Biofilm Degradation of Nontuberculous Mycobacteria

Total Page:16

File Type:pdf, Size:1020Kb

Biofilm Degradation of Nontuberculous Mycobacteria processes Article Biofilm Degradation of Nontuberculous Mycobacteria Formed on Stainless Steel Following Treatment with Immortelle (Helichrysum italicum) and Common Juniper (Juniperus communis) Essential Oils Dolores Peruˇc 1,* , Dalibor Brozni´c 2 , Željka Maglica 3, Zvonimir Marijanovi´c 4, Ljerka Karleuša 5 and Ivana Gobin 1 1 Department of Microbiology and Parasitology, Faculty of Medicine, University of Rijeka, 51000 Rijeka, Croatia; [email protected] 2 Department of Medical Chemistry, Biochemistry and Clinical Chemistry, Faculty of Medicine, University of Rijeka, 51000 Rijeka, Croatia; [email protected] 3 Department of Biotechnology, University of Rijeka, 51000 Rijeka, Croatia; [email protected] 4 Department of Food Technology and Biotechnology, Faculty of Chemistry and Technology, University of Split, 21000 Split, Croatia; [email protected] 5 Department of Physiology and Immunology, Faculty of Medicine, University of Rijeka, 51000 Rijeka, Croatia; [email protected] * Correspondence: [email protected]; Tel.: +385-(0)51-651-145; Fax: +385-(0)51-651-177 Abstract: Nontuberculous mycobacteria, like other opportunistic premise plumbing pathogens, pro- duce resistant biofilms on various surfaces in the plumbing system including pipes, tanks, and fittings. Citation: Peruˇc,D.; Brozni´c,D.; Since standard methods of water disinfection are ineffective in eradicating biofilms, research into new Maglica, Ž.; Marijanovi´c,Z.; Karleuša, agents is necessary. Essential oils (EOs) have great potential as anti-biofilm agents. Therefore, the pur- L.; Gobin, I. Biofilm Degradation of pose of this research was to investigate the potential anti-biofilm effect of common juniper (Juniperus Nontuberculous Mycobacteria communis) and immortelle (Helichrysum italicum) EOs. Minimum inhibitory concentrations (MIC), Formed on Stainless Steel Following Treatment with Immortelle minimum bactericidal concentrations (MBC), and minimum effective concentrations of EOs on My- (Helichrysum italicum) and Common cobacterium avium, M. intracellulare, and M. gordonae were tested. Additionally, biofilms on the surface Juniper (Juniperus communis) Essential of a stainless steel disc were treated with single or mixed concentration of EOs, in order to investigate Oils. Processes 2021, 9, 362. https:// their degeneration via the bacterial count and confocal laser scanning microscopy (CLSM). H. italicum doi.org/10.3390/pr9020362 EO showed the strongest biofilm degradation ability against all Mycobacteria strains that were tested. The strongest effect in the biofilm degradation after the single or mixed applications of EOs was Academic Editors: Nicola Gargiulo observed against M. gordonae, followed by M. avium. The most resistant was the M. intracellulare and Elwira Sieniawska biofilm. Synergistic combinations of J. communis and H. italicum EOs therefore seem to be an effective Received: 30 December 2020 substance in biofilm degradation for use in small water systems such as baths or hot tubs. Accepted: 10 February 2021 Published: 16 February 2021 Keywords: biofilm; common juniper; immortelle; nontuberculous mycobacteria; stainless steel Publisher’s Note: MDPI stays neutral with regard to jurisdictional claims in published maps and institutional affil- 1. Introduction iations. Mycobacteria originated 150 million years ago [1]. The genus Mycobacterium is the only member of the family Mycobacteriaceae from the order Actinomycetales and the class Actinomycetes. Today, more than 200 species belong to the genus Mycobacterium, which include obligate and opportunistic pathogens and saprophytes [2]. Nontuberculous my- Copyright: © 2021 by the authors. Licensee MDPI, Basel, Switzerland. cobacteria (NTM) are a heterogeneous group of environmental bacteria mainly isolated This article is an open access article from water, soil, dust, various animals, milk, and dairy products [3]. Although mostly ap- distributed under the terms and athogenic, nowadays, they increasingly represent important environmental opportunistic conditions of the Creative Commons pathogens [4]. Mycobacterium avium and M. intracellulare are members of the Mycobacterium Attribution (CC BY) license (https:// avium complex (MAC). These are slow-growing