A. neuii • 'sterile' pyuria Hall ESCMIDV (2008). Actinomyces – gatheringOnline evidence of Lecturehuman colonization and Library infection. Anaerobe 14:1-7. Non-classical Actinomyces species Actinomyces turicensis • ? Flora of genital and GI tracts, skin • Common in superficial soft tissue abscesses: pilonidal, perianal, axilla, penile etc. • Rare cause of endocarditis © by author ESCMID Online Lecture Library © by author ESCMIDA. naeslundii Online LectureA. odontolyticus Library A. funkei A. neuii subsp. neuii subsp. anitratus • Habitats, clinical sources • ? Flora of skin similar to A. turicensis • From breast abscess etc. © by author ESCMID Online Lecture Library A. graevenitzii A. cardiffensis • ? Oral flora • ? Habitat • ? Rare cause of actinomycosis, • Sources as 'classic' Actinos. intra-oral, thoracic • ? significance Red under UV light © by author ESCMID Online Lecture Library Actinomyces spp. initiate a 'foreign body' response from the immune system Dense filamentous microcolonies (eosinophilic) Surrounded by basophilic material (bacterial and host) Granulomas / cavitations / sinuses develop Bacteria protected from further host responses Protected from antimicrobial activity Similar to TB interaction© by author ESCMID Online Lecture Library Early actinomycosis • Boil-like appearance Usually after trauma e.g. dental surgery, fist-fight Intra-oral effects • Early colonisers of oral cavity • Adhere to teeth and bacteria – help form plaque • ?? Significant in© dental by authorcaries • Periodontal diseases •ESCMID Root canal infectionsOnline Lecture Library Actinomycosis – clinical summary • Advanced cases are rare in the UK • Chronic, progressing slowly, spreading across fascia, disfiguring • Difficult to diagnose – may be mistaken for malignancy or TB • Prolonged / radical therapy required • 60% cervico-facial, 20% thoracic, 20% abdominal / pelvic© by author • relapse / treatment failure = common • ESCMIDMay be eventually Online fatal Lecture if not treatedLibrary Patient management • Surgery if necessary: drainage of exudate / debridement / excision of infected tissue • Long-term high-dose penicillin But… Advanced disease may be difficult to treat Relapses may occur months / years later Vague symptoms,© slowby authorprogression • difficult to diagnose Mis-diagnosis as cancer or TB is common ESCMID• may result Online in unnecessary Lecture therapy Library / surgery Laboratory diagnosis • Appropriate specimen • Direct microscopy • Culture • Identification • Antimicrobial© by susceptibilities author ESCMID Online Lecture Library Problems with Specimens • If disease is not overt it may be difficult to get specimen (CT guided needle biopsy, FNA may help) • Diagnosis = Ca. Tissue in formalin = histology only • Pus drained, but only swab sent to lab. • Dry swab = worst case • Unsuitable: oral swab,© by sputum, author vaginal swab (normal flora) • LackESCMID of clinical Online info. = may Lecture not culture Library for Actinos Primary lab. problems • Only found if looked for! – May need prolonged incubation (5-10 days) – May only grow anaerobically – May not grow on selective (Neo) plates © by author • Need good clinical indications ESCMID Online Lecture Library Culture • Invariably mixed • Plate microscope • Need selective media or hand lens can help – Metronidazole/Nalidixic acid – ? Mz / mupiricin – NOT neomycin or gentamicin – can use discs • Other orgs. may be inhibitory • >10 days AnO2 incubation© by author • Unfamiliar with morphologyESCMID Online Lecture Library Good specimens - 1 Cerebral abscess pus Direct Gram's stain of crushed granules © by author CultureESCMID = No growth Online @ 10 days. Lecture Prior antibiotics, Library old specimen . Good specimens - 2 Aspirate - liver abscess Direct Gram's stains granule free pus © by author ESCMID Online Lecture Library Direct microscopy
Recommended publications
  • Chemical Structures of Some Examples of Earlier Characterized Antibiotic and Anticancer Specialized
