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Local Population Differentiation and Phylogenetic
Japanese Journal of Herpetology 17(3): 91-97., June 1998 (C)1998 by The HerpetologicalSociety of Japan Local Population Differentiation and Phylogenetic Relationships of Russian Brown Frog, Rana amurensis Inferred by Mitochon- drial Cytochrome b Gene Sequences (Amphibia, Ranidae) TOMOKO TANAKA-UENO, MASAFUMI MATSUI, TAKANORI SATO, SEN TAKENAKA AND OSAMU TAKENAKA Abstract: In order to assess local population differentiation and phylogenetic relation- ships of a Russian brown frog, Rana amurensis, the sequences of 587 base pairs of the mitochondrial cytochrome b genes are compared with seven species of Japanese and one species complex of Taiwanese brown frogs (R. pirica, R. ornativentris, R. dybowskii, R. japonica, R. okinavana, R. tagoi, R. tsushimensis, and the R. sauteri complex). Genetic differentiation between populations of R. amurensis from Sakhalin and the Maritime Territory was found to be minimal. The resultant phylogenetic tree indicates monophyly of brown frogs and earliest divergence of R. amurensis among all the brown frogs studied. For this reason, separation of R. amurensis from the R. japonica group is suggested, but separation of the R. sauteri complex as a distinct ge- nus or subgenus Pseudorana is not supported. Key words: Brown frog; Cytochrome b; Phylogeny; Pseudorana; Rana amurensis; Russia Rana amurensis Boulenger, 1886 occupies a ships of Japanese brown frogs have been report- very wide range, including western Siberia east ed by Nishioka et al. (1992) and Tanaka et al. to Sakhalin, northern and eastern Mongolia, (1996). In the present study, we first investigat- northeastern China and Korea, and regions ed the degree of genetic differentiation between north to bevond the Arctic Circle to 71°N populations of R, amurensis in Sakhalin and (Frost, 1985). -
Phylogenetic Relationships of Brown Frogs from Taiwan and Japan Assessed by Mitochondrial Cytochrome B Gene Sequences (Rana: Ranidae)
ZOOLOGICAL SCIENCE 15: 283–288 (1998) © 1998 Zoological Society of Japan Phylogenetic Relationships of Brown Frogs from Taiwan and Japan Assessed by Mitochondrial Cytochrome b Gene Sequences (Rana: Ranidae) Tomoko Tanaka-Ueno1*, Masafumi Matsui1, Szu-Lung Chen2, Osamu Takenaka3 and Hidetoshi Ota4 1Graduate School of Human and Environmental Studies, Kyoto University, Sakyo-ku, Kyoto 606-01, Japan 2Department of Zoology, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-01, Japan 3Primate Research Institute, Kyoto University, Inuyama, Aichi 484, Japan 4Tropical Biosphere Research Center, University of the Ryukyus, Nishihara, Okinawa 903-01, Japan ABSTRACT—In order to assess phylogenetic relationships of Taiwanese brown frogs (Rana longicrus and the R. sauteri complex), the partial sequences (587 base pairs) of the mitochondrial cytochrome b genes were compared with six brown frogs from Japan (R. pirica, R. ornativentris, R. japonica, R. tagoi tagoi, R. tsushimensis, and R. okinavana). Resultant phylogenetic trees indicated a considerable genetic differentia- tion between R. longicrus and R. japonica in spite of their close morphological and ecological similarities. The R. sauteri complex includes two genetically distinct groups that are not consistent with current classifica- tion. One group including populations of Alishan (central Taiwan) and Sanyi (western Taiwan) seemed to be closest to R. tagoi and the presumptive common ancestor of these frogs is thought to have diverged very early. Another group including a population from Wulai (northern Taiwan) showed a sister relationship with R. tsushimensis and R. okinavana, both isolated on small islands of Japan. These Taiwanese and Japanese brown frogs as a whole form a monophyletic group, and separation of the R. -
Zootaxa,Paraphyly of Chinese Amolops (Anura, Ranidae) and Phylogenetic Position of The