unpigmented mycobacteria that form creativecommons.org/licenses/by/ smooth, flat, transparent colonies. MACs are the most frequently isolated pathogenic NTM 4.0/). species from respiratory samples [5]. M. gordonae is a mycobacterium that forms smooth Processes 2021, 9, 362. https://doi.org/10.3390/pr9020362 https://www.mdpi.com/journal/processes Processes 2021, 9, 362 2 of 17 orange colonies and is a mostly apathogenic, saprophytic species of NTM [5,6]. In Croatia, it is one of the most common isolates from the respiratory tract, but is extremely rarely associated with clinically proven infection [7]. Inhalation of infectious aerosol is a major transmission route for pulmonary infections caused by NTM [8]. The source of infection can be drinking tap water, well water, taps in residential, hospital and laboratory areas, hot tub water, house dust, potted soil, forest soil, domestic animals, or sea water [8–10]. The presence of NTM in these sources is mainly a result of their ability to form biofilms and to survive in free-living amoebae [9]. Due to a high content of complex lipids and mycolates, the cell wall of mycobacteria is extremely hydrophobic, which greatly facilitates their binding to various surfaces and biofilm formation and contributes to their resistance to phagocytosis, disinfectants, and antimicrobial drugs [2]. The research revealed that tap wa- ter is often a source of NTM colonization and/or infection [11]. In the aquatic environment, M. avium has an exceptional ability to form biofilm [4]. As a result, this mycobacterium, along with Legionella pneumophila, Pseudomonas aeruginosa, and Acinetobacter baumannii, is classified as an opportunistic premise plumbing pathogen (OPPP) [12]. Twice as many Mycobacterium spp. were found in biofilm samples from showerheads than were found in drinking water samples. M. gordonae, M. avium, M. intracellulare, and M. xenopi were the species most frequently isolated from these biofilms, while drinking water contained significant amounts of M. gordonae, M. chelonae, M. fortuitum, and M. terrae [13,14]. Most studies comparing the formation of biofilms of slow-growing NTMs in the aquatic environment have identified three key determinants: First, NTMs can, indepen- dently, without the presence of other microorganisms, create a suitable substrate and begin biofilm formation. Second, plastic and siliconized substrates widely used in medicine and in the water supply system can be very quickly colonized with mycobacteria. Third, NTMs can produce biofilms under the conditions of low nutrient levels such as in the water supply system, without significantly impairing their growth potential [15]. The Mediterranean area is known as the natural habitat of a large number of medicinal plants that have long been utilized in traditional medicine. According to the available data, the Croatian flora consists of over 4000 species [16]. Research on the antimicrobial effect of certain plant species and natural substances, the effective concentration of which has no harmful effects on the human body, represents an important contribution to the improvement of therapeutic and preventive protocols. The biochemical and physiological properties of each plant species directly depend on its chemical composition. This primarily refers to the fact that each individual species inhabiting a particular geographical area will have a genome encoding specific enzyme system, which in turn produces a specific range of certain chemical compounds [17]. Essential oils (EO) are extracts characterized as a complex mixture of volatile constituents having a strong scent. They are formed by the secondary metabolism of plants [18]. There is substantial data in the literature on the antibacterial, antifungal, and antiviral effects of different EOs [19–21], but few studies have been made on the effects of EOs on mycobacteria [22,23]. Common juniper (Juniperus communis) is an evergreen coniferous shrub that grows in the hilly regions of the Northern Hemisphere. Its needles and dried fruit are used in traditional medicine as diuretic, uroantiseptic, carminative, digestive, and antioxidant agents [24]. The main bioactive substances in J. communis EO are: a- and b-pinene, b- myrcene, sabinene, limonene, terpinene-4-ol and b-caryophyllene [25–27]. Immortelle (Helichrysum italicum), a perennial flowering plant belonging