    Supplementary figure S1: Chemical structures of some examples of earlier characterized antibiotic and anticancer specialized metabolites: (A) salinilactam, (B) lactocillin, (C) streptochlorin, (D) abyssomicin C and (E) salinosporamide K. Figure S2. Heat map representing hierarchical classification of the SMGCs detected in all the metagenomes in the dataset. Table S1: The sampling locations of each of the sites in the dataset. Sample Sample Bio-project Site depth accession accession Samples Latitude Longitude Site description (m) number in SRA number in SRA AT0050m01B1-4C1 SRS598124 PRJNA193416 Atlantis II water column 50, 200, Water column AT0200m01C1-4D1 SRS598125 21°36'19.0" 38°12'09.0 700 and above the brine N "E (ATII 50, ATII 200, 1500 pool water layers AT0700m01C1-3D1 SRS598128 ATII 700, ATII 1500) AT1500m01B1-3C1 SRS598129 ATBRUCL SRS1029632 PRJNA193416 Atlantis II brine 21°36'19.0" 38°12'09.0 1996– Brine pool water ATBRLCL1-3 SRS1029579 (ATII UCL, ATII INF, N "E 2025 layers ATII LCL) ATBRINP SRS481323 PRJNA219363 ATIID-1a SRS1120041 PRJNA299097 ATIID-1b SRS1120130 ATIID-2 SRS1120133 2168 + Sea sediments Atlantis II - sediments 21°36'19.0" 38°12'09.0 ~3.5 core underlying ATII ATIID-3 SRS1120134 (ATII SDM) N "E length brine pool ATIID-4 SRS1120135 ATIID-5 SRS1120142 ATIID-6 SRS1120143 Discovery Deep brine DDBRINP SRS481325 PRJNA219363 21°17'11.0" 38°17'14.0 2026– Brine pool water N "E 2042 layers (DD INF, DD BR) DDBRINE DD-1 SRS1120158 PRJNA299097 DD-2 SRS1120203 DD-3 SRS1120205 Discovery Deep 2180 + Sea sediments sediments 21°17'11.0"
    [Show full text]
  • Genomic Homogeneity Between Mycobacterium Avium Subsp. Avium and Mycobacterium Avium Subsp
    University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln U.S. Department of Agriculture: Agricultural Publications from USDA-ARS / UNL Faculty Research Service, Lincoln, Nebraska 2003 Genomic homogeneity between Mycobacterium avium subsp. avium and Mycobacterium avium subsp. paratuberculosis belies their divergent growth rates John P. Bannantine ARS-USDA, [email protected] Qing Zhang 2University of Minnesota, Minneapolis, [email protected] Ling-Ling Li University of Minnesota, Minneapolis, [email protected] Vivek Kapur University of Minnesota, Minneapolis, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/usdaarsfacpub Bannantine, John P.; Zhang, Qing; Li, Ling-Ling; and Kapur, Vivek, "Genomic homogeneity between Mycobacterium avium subsp. avium and Mycobacterium avium subsp. paratuberculosis belies their divergent growth rates" (2003). Publications from USDA-ARS / UNL Faculty. 2372. https://digitalcommons.unl.edu/usdaarsfacpub/2372 This Article is brought to you for free and open access by the U.S. Department of Agriculture: Agricultural Research Service, Lincoln, Nebraska at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Publications from USDA-ARS / UNL Faculty by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. BMC Microbiology BioMed Central Research article Open Access Genomic homogeneity between Mycobacterium avium subsp. avium and Mycobacterium avium subsp. paratuberculosis belies their
    [Show full text]
  • Nomenclature of Bacteria with Special Reference to the Order Actinomycetales'
    INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY VOL. 21, No. 2 April 1971, pp. 197-206 Printed in U.S.A. Copyright 0 1971 International Association of Microbiological Societies Nomenclature of Bacteria with Special Reference to the Order Actinomycetales' THOMAS G. PRIDHAM Northern Regional Research Laboratory,z Peoria, Illinois 61604 The number of names for streptomycetes that is in the scientific literature now is exceeded only by those for organisms placed in the genus Bacillus Cohn 1872. The genus Streptomyces Waksman and Henrici 1943 may well rank in first place if names in the patent and quasiscientific literature are included. The overwhelming number of names and the lack of a precise definition of a particular species or subspecies, of type or neotype strains, and of certain essential details have brought about problems in assessing the status of many names. The major problems encountered in a 2-year study are discussed, and a simple format is suggested, use of which may help to clarify future nomenclature. Twelve years ago, I presented (29) before ture of Bacteria (20); type strains, where these the First Latin-American Congress for Micro- can be located and obtained, are being as- biology held at Mexico, D.F., some suggestions sembled and recharacterized (35 -38) through on establishing a logical order in streptomycete the International Streptomyces Project, and a classification. minumum set of substrata and tests have been (i) Compilation and evaluation of available recommended for description of A ctino- literature on nomenclature and characterization mycetales in patents (1 1, 12). of streptomycetes. One item upon which insufficient attention (ii) Decision on the proper code of nomen- has been focused is nomenclature.