Zootaxa 1531: 49–55 (2007) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2007 · Magnolia Press ISSN 1175-5334 (online edition) Paraphyly of Chinese Amolops (Anura, Ranidae) and phylogenetic position of the rare Chinese frog, Amolops tormotus HONG-XIA CAI1, 2, JING CHE2, JUN-FENG PANG2, ER-MI ZHAO1,4& YA-PING ZHANG2, 3,4 1Key Laboratory of Bio-resources and Eco-environment (Ministry of Education), College of Life Sciences, Sichuan University, Chengdu, China, 610064 2Laboratory of Cellular and Molecular Evolution, Kunming Institute of Zoology, the Chinese Academy of Sciences, Kunming, China, 650223 3Laboratory for Conservation and Utilization of Bio-resources, Yunnan University, Kunming, China, 650091 4Corresponding authors. E-mail: [email protected]; [email protected] Abstract In order to evaluate the five species groups of Chinese Amolops based on morphological characteristics, and to clarify the phylogenetic position of the concave-eared torrent frog Amolops tormotus, we investigated the phylogeny of Amolops by maximum parsimony, Bayesian Inference, and maximum likelihood methods using two mitochondrial DNA fragments (12S rRNA, 16S rRNA). Our results supported a sister group relationship of Amolops ricketti and Amolops hainanensis. However, the grouping of Amolops mantzorum and Amolops monticola needs to be resolved with more data. Amolops tormotus was nested in genus Odorrana. Thus, recognition of the A. tormotus group is unwarranted and A. tormotus should be referred to genus Odorrana as O. tormota. This species is the sister group of O. nasica plus O. versabilis. The new classification implies that the genus Wurana is to be considered as junior subjective synonym of Odorrana. -
Title Phylogenetic Relationships of the Chinese Brown Frogs (Genus Rana)
Phylogenetic Relationships of the Chinese Brown Frogs Title (Genus Rana) Inferred from Partial Mitochondrial 12S and 16S rRNA Gene Sequences� Che, Jing; Pang, Junfeng; Zhao, Er-mi; Matsui, Masafumi; Author(s) Zhang, Ya-ping Citation Zoological Science (2007), 24(1): 71-80 Issue Date 2007-01 URL http://hdl.handle.net/2433/85329 Right (c) 日本動物学会 / Zoological Society of Japan Type Journal Article Textversion publisher Kyoto University ZOOLOGICAL SCIENCE 24:71–80 (2007) © 2007 Zoological Society of Japan Phylogenetic Relationships of the Chinese Brown Frogs (Genus Rana) Inferred from Partial Mitochondrial 12S and 16S rRNA Gene Sequences Jing Che1,2, Junfeng Pang2, Er-mi Zhao1, Masafumi Matsui3 and Ya-ping Zhang2* 1College of Life Sciences, Sichuan University, Chengdu 610064, China 2Laboratory of Cellular and Molecular Evolution, Kunming Institute of Zoology, The Chinese Academy of Sciences, Kunming 650223, China 3Graduate School of Human and Environmental Studies, Kyoto University, Sakyo, Kyoto 606-8501, Japan Based on partial sequences of the 12S and 16S ribosomal RNA genes, we estimated phylogenetic relationships among brown frogs of the Rana temporaria group from China. From the phylogenetic trees obtained, we propose to include Rana zhengi in the brown frogs. Monophyly of the brown frogs was not unambiguously supported, but four well-supported clades (A, B, C, and D) always emerged, although relationships among them remained unresolved. Clade A contained brown frogs with 24 chromosomes and was split into two distinct subclades (Subclade A-1: R. chensinensis and R. huanrenensis; Subclade A-2: R. dybowskii). Polytomous relationships among populations of R. chensinensis and R. huanrenensis suggested the necessity of further taxonomic assessment. -
Geographical Variations of Rana Seuterl (Anura: Ranidae) in Taiwan
Zoological Studies 36(3): 201-221 (1997) Geographical Variations of Rana seuterl (Anura: Ranidae) in Taiwan 2 Wen-Hao ChOU 1,2, * and Jun-Yi Lin IZoology Division, National Museum of Natural Science, Taichung, Taiwan 404, R.O.C. Tel: 886-4-3226940 ext. 506 Fax: 886-4-3230787 E-mail: [email protected] 2Department of Biology, Tunghai University, Taichung, Taiwan 407, R.O.C. (Accepted April 14, 1997) Wen-Hao Chou and Jun-Yi Lin (1997) Geographical variations of Rana sauteri (Anura: Ranidae) in Taiwan. Zoological Studies 36(3): 201-221. Rana sauteri is widely distributed in hills and mountains of Taiwan from 100 to 3000 m in elevation, a range including SUbtropical to cool temperate climatic zones. Both the gastro myzophorous tadpoles and adults have distinct geographical variations in morphology. Clinal variation in the shape of the upper jaw sheath and the number of labial tooth rows occurs from the foothills of western Taiwan eastward through the Central Mountain Range to the eastern slopes of the Central Mountain Range. This geographical pattern is supported and validated by multivariate analyses of adult morphology. Ac cording to the dispersal hypothesis, this geographical pattern may suggest that the dispersal center (= initial range of the ancestral group) was located in the western foothills, and it may indicate that the population expanded radially through the clinally variable transition zone to areas adjacent to the ridge of the Central Mountain Range (= range of the derived group). However, the establishment of the geographical pattern of R. sauteri seems to be better explained by the vicariance hypothesis which supports the occurrence of isolation-based dichotomous divergence within this grossly defined taxon. -