to the genus Helichrysum, from the family Asteraceae, is widely distributed along the Adriatic coast and islands and is used in traditional medicine for its anti-inflammatory, antimicrobial, and antioxidant properties [28]. H. italicum EO, produced from the flowering plant, is most commonly reported to contain: a-pinene, neryl acetate, b-curcumene, g-curcumene, b-caryophyllene, limonene, a-cadrene, and geranyl acetate [17,29,30]. The first aim of this study was to determine the chemical compositions of J. communis and H. italicum EOs as well as to examine the antimicrobial effects of these EOs on M. avium, M. intracellulare, and M.gordonae and to determine their minimum inhibitory concentration Processes 2021, 9, 362 3 of 17 (MIC) and minimum bactericidal concentration (MBC). The second aim was to examine the interaction of J. communis and H. italicum EOs on selected NTMs and their effect on the degradation of mycobacterial biofilms
Recommended publications
  • Genomic Homogeneity Between Mycobacterium Avium Subsp. Avium and Mycobacterium Avium Subsp
    University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln U.S. Department of Agriculture: Agricultural Publications from USDA-ARS / UNL Faculty Research Service, Lincoln, Nebraska 2003 Genomic homogeneity between Mycobacterium avium subsp. avium and Mycobacterium avium subsp. paratuberculosis belies their divergent growth rates John P. Bannantine ARS-USDA, [email protected] Qing Zhang 2University of Minnesota, Minneapolis, [email protected] Ling-Ling Li University of Minnesota, Minneapolis, [email protected] Vivek Kapur University of Minnesota, Minneapolis, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/usdaarsfacpub Bannantine, John P.; Zhang, Qing; Li, Ling-Ling; and Kapur, Vivek, "Genomic homogeneity between Mycobacterium avium subsp. avium and Mycobacterium avium subsp. paratuberculosis belies their divergent growth rates" (2003). Publications from USDA-ARS / UNL Faculty. 2372. https://digitalcommons.unl.edu/usdaarsfacpub/2372 This Article is brought to you for free and open access by the U.S. Department of Agriculture: Agricultural Research Service, Lincoln, Nebraska at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Publications from USDA-ARS / UNL Faculty by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. BMC Microbiology BioMed Central Research article Open Access Genomic homogeneity between Mycobacterium avium subsp. avium and Mycobacterium avium subsp. paratuberculosis belies their
    [Show full text]
  • Nomenclature of Bacteria with Special Reference to the Order Actinomycetales'
    INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY VOL. 21, No. 2 April 1971, pp. 197-206 Printed in U.S.A. Copyright 0 1971 International Association of Microbiological Societies Nomenclature of Bacteria with Special Reference to the Order Actinomycetales' THOMAS G. PRIDHAM Northern Regional Research Laboratory,z Peoria, Illinois 61604 The number of names for streptomycetes that is in the scientific literature now is exceeded only by those for organisms placed in the genus Bacillus Cohn 1872. The genus Streptomyces Waksman and Henrici 1943 may well rank in first place if names in the patent and quasiscientific literature are included. The overwhelming number of names and the lack of a precise definition of a particular species or subspecies, of type or neotype strains, and of certain essential details have brought about problems in assessing the status of many names. The major problems encountered in a 2-year study are discussed, and a simple format is suggested, use of which may help to clarify future nomenclature. Twelve years ago, I presented (29) before ture of Bacteria (20); type strains, where these the First Latin-American Congress for Micro- can be located and obtained, are being as- biology held at Mexico, D.F., some suggestions sembled and recharacterized (35 -38) through on establishing a logical order in streptomycete the International Streptomyces Project, and a classification. minumum set of substrata and tests have been (i) Compilation and evaluation of available recommended for description of A ctino- literature on nomenclature and characterization mycetales in patents (1 1, 12). of streptomycetes. One item upon which insufficient attention (ii) Decision on the proper code of nomen- has been focused is nomenclature.