    [Show full text]
  • Glycomyces, a New Genus of the Actinomycetales D
    INTERNATIONALJOURNAL OF SYSTEMATICBACTERIOLOGY, Oct. 1985, p. 417-421 Vol. 35, No. 4 0020-7713/85/040417-05$02.00/0 Glycomyces, a New Genus of the Actinomycetales D. P. LABEDA,l* R. T. TESTA,2 M. P. LECHEVALIER,3 AND H. A. LECHEVALIER3 U. S. Department of Agriculture, Agricultural Research Sewice, Northern Regional Research Center, Peoria, Illinois 61604'; Medical Research Division, American Cyanamid Co., Pearl River, New York 109652; and Waksman Institute of Microbiology, Rutgers, The State University, Piscataway, New Jersey 088543 We describe two species of the new genus Glycomyces, Glycomyces harbinensis sp. nov. and Glycomyces rutgersensis sp. nov. Members of this genus are aerobic, produce nonfragmenting vegetative hyphae, and form chains of conidia on aerial sporophores. The cell walls are type I1 (rneso-diaminopimelic acid and glycine are present), and the whole-cell sugar patterns are type D (xylose and arabinose are present). The phospholipid pattern of both species is type P-I (no nitrogenous phospholipids). The guanine-plus-cytosine content of the deoxyribonucleic acid ranges from 71 to 73 mol%. The type strain of type species G. harbinensis is strain NRRL 15337 (= LL-D05139), and the type strain of G. rutgersensis is strain NRRL B-16106 (= LL-1-20). During the course of isolation of actinomycete strains Gordon et al. (8). Esculin hydrolysis was evaluated by the from soil for an antibiotic screening program, a novel isolate method of Williams et al. (27), and Tween 80 hydrolysis was was obtained from a soil sample from Harbin, People's evaluated by the method of Sierra (26). Phosphatase activity Republic of China.
    [Show full text]
  • Biofilm Degradation of Nontuberculous Mycobacteria
    processes Article Biofilm Degradation of Nontuberculous Mycobacteria Formed on Stainless Steel Following Treatment with Immortelle (Helichrysum italicum) and Common Juniper (Juniperus communis) Essential Oils Dolores Peruˇc 1,* , Dalibor Brozni´c 2 , Željka Maglica 3, Zvonimir Marijanovi´c 4, Ljerka Karleuša 5 and Ivana Gobin 1 1 Department of Microbiology and Parasitology, Faculty of Medicine, University of Rijeka, 51000 Rijeka, Croatia; [email protected] 2 Department of Medical Chemistry, Biochemistry and Clinical Chemistry, Faculty of Medicine, University of Rijeka, 51000 Rijeka, Croatia; [email protected] 3 Department of Biotechnology, University of Rijeka, 51000 Rijeka, Croatia; [email protected] 4 Department of Food Technology and Biotechnology, Faculty of Chemistry and Technology, University of Split, 21000 Split, Croatia; [email protected] 5 Department of Physiology and Immunology, Faculty of Medicine, University of Rijeka, 51000 Rijeka, Croatia; [email protected] * Correspondence: [email protected]; Tel.: +385-(0)51-651-145; Fax: +385-(0)51-651-177 Abstract: Nontuberculous mycobacteria, like other opportunistic premise plumbing pathogens, pro- duce resistant biofilms on various surfaces in the plumbing system including pipes, tanks, and fittings. Citation: Peruˇc,D.; Brozni´c,D.; Since standard methods of water disinfection are ineffective in eradicating biofilms, research into new Maglica, Ž.; Marijanovi´c,Z.; Karleuša, agents is necessary. Essential oils (EOs) have great potential as anti-biofilm agents. Therefore, the pur- L.; Gobin, I. Biofilm Degradation of pose of this research was to investigate the potential anti-biofilm effect of common juniper (Juniperus Nontuberculous Mycobacteria communis) and immortelle (Helichrysum italicum) EOs. Minimum inhibitory concentrations (MIC), Formed on Stainless Steel Following Treatment with Immortelle minimum bactericidal concentrations (MBC), and minimum effective concentrations of EOs on My- (Helichrysum italicum) and Common cobacterium avium, M.