Elevational Variation in Reproductive and Life History Traits of Sauter's
Zoological Studies 42(1): 193-202 (2003) Elevational Variation in Reproductive and Life History Traits of Sauter’s Frog Rana sauteri Boulenger, 1909 in Taiwan Su-Ju Lai1,2, Yeong-Choy Kam3 and Yao-Sung Lin1,* 1Department of Zoology, National Taiwan University, Taipei, Taiwan 106, R.O.C. 2Zoology Division, Taiwan Endemic Species Research Institute, Chichi, Nantou, Taiwan 552, R.O.C. 3Department of Biology, National Changhua University of Education, Changhua, Taiwan 500, R.O.C. (Accepted October 23, 2002) Su-Ju Lai, Yeong-Choy Kam and Yao-Sung Lin (2003) Elevational variation in reproductive and life history traits of Sauter’s frog Rana sauteri Boulenger, 1909 in Taiwan. Zoological Studies 42(1): 193-202. Sauter’s frog, Rana sauteri Boulenger, 1909 in the west-central part of the Central Mountain Range of Taiwan at eleva- tions of 300 to 2360 m showed obvious elevational clines in reproductive and life cycle traits. With an increase in elevation, the breeding season and the periods of calling, aggregation, and egg deposition of mature frogs shifted from fall and winter (Oct. to Dec.) to spring (May), while the breeding period decreased but the larval period increased. Also, adult females at high elevations were larger and produced smaller clutch sizes but larg- er eggs and tadpoles. The temperature experiment showed that low temperatures in winter at high elevations and high temperatures in summer at low elevations are the primary environmental factors that define the breed- ing success of the species. Rana sauteri has experienced long-term selection by environmental factors (e.g., temperature), resulting in populations at high elevations breeding in spring and populations at low elevations breeding in fall and winter to ensure that their tadpoles can grow and complete metamorphosis. -
Di Hutan Harapan, Jambi the Anuran Species (Amphibia)
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Jurnal Biologi UNAND Jurnal Biologi Universitas Andalas (J. Bio. UA.) 1(2) – Desember 2012 : 99-107 Jenis-Jenis Anura (Amphibia) Di Hutan Harapan, Jambi The Anuran species (Amphibia) at Harapan Rainforest, Jambi Irvan Fadli Wanda1), Wilson Novarino2) dan Djong Hon Tjong3)*) 1)Laboratorium Riset Taksonomi Hewan, Jurusan Biologi, Fakultas Matematika dan Ilmu Pengetahuan Alam, Universitas Andalas, Padang, 25163 2)Museum Zoologi, Jurusan Biologi, Fakultas Matematika dan Ilmu Pengetahuan Alam, Universitas Andalas, Padang, 25163 3)Laboratorium Riset Genetika,. Jurusan Biologi, Fakultas Matematika dan Ilmu Pengetahuan Alam, Universitas Andalas, Padang, 25163 *)Koresponden: [email protected] Abstract An inventarisation of the Anuran species (Amphibia) at Harapan Rainforest, Jambi has been done from October 2011 to July 2012. We collected 127 samples from the field and made identification based on morphological characteristics. We identified 19 sepcies in which belong to five families i.e. Bufonidae (Phrynoidis asper Gravenhorst., Ingerophrynus parvus Boulenger., I. divergens Peters. and Pelophryne signata Boulenger.), Microhylidae (Kalophrynus pleurostigma Tschudi.), Dicroglossidae (Occidozyga sumatrana Peters., Fejervarya cancrivora Gravenhorst., F. limnocharis Boie., Limnonectes paramacrodon Boulenger., L. malesianus Kiew.), Ranidae (Hylarana erythraea Schlegel., H. parvaccola Peters., H. glandulosa Boulenger., H. nicobariensis Stolizka., -
Red List of Bangladesh 2015