    [Show full text]
  • Glycomyces, a New Genus of the Actinomycetales D
    INTERNATIONALJOURNAL OF SYSTEMATICBACTERIOLOGY, Oct. 1985, p. 417-421 Vol. 35, No. 4 0020-7713/85/040417-05$02.00/0 Glycomyces, a New Genus of the Actinomycetales D. P. LABEDA,l* R. T. TESTA,2 M. P. LECHEVALIER,3 AND H. A. LECHEVALIER3 U. S. Department of Agriculture, Agricultural Research Sewice, Northern Regional Research Center, Peoria, Illinois 61604'; Medical Research Division, American Cyanamid Co., Pearl River, New York 109652; and Waksman Institute of Microbiology, Rutgers, The State University, Piscataway, New Jersey 088543 We describe two species of the new genus Glycomyces, Glycomyces harbinensis sp. nov. and Glycomyces rutgersensis sp. nov. Members of this genus are aerobic, produce nonfragmenting vegetative hyphae, and form chains of conidia on aerial sporophores. The cell walls are type I1 (rneso-diaminopimelic acid and glycine are present), and the whole-cell sugar patterns are type D (xylose and arabinose are present). The phospholipid pattern of both species is type P-I (no nitrogenous phospholipids). The guanine-plus-cytosine content of the deoxyribonucleic acid ranges from 71 to 73 mol%. The type strain of type species G. harbinensis is strain NRRL 15337 (= LL-D05139), and the type strain of G. rutgersensis is strain NRRL B-16106 (= LL-1-20). During the course of isolation of actinomycete strains Gordon et al. (8). Esculin hydrolysis was evaluated by the from soil for an antibiotic screening program, a novel isolate method of Williams et al. (27), and Tween 80 hydrolysis was was obtained from a soil sample from Harbin, People's evaluated by the method of Sierra (26). Phosphatase activity Republic of China.
    [Show full text]
  • Human Microbiota Network: Unveiling Potential Crosstalk Between the Different Microbiota Ecosystems and Their Role in Health and Disease
    nutrients Review Human Microbiota Network: Unveiling Potential Crosstalk between the Different Microbiota Ecosystems and Their Role in Health and Disease Jose E. Martínez †, Augusto Vargas † , Tania Pérez-Sánchez , Ignacio J. Encío , Miriam Cabello-Olmo * and Miguel Barajas * Biochemistry Area, Department of Health Science, Public University of Navarre, 31008 Pamplona, Spain; [email protected] (J.E.M.); [email protected] (A.V.); [email protected] (T.P.-S.); [email protected] (I.J.E.) * Correspondence: [email protected] (M.C.-O.); [email protected] (M.B.) † These authors contributed equally to this work. Abstract: The human body is host to a large number of microorganisms which conform the human microbiota, that is known to play an important role in health and disease. Although most of the microorganisms that coexist with us are located in the gut, microbial cells present in other locations (like skin, respiratory tract, genitourinary tract, and the vaginal zone in women) also play a significant role regulating host health. The fact that there are different kinds of microbiota in different body areas does not mean they are independent. It is plausible that connection exist, and different studies have shown that the microbiota present in different zones of the human body has the capability of communicating through secondary metabolites. In this sense, dysbiosis in one body compartment Citation: Martínez, J.E.; Vargas, A.; may negatively affect distal areas and contribute to the development of diseases. Accordingly, it Pérez-Sánchez, T.; Encío, I.J.; could be hypothesized that the whole set of microbial cells that inhabit the human body form a Cabello-Olmo, M.; Barajas, M.
    [Show full text]
  • Composition of the Adult Digestive Tract Bacterial Microbiome Based On
    Segata et al. Genome Biology 2012, 13:R42 http://genomebiology.com/2012/13/6/R42 RESEARCH Open Access Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples Nicola Segata1, Susan Kinder Haake2,3†, Peter Mannon4†, Katherine P Lemon5,6†, Levi Waldron1, Dirk Gevers7, Curtis Huttenhower1 and Jacques Izard5,8* Abstract Background: To understand the relationship between our bacterial microbiome and health, it is essential to define the microbiome in the absence of disease. The digestive tract includes diverse habitats and hosts the human body’s greatest bacterial density. We describe the bacterial community composition of ten digestive tract sites from more than 200 normal adults enrolled in the Human Microbiome Project, and metagenomically determined metabolic potentials of four representative sites. Results: The microbiota of these diverse habitats formed four groups based on similar community compositions: buccal mucosa, keratinized gingiva, hard palate; saliva, tongue, tonsils, throat; sub- and supra-gingival plaques; and stool. Phyla initially identified from environmental samples were detected throughout this population, primarily TM7, SR1, and Synergistetes. Genera with pathogenic members were well-represented among this disease-free cohort. Tooth-associated communities were distinct, but not entirely dissimilar, from other oral surfaces. The Porphyromonadaceae, Veillonellaceae and Lachnospiraceae families were common to all sites, but the distributions of their genera varied significantly. Most metabolic processes were distributed widely throughout the digestive tract microbiota, with variations in metagenomic abundance between body habitats. These included shifts in sugar transporter types between the supragingival plaque, other oral surfaces, and stool; hydrogen and hydrogen sulfide production were also differentially distributed.