    [Show full text]
  • Table S5. the Information of the Bacteria Annotated in the Soil Community at Species Level
    Table S5. The information of the bacteria annotated in the soil community at species level No. Phylum Class Order Family Genus Species The number of contigs Abundance(%) 1 Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus 1749 5.145782459 2 Bacteroidetes Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter sedentarius 1538 4.52499338 3 Gemmatimonadetes Gemmatimonadetes Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonesis 1020 3.000970902 4 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas indica 797 2.344876284 5 Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus piscium 542 1.594633558 6 Actinobacteria Thermoleophilia Solirubrobacterales Conexibacteraceae Conexibacter Conexibacter woesei 471 1.385742446 7 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas taxi 430 1.265115184 8 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas wittichii 388 1.141545794 9 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. FARSPH 298 0.876754244 10 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sorangium cellulosum 260 0.764953367 11 Proteobacteria Deltaproteobacteria Myxococcales Polyangiaceae Sorangium Sphingomonas sp. Cra20 260 0.764953367 12 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas panacis 252 0.741416341
    [Show full text]
  • The Power of Partnership » AP2.Com MOLECULAR TEST MENU
    The Power of Partnership » AP2.com MOLECULAR TEST MENU AP2 provides the most comprehensive Women’s Health Care molecular menu. AP2 can perform most of these tests from our scientifically developed UniSwabTM as well as from the liquid based platforms SurePathTM and ThinPrep®. The following is a comprehensive list of molecular tests available from AP2. If one molecular test is ordered upfront, add-on testing is available for 45 days on UniSwabTM, ThinPrep® and SurePathTM. If no molecular test is ordered up front, add-on testing is available for 28 days on UniSwabTM and ThinPrep®. HPV and CT/NG testing can be added on to ThinPrep® specimens prior to 28 days after collection. UniSwab ThinPrep SurePath 70142 Atopobium vaginae 70142 Atopobium vaginae 70142 Atopobium vaginae 60135 Bacterial vaginosis panel 60135 Bacterial vaginosis panel 60135 Bacterial vaginosis panel (Mobiluncus mulieris and M. curtisii, Gardnerella (Mobiluncus mulieris and M. curtisii, Gardnerella (Mobiluncus mulieris and M. curtisii, Gardnerella vaginalis, Atopobium vaginae, Mycoplasma vaginalis, Atopobium vaginae, Mycoplasma vaginalis, Atopobium vaginae, Mycoplasma genitalium and hominis) genitalium and hominis) genitalium and hominis) 70125 Bacteroides fragilis 70125 Bacteroides fragilis 70125 Bacteroides fragilis 70164 BVAB2 70164 BVAB2 70164 BVAB2 70551 Candida albicans 70551 Candida albicans 70551 Candida albicans 70559 Candida glabrata 70559 Candida glabrata 70559 Candida glabrata 70561 Candida kefyr 70561 Candida kefyr 70561 Candida kefyr 70560 Candida krusei 70560
    [Show full text]
  • The Relationship Between KRAS Gene Mutation and Intestinal Flora in Tumor Tissues of Colorectal Cancer Patients
    1085 Original Article Page 1 of 9 The relationship between KRAS gene mutation and intestinal flora in tumor tissues of colorectal cancer patients Xinke Sui1#, Yan Chen1#, Baojun Liu2, Lianyong Li1, Xin Huang1, Min Wang1, Guodong Wang1, Xiaopei Gao1, Lu Zhang1, Xinwei Bao1, Dengfeng Yang3, Xiaoying Wang1, Changqing Zhong1 1Department of Gastroenterology, PLA Strategic Support Force Characteristic Medical Center, Beijing, China; 2Department of Medical Oncology, The Second Affiliated Hospital of Shandong First Medical University, Taian, China; 3Laboratory department, Mian County Hospital, Mian, China Contributions: (I) Conception and design: X Sui, Y Chen, C Zhong, X Wang; (II) Administrative support: L Li; (III) Provision of study materials or patients: B Liu, D Yang; (IV) Collection and assembly of data: X Gao, L Zhang, X Bao; (V) Data analysis and interpretation: X Sui, Y Chen, C Zhong, X Wang, X Huang, M Wang, G Wang; (VI) Manuscript writing: All authors; (VII) Final approval of manuscript: All authors. #These authors contributed equally to this work. Correspondence to: Changqing Zhong; Xiaoying Wang. Department of Gastroenterology, PLA Strategic Support Force Characteristic Medical Center, Beijing, China. Email: [email protected]; [email protected]. Background: Colorectal cancer is among the most prominent malignant tumors endangering human health, with affected populations exhibiting an increasingly younger trend. The Kirsten ras (KRAS) gene acts as a crucial regulator in this disease and influences multiple signaling pathways. In the present study, the KRAS gene mutation-induced alteration of intestinal flora in colorectal cancer patients was explored, and the intestinal microbes that may be affected by the KRAS gene were examined to provide new insights into the diagnosis and treatment of colorectal cancer.