Red List of Bangladesh Volume 1: Summary Chief National Technical Expert Mohammad Ali Reza Khan Technical Coordinator Mohammad Shahad Mahabub Chowdhury IUCN, International Union for Conservation of Nature Bangladesh Country Office 2015 i The designation of geographical entitles in this book and the presentation of the material, do not imply the expression of any opinion whatsoever on the part of IUCN, International Union for Conservation of Nature concerning the legal status of any country, territory, administration, or concerning the delimitation of its frontiers or boundaries. The biodiversity database and views expressed in this publication are not necessarily reflect those of IUCN, Bangladesh Forest Department and The World Bank. This publication has been made possible because of the funding received from The World Bank through Bangladesh Forest Department to implement the subproject entitled ‘Updating Species Red List of Bangladesh’ under the ‘Strengthening Regional Cooperation for Wildlife Protection (SRCWP)’ Project. Published by: IUCN Bangladesh Country Office Copyright: © 2015 Bangladesh Forest Department and IUCN, International Union for Conservation of Nature and Natural Resources Reproduction of this publication for educational or other non-commercial purposes is authorized without prior written permission from the copyright holders, provided the source is fully acknowledged. Reproduction of this publication for resale or other commercial purposes is prohibited without prior written permission of the copyright holders. Citation: Of this volume IUCN Bangladesh. 2015. Red List of Bangladesh Volume 1: Summary. IUCN, International Union for Conservation of Nature, Bangladesh Country Office, Dhaka, Bangladesh, pp. xvi+122. ISBN: 978-984-34-0733-7 Publication Assistant: Sheikh Asaduzzaman Design and Printed by: Progressive Printers Pvt. -
(Amphibia: Ranidae) on Sumatra, Indonesia
Phylogenetic systematics, diversity, and biogeography of the frogs with gastromyzophorous tadpoles (Amphibia: Ranidae) on Sumatra, Indonesia Dissertation zur Erlangung des Doktorgrades Fachbereich Biologie An der Fakultät für Mathematik, Informatik und Naturwissenschaften der Universität Hamburg Vorgelegt von Umilaela Arifin Hamburg, 2018 Tag der Disputation: 25 January 2019 Folgende Gutachter empfehlen die Annahme der Dissertation: 1. Prof. Dr. Alexander Haas 2. Prof. Dr. Bernhard Hausdorf “To reach the same destination, some people might only need one step but some other people might need two, three, a hundred, or a thousand steps. Never give up! Some are successful because they work harder than other people, not because they are smart.” –dti- Preface Preface It is such a relief to have finally finished writing this dissertation entitled “Phylogenetic systematics, diversity, and biogeography of the frogs with gastromyzophorous tadpoles (Amphibia: Ranidae) on Sumatra, Indonesia”. Thank to Allah, who has always embraced me in any situation, especially during my doctoral studies. The work I have done over the past five years is dedicated not only to myself, but also to all the people, who came into my life for various reasons. Also, this thesis is my small contribution to Indonesia (the “Ibu Pertiwi”) and its fascinating biodiversity. I hope to continue actively contributing to the field of herpetology in the future, simply because it is my greatest passion! During my childhood, especially through my high school years, it never crossed my mind that I would end up becoming a scientist. Coming from an ordinary Indonesian family and living in a small town made my parents worry about the education their children would need, in order to have a better life in the future. -
Larval Systematics of the Peninsular Malaysian Ranidae (Amphibia: Anura)
LARVAL SYSTEMATICS OF THE PENINSULAR MALAYSIAN RANIDAE (AMPHIBIA: ANURA) LEONG TZI MING NATIONAL UNIVERSITY OF SINGAPORE 2005 LARVAL SYSTEMATICS OF THE PENINSULAR MALAYSIAN RANIDAE (AMPHIBIA: ANURA) LEONG TZI MING B.Sc. (Hons.) A THESIS SUBMITTED FOR THE DEGREE OF DOCTOR OF PHILOSOPHY DEPARTMENT OF BIOLOGICAL SCIENCES THE NATIONAL UNIVERSITY OF SINGAPORE 2005 This is dedicated to my dad, mum and brothers. i ACKNOWLEDGEMENTS I am grateful to the many individuals and teams from various institutions who have contributed to the completion of this thesis in various avenues, of which encouragement was the most appreciated. They are, not in any order of preference, from the National University of Singapore (NUS): A/P Peter Ng, Tan Heok Hui, Kelvin K. P. Lim, Darren C. J. Yeo, Tan Swee Hee, Daisy Wowor, Lim Cheng Puay, Malcolm Soh, Greasi Simon, C. M. Yang, H. K. Lua, Wang Luan Keng, C. F. Lim, Yong Ann Nee; from the National Parks Board (Singapore): Lena Chan, Sharon Chan; from the Nature Society (Singapore): Subaraj Rajathurai, Andrew Tay, Vilma D’Rozario, Celine Low, David Teo, Rachel