    [Show full text]
  • Comparative Analyses of Whole-Genome Protein Sequences
    www.nature.com/scientificreports OPEN Comparative analyses of whole- genome protein sequences from multiple organisms Received: 7 June 2017 Makio Yokono 1,2, Soichirou Satoh3 & Ayumi Tanaka1 Accepted: 16 April 2018 Phylogenies based on entire genomes are a powerful tool for reconstructing the Tree of Life. Several Published: xx xx xxxx methods have been proposed, most of which employ an alignment-free strategy. Average sequence similarity methods are diferent than most other whole-genome methods, because they are based on local alignments. However, previous average similarity methods fail to reconstruct a correct phylogeny when compared against other whole-genome trees. In this study, we developed a novel average sequence similarity method. Our method correctly reconstructs the phylogenetic tree of in silico evolved E. coli proteomes. We applied the method to reconstruct a whole-proteome phylogeny of 1,087 species from all three domains of life, Bacteria, Archaea, and Eucarya. Our tree was automatically reconstructed without any human decisions, such as the selection of organisms. The tree exhibits a concentric circle-like structure, indicating that all the organisms have similar total branch lengths from their common ancestor. Branching patterns of the members of each phylum of Bacteria and Archaea are largely consistent with previous reports. The topologies are largely consistent with those reconstructed by other methods. These results strongly suggest that this approach has sufcient taxonomic resolution and reliability to infer phylogeny, from phylum to strain, of a wide range of organisms. Te reconstruction of phylogenetic trees is a powerful tool for understanding organismal evolutionary processes. Molecular phylogenetic analysis using ribosomal RNA (rRNA) clarifed the phylogenetic relationship of the three domains, bacterial, archaeal, and eukaryotic1.
    [Show full text]
  • Type of the Paper (Article
    Supplementary Materials S1 Clinical details recorded, Sampling, DNA Extraction of Microbial DNA, 16S rRNA gene sequencing, Bioinformatic pipeline, Quantitative Polymerase Chain Reaction Clinical details recorded In addition to the microbial specimen, the following clinical features were also recorded for each patient: age, gender, infection type (primary or secondary, meaning initial or revision treatment), pain, tenderness to percussion, sinus tract and size of the periapical radiolucency, to determine the correlation between these features and microbial findings (Table 1). Prevalence of all clinical signs and symptoms (except periapical lesion size) were recorded on a binary scale [0 = absent, 1 = present], while the size of the radiolucency was measured in millimetres by two endodontic specialists on two- dimensional periapical radiographs (Planmeca Romexis, Coventry, UK). Sampling After anaesthesia, the tooth to be treated was isolated with a rubber dam (UnoDent, Essex, UK), and field decontamination was carried out before and after access opening, according to an established protocol, and shown to eliminate contaminating DNA (Data not shown). An access cavity was cut with a sterile bur under sterile saline irrigation (0.9% NaCl, Mölnlycke Health Care, Göteborg, Sweden), with contamination control samples taken. Root canal patency was assessed with a sterile K-file (Dentsply-Sirona, Ballaigues, Switzerland). For non-culture-based analysis, clinical samples were collected by inserting two paper points size 15 (Dentsply Sirona, USA) into the root canal. Each paper point was retained in the canal for 1 min with careful agitation, then was transferred to −80ºC storage immediately before further analysis. Cases of secondary endodontic treatment were sampled using the same protocol, with the exception that specimens were collected after removal of the coronal gutta-percha with Gates Glidden drills (Dentsply-Sirona, Switzerland).