    [Show full text]
  • Human Microbiota Network: Unveiling Potential Crosstalk Between the Different Microbiota Ecosystems and Their Role in Health and Disease
    nutrients Review Human Microbiota Network: Unveiling Potential Crosstalk between the Different Microbiota Ecosystems and Their Role in Health and Disease Jose E. Martínez †, Augusto Vargas † , Tania Pérez-Sánchez , Ignacio J. Encío , Miriam Cabello-Olmo * and Miguel Barajas * Biochemistry Area, Department of Health Science, Public University of Navarre, 31008 Pamplona, Spain; [email protected] (J.E.M.); [email protected] (A.V.); [email protected] (T.P.-S.); [email protected] (I.J.E.) * Correspondence: [email protected] (M.C.-O.); [email protected] (M.B.) † These authors contributed equally to this work. Abstract: The human body is host to a large number of microorganisms which conform the human microbiota, that is known to play an important role in health and disease. Although most of the microorganisms that coexist with us are located in the gut, microbial cells present in other locations (like skin, respiratory tract, genitourinary tract, and the vaginal zone in women) also play a significant role regulating host health. The fact that there are different kinds of microbiota in different body areas does not mean they are independent. It is plausible that connection exist, and different studies have shown that the microbiota present in different zones of the human body has the capability of communicating through secondary metabolites. In this sense, dysbiosis in one body compartment Citation: Martínez, J.E.; Vargas, A.; may negatively affect distal areas and contribute to the development of diseases. Accordingly, it Pérez-Sánchez, T.; Encío, I.J.; could be hypothesized that the whole set of microbial cells that inhabit the human body form a Cabello-Olmo, M.; Barajas, M.
    [Show full text]
  • Nontuberculous Mycobacteria (Ntm)
    Ting-Shu Wu, M.D. Infection Control Committee Infect Dis, Int Med, Chang Gung Memorial Hospital, Linkou Medical Center, Tao-Yuan, Taiwan NTM Other than M. tuberculosis, M. africanum, M. bovis, M. caprae, M. microti, M. canettii, M. mungi, M. orygis, and M. pinnipedii (M. tuberculosis complex), and M. leprae. Previous names: atypical mycobacteria, mycobacteria other than M. tuberculosis (MOTT) Taxonomic Tree M. tuberculosis complex Mycobacteriaceae Mycobacterium M. leprae Nocardia NTM Actinomycetales Actinomycetaceae Actinomyces S. griseus Streptomycetaceae Streptomyces S. mediterranei Currently recognized species of the genus Mycobacteria isolated form humans Group Obligatory Facultative Potential Saprophyte Strict pathogens M. africanum M. bovis M. leprae M. tuberculosis M. ulcerans Photochromogens M. asciaticum M. kansasii M. marinum M. simiae Scotochromogens M. scrofulaceum M. gordonae M. szulgai M. flavescens M. xenopi Nonchromogens M. genavense M. avium M. gastri M. haemophilum M. nonchromogenicum M. intracellulare M. terrae M. malmoense M. triviale M. shimoidei Rapid growers M. chelonae M. fallax M. agri…….. M. fortuitum M. smegmatis Strict animal M. farcinogens M. microti pathogens M. lepraemurium M. paratuberculosis M. porcinum M. senegalense Runyon classification Class I (photochromogens) Class II (scotochromogens) Class III (nonchromogens) Class IV ( rapid growers) Structure A: plasma membrane B: complex polymer C: peptidoglycans D: arabinogalactans E: mycolic acids F: methoxy type & keto type G: glycolipid H:
    [Show full text]
  • Arcanobacterium Haemolyticum Type Strain (11018)