Teo, Sutari Supari, Leong Kwok Peng, Nick Baker, Tony O’Dempsey, Linda Chan; from the Wildlife Department (Malaysia): Lim Boo Liat, Sahir bin Othman; from the Forest Research Institute of Malaysia (FRIM): Norsham Yaakob, Terry Ong, Gary Lim; from WWF (Malaysia): Jeet Sukumaran; from the Economic Planning Unit, Malaysia (EPU): Puan Munirah; from the University of Sarawak (UNIMAS): Indraneil Das; from the National Science Museum, Thailand: Jairujin Nabhitabhata, Tanya Chan-ard, Yodchaiy Chuaynkern; from the University of Kyoto: Masafumi Matsui; from the University of the Ryukyus: Hidetoshi Ota; from my Indonesian friends: Frank Bambang Yuwono, Ibu Mumpuni (MZB), Djoko Iskandar (ITB); from the Philippine National Museum (PNM): Arvin C. -
Intraspecific Relationships of Populations of the Brown Frog Rana Sauteri (Ranidae) on Taiwan, Inferred from Mitochondrial Cytochrome B Sequences
ZOOLOGICAL SCIENCE 26: 608–616 (2009) ¤ 2009 Zoological Society of Japan Intraspecific Relationships of Populations of the Brown Frog Rana sauteri (Ranidae) on Taiwan, Inferred from Mitochondrial Cytochrome b Sequences Nian-Hong Jang-Liaw1* and Tsung-Han Lee2 1Department of Zoology, National Museum of Natural Science, 1st Kuang-Chien Rd., Taichung 40453, Taiwan 2Department of Life Sciences, National Chung Hsing University, 250 Kuo-Kuang Rd., Taichung 40227, Taiwan We studied the phylogenetic relationships among populations of Rana sauteri using partial sequences of the mitochondrial cytochrome b gene from 244 samples from 29 localities in Taiwan. We detected 77 haplotypes among these sequences. The phylogenetic trees contained five distinct lineages: the northern (NL), eastern (EL), southern hill (SHL), northern mountain (NML), and south- ern mountain (SML) lineages, defined by geographical distribution. The lineage phylogeny did not support the two-species hypothesis inferred from larval morphology. To describe the possible col- onization history of R. sauteri in Taiwan, we propose hypotheses of within-island differentiation and a multiple-invasion model. Using a molecular clock, we estimated the order of divergence times between lineages in order to test the migration hypothesis. The multiple-invasion model was well supported by the phylogeny and a nested clade network. Key words: Rana sauteri, mtDNA, cytochrome b, phylogeography, Taiwan include Guangxi Province, China (Tian and Jian, 1986; Zhao INTRODUCTION and Adler, 1993). Unfortunately, no specimens of R. sauteri Taiwan is a subtropical island located between 21°53’N from China were located for examination. Smith (1921) and 25°37’N, with mountains up to 3952 m high. -
The Herpetological Journal
Volume 15, Number 2 April 2005 ISSN 0268-0130 THE HERPETOLOGICAL JOURNAL Published by the Indexed in BRITISH HERPETOLOGICAL SOCIETY Current Contents The Herpetological Journal is published quarterly by the British Herpetological Society and is issued free to members. Articles are listed in Current Awareness in Biological Sciences, Current Contents, Science Citation Index and Zoological Record. Applications to purchase copies and/or for details of membership should be made to the Hon. Secretary, British Herpetological Society, The Zoological Society of London, Regent's Park, London NWI 4RY, UK. Instructions to authors are printed inside the back cover. All contributions should be addressed to the Scientific Editor (address below). Scientific Editor: Wolfgang Wiister, School of Biological Sciences, University of Wales, Bangor, Gwynedd, LL57 2UW, UK. E-mail: [email protected] Associate Scientific Editors: J. W. Arntzen (Leiden), R. Brown (Liverpool) Managing Editor: Richard A. Griffiths, The Durrell Institute of Conservation and Ecology, University of Kent, Canterbury, Kent CT2 7NS, UK. E-mail: [email protected] Associate Managing Editors: M. Dos Santos, J. McKay, M. Lock Editorial Board: Donald Broadley (Zimbabwe) John Cooper (Uganda) John Davenport (Cork) Andrew Gardner (Abu Dhabi) Tim Halliday (Milton Keynes) Michael Klemens (New York) Colin McCarthy (London) Andrew Milner (London) Richard Tinsley (Bristol) Copyright It is a fundamental condition that submitted manuscripts have not been published and will not be simultaneously submitted or published elsewhere. By submitting a manu script, the authors agree that the copyright for their article is transferred to the publisher if and when the article is accepted for publication.