    [Show full text]
  • Workshop on Mycobacterium Avium Subsp
    Workshop on Mycobacterium avium subsp. paratuberculosis in North American Bison (Bison bison) PROCEEDINGS AND WORKSHOP REPORT Alberta Cooperative Conservation Research Unit National (Canadian) Wood Bison (ACCRU) Recovery Team Editors: Murray Woodbury, Elena Garde, Helen Schwantje, John Nishi, and Brett Elkin with contributions from Michelle Oakley, Jenny Powers, Jennifer Sibley and workshop participants. Department of Resources, Wildlife and Economic Development Government of the Northwest Territories Yellowknife, NT 2006 Manuscript Report No. 170 The contents of this paper are the sole responsibility of the author ii iii ABSTRACT Many of the emerging diseases worldwide are shared between domestic livestock, free ranging wildlife, and humans. Infection by mycobacterial organisms is not a recent or newly emerging issue, but the increasing frequency of disease caused by Mycobacterium species, where wildlife, domestic livestock, and humans are epidemiologically linked is cause for concern for wildlife management, agricultural and public health agencies alike. Human tuberculosis, including that caused by Mycobacterium bovis, once thought to be a well understood disease of lifestyle and socioeconomic consequences is once again a global concern. Johne’s disease (Mycobacterium avium subspecies paratuberculosis infection), previously considered a production limiting disease important only in domestic ruminants, has recently been implicated in the pathogenesis of Crohn’s disease in humans. Furthermore, wildlife and livestock reservoirs of infection
    [Show full text]
  • Microbial Diversity of Thermophiles with Biomass Deconstruction Potential in a Foliage-­Rich Hot Spring
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Universiti Teknologi Malaysia Institutional Repository Received: 9 December 2017 | Revised: 29 January 2018 | Accepted: 12 February 2018 DOI: 10.1002/mbo3.615 ORIGINAL RESEARCH Microbial diversity of thermophiles with biomass deconstruction potential in a foliage- rich hot spring Li Sin Lee1 | Kian Mau Goh2 | Chia Sing Chan2 | Geok Yuan Annie Tan1 | Wai-Fong Yin1 | Chun Shiong Chong2 | Kok-Gan Chan1,3 1ISB (Genetics), Faculty of Science, University of Malaysia, Kuala Abstract Lumpur, Malaysia The ability of thermophilic microorganisms and their enzymes to decompose biomass 2 Faculty of Biosciences and Medical have attracted attention due to their quick reaction time, thermostability, and de- Engineering, Universiti Teknologi Malaysia, Skudai, Johor, Malaysia creased risk of contamination. Exploitation of efficient thermostable glycoside hy- 3Jiangsu University, Zhenjiang, China drolases (GHs) could accelerate the industrialization of biofuels and biochemicals. However, the full spectrum of thermophiles and their enzymes that are important for Correspondence Kok-Gan Chan, International Genome biomass degradation at high temperatures have not yet been thoroughly studied. We Centre, Jiangsu University, Zhenjiang, China. examined a Malaysian Y- shaped Sungai Klah hot spring located within a wooded area. Email: [email protected] The fallen foliage that formed a thick layer of biomass bed under the heated water of Funding information the Y- shaped Sungai Klah hot spring was an ideal environment for the discovery and Postgraduate Research Fund grant, Grant/ Award Number: PG124-2016A; University analysis of microbial biomass decay communities. We sequenced the hypervariable of Malaya, Grant/Award Number: GA001- regions of bacterial and archaeal 16S rRNA genes using total community DNA ex- 2016 and GA002-2016; Universiti Teknologi Malaysia GUP, Grant/Award Number: tracted from the hot spring.