    Lawrence Berkeley National Laboratory Recent Work Title Complete genome sequence of Arcanobacterium haemolyticum type strain (11018). Permalink https://escholarship.org/uc/item/03f632gf Journal Standards in genomic sciences, 3(2) ISSN 1944-3277 Authors Yasawong, Montri Teshima, Hazuki Lapidus, Alla et al. Publication Date 2010-09-28 DOI 10.4056/sigs.1123072 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Standards in Genomic Sciences (2010) 3:126-135 DOI:10.4056/sigs.1123072 Complete genome sequence of Arcanobacterium T haemolyticum type strain (11018 ) Montri Yasawong1, Hazuki Teshima2,3, Alla Lapidus2, Matt Nolan2, Susan Lucas2, Tijana Glavina Del Rio2, Hope Tice2, Jan-Fang Cheng2, David Bruce2,3, Chris Detter2,3, Roxanne Tapia2,3, Cliff Han2,3, Lynne Goodwin2,3, Sam Pitluck2, Konstantinos Liolios2, Natalia Ivanova2, Konstantinos Mavromatis2, Natalia Mikhailova2, Amrita Pati2, Amy Chen4, Krishna Palaniappan4, Miriam Land2,5, Loren Hauser2,5, Yun-Juan Chang2,5, Cynthia D. Jeffries2,5, Manfred Rohde1, Johannes Sikorski6, Rüdiger Pukall6, Markus Göker6, Tanja Woyke2, James Bristow2, Jonathan A. Eisen2,7, Victor Markowitz4, Philip Hugenholtz2, Nikos C. Kyrpides2, and Hans-Peter Klenk6* 1 HZI – Helmholtz Centre for Infection Research, Braunschweig, Germany 2 DOE Joint Genome Institute, Walnut Creek, California, USA 3 Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA 4 Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA 5 Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA 6 DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany 7 University of California Davis Genome Center, Davis, California, USA *Corresponding author: Hans-Peter Klenk Keywords: obligate parasite, human pathogen, pharyngeal lesions, skin lesions, facultative anaerobe, Actinomycetaceae, Actinobacteria, GEBA Arcanobacterium haemolyticum (ex MacLean et al.
    [Show full text]
  • In Cyanobacteria
    International Journal of Environmental Research and Public Health Article Molecular Probes to Evaluate the Synthesis and Production Potential of an Odorous Compound (2-methylisoborneol) in Cyanobacteria Keonhee Kim 1, Youngdae Yoon 1,2, Hyukjin Cho 3 and Soon-Jin Hwang 1,2,* 1 Human and Eco-Care Center, Department of Environmental Health Science, Konkuk University, Seoul 05029, Korea; [email protected] (K.K.); [email protected] (Y.Y.) 2 Department of Environmental Health Science, Konkuk University, Seoul 05029, Korea 3 Hangang River Regional Division, Department of Water Resources Management, K-Water, Gwacheon 13841, Korea; [email protected] * Correspondence: [email protected]; Tel.: +82-2-450-3748 Received: 30 January 2020; Accepted: 14 March 2020; Published: 16 March 2020 Abstract: The volatile metabolite, 2-Methylisoborneol (2-MIB) produced by cyanobacterial species, causes odor and taste problems in freshwater systems. However, simple identification of cyanobacteria that produce such off-flavors may be insufficient to establish the causal agent of off-flavor-related problems as the production-related genes are often strain-specific. Here, we designed a set of primers for detecting and quantifying 2-MIB-synthesizing cyanobacteria based on mibC gene sequences (encoding 2-MIB synthesis-catalyzing monoterpene cyclase) from various Oscillatoriales and Synechococcales cyanobacterial strains deposited in GenBank. Cyanobacterial cells and environmental DNA and RNA were collected from both the water column and sediment of a eutrophic stream (the Gong-ji Stream, Chuncheon, South Korea), which has a high 2-MIB concentration. Primer sets mibC196 and mibC300 showed universality to mibC in the Synechococcales and Oscillatoriales strains; the mibC132 primer showed high specificity for Pseudanabaena and Planktothricoides mibC.
    [Show full text]