    [Show full text]
  • Diversity of the Human Gastrointestinal Microbiota Novel Perspectives from High Throughput Analyses
    Diversity of the Human Gastrointestinal Microbiota Novel Perspectives from High Throughput Analyses Mirjana Rajilić-Stojanović Promotor Prof. Dr W. M. de Vos Hoogleraar Microbiologie Wageningen Universiteit Samenstelling Promotiecommissie Prof. Dr T. Abee Wageningen Universiteit Dr J. Doré INRA, France Prof. Dr G. R. Gibson University of Reading, UK Prof. Dr S. Salminen University of Turku, Finland Dr K. Venema TNO Quality for life, Zeist Dit onderzoek is uitgevoerd binnen de onderzoekschool VLAG. Diversity of the Human Gastrointestinal Microbiota Novel Perspectives from High Throughput Analyses Mirjana Rajilić-Stojanović Proefschrift Ter verkrijging van de graad van doctor op gezag van de rector magnificus van Wageningen Universiteit, Prof. dr. M. J. Kropff, in het openbaar te verdedigen op maandag 11 juni 2007 des namiddags te vier uur in de Aula Mirjana Rajilić-Stojanović, Diversity of the Human Gastrointestinal Microbiota – Novel Perspectives from High Throughput Analyses (2007) PhD Thesis, Wageningen University and Research Centre, Wageningen, The Netherlands – with Summary in Dutch – 214 p. ISBN: 978-90-8504-663-9 Abstract The human gastrointestinal tract is densely populated by hundreds of microbial (primarily bacterial, but also archaeal and fungal) species that are collectively named the microbiota. This microbiota performs various functions and contributes significantly to the digestion and the health of the host. It has previously been noted that the diversity of the gastrointestinal microbiota is disturbed in relation to several intestinal and not intestine related diseases. However, accurate and detailed defining of such disturbances is hampered by the fact that the diversity of this ecosystem is still not fully described, primarily because of its extreme complexity, and high inter-individual variability.
    [Show full text]
  • Mycobacteriosis in Australian Birds Dec 2013
    Mycobacteriosis in Australian birds Fact sheet Introductory statement Multiple species of mycobacteria can cause disease in birds. The most common species, however, are Mycobacterium avium subspecies avium and M. genavense. Mycobacteria cause a slowly progressive and, in the end, fatal disease in the birds they infect. Infection in wild birds occurs sporadically. However, in certain species of captive birds and in certain collections of captive birds, infection prevalence is high. A lack of genetic diversity, insufficient hygiene, and an increased persistence of these bacteria in the environment are likely to be predisposing conditions to infection in captive birds. Although essentially eradicated with the onset of intensive raising processes in the chicken industry, the return to free-range farming of chickens may result in a re-emergence of mycobacterial infections. The role of captive birds in spill over to native Australian wild birds is not known. Aetiology Order (Actinomycetales), family (Mycobacteriaceae), genus (Mycobacterium). Mycobacteria are small rod-shaped bacteria that grow inside of the host’s cells. They do not stain with the Gram’s stain or do so faintly. They are difficult to see in haematoxyln and eosin stained tissue sections and only stain with the acid fast or Ziehl-Neelsen stain. They stain red with this stain and are referred to as acid- fast organisms (reviewed in Saggese et al. 2010). The two most common species of mycobacteria detected in diseased birds are Mycobacterium avium subspecies avium (MAA) and M. genavense (MG) and they are the focus of this fact sheet (Hoop et al. 1993; Feizabad et al. 1996; Saggese et al.
    [Show full text]
  • Bacterial Pseudomycoses of the Skin: a Case Report
    Bacterial Pseudomycoses of the Skin: A Case Report Robert Lin, DO,* Alpesh Desai, DO, FAOCD** *2nd-year resident, South Texas Osteopathic Dermatology Residency Program, Houston, TX **Program Director, South Texas Osteopathic Dermatology Residency Program, Houston, TX Abstract Clinicians in all scopes of medicine are no strangers to misnomers. The inaccurate naming of diseases and organisms oftentimes results from their resemblance to other entities and has been known to mislead physicians regarding etiologies and histopathologies. In the field of dermatology, certain skin infections have been mislabeled to be fungal when they are actually bacterial in nature. In order to further understand the origins and development of these infectious misnomers, we present a patient diagnosed with an unusual condition involving three different pseudomycotic skin infections. We also discuss the clinical features shared between these three bacterial pseudomycoses and identify the features that differentiate them from one another histopathologically. Introduction Histologic findings of these specimens were the diagnosis of actinomycetoma, actinomycosis, Pseudomycotic infections of the skin are a subset consistent with the diagnoses of botryomycosis, and botryomycosis, all are infections of the of bacterial infections that produces lesions with actinomycosis, and actinomycetoma pending the skin caused by specific types of bacteria. These clinically fungal features.1 Often, additional results of the tissue culture. conditions are differentiated from one
    [Show full text]