A Survey of Patterns of Diversity in Non-Lichenized Fungi
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Major Clades of Agaricales: a Multilocus Phylogenetic Overview
Mycologia, 98(6), 2006, pp. 982–995. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 Major clades of Agaricales: a multilocus phylogenetic overview P. Brandon Matheny1 Duur K. Aanen Judd M. Curtis Laboratory of Genetics, Arboretumlaan 4, 6703 BD, Biology Department, Clark University, 950 Main Street, Wageningen, The Netherlands Worcester, Massachusetts, 01610 Matthew DeNitis Vale´rie Hofstetter 127 Harrington Way, Worcester, Massachusetts 01604 Department of Biology, Box 90338, Duke University, Durham, North Carolina 27708 Graciela M. Daniele Instituto Multidisciplinario de Biologı´a Vegetal, M. Catherine Aime CONICET-Universidad Nacional de Co´rdoba, Casilla USDA-ARS, Systematic Botany and Mycology de Correo 495, 5000 Co´rdoba, Argentina Laboratory, Room 304, Building 011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350 Dennis E. Desjardin Department of Biology, San Francisco State University, Jean-Marc Moncalvo San Francisco, California 94132 Centre for Biodiversity and Conservation Biology, Royal Ontario Museum and Department of Botany, University Bradley R. Kropp of Toronto, Toronto, Ontario, M5S 2C6 Canada Department of Biology, Utah State University, Logan, Utah 84322 Zai-Wei Ge Zhu-Liang Yang Lorelei L. Norvell Kunming Institute of Botany, Chinese Academy of Pacific Northwest Mycology Service, 6720 NW Skyline Sciences, Kunming 650204, P.R. China Boulevard, Portland, Oregon 97229-1309 Jason C. Slot Andrew Parker Biology Department, Clark University, 950 Main Street, 127 Raven Way, Metaline Falls, Washington 99153- Worcester, Massachusetts, 01609 9720 Joseph F. Ammirati Else C. Vellinga University of Washington, Biology Department, Box Department of Plant and Microbial Biology, 111 355325, Seattle, Washington 98195 Koshland Hall, University of California, Berkeley, California 94720-3102 Timothy J. -
Phylogenetic Relationships of Rhizoctonia Fungi Within the Cantharellales
fungal biology 120 (2016) 603e619 journal homepage: www.elsevier.com/locate/funbio Phylogenetic relationships of Rhizoctonia fungi within the Cantharellales Dolores GONZALEZa,*, Marianela RODRIGUEZ-CARRESb, Teun BOEKHOUTc, Joost STALPERSc, Eiko E. KURAMAEd, Andreia K. NAKATANIe, Rytas VILGALYSf, Marc A. CUBETAb aInstituto de Ecologıa, A.C., Red de Biodiversidad y Sistematica, Carretera Antigua a Coatepec No. 351, El Haya, 91070 Xalapa, Veracruz, Mexico bDepartment of Plant Pathology, North Carolina State University, Center for Integrated Fungal Research, Campus Box 7251, Raleigh, NC 27695, USA cCBS Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands dDepartment of Microbial Ecology, Netherlands Institute of Ecology (NIOO/KNAW), Droevendaalsesteeg 10, 6708 PB Wageningen, The Netherlands eUNESP, Faculdade de Ci^encias Agronomicas,^ CP 237, 18603-970 Botucatu, SP, Brazil fDepartment of Biology, Duke University, Durham, NC 27708, USA article info abstract Article history: Phylogenetic relationships of Rhizoctonia fungi within the order Cantharellales were studied Received 2 January 2015 using sequence data from portions of the ribosomal DNA cluster regions ITS-LSU, rpb2, tef1, Received in revised form and atp6 for 50 taxa, and public sequence data from the rpb2 locus for 165 taxa. Data sets 1 January 2016 were analysed individually and combined using Maximum Parsimony, Maximum Likeli- Accepted 19 January 2016 hood, and Bayesian Phylogenetic Inference methods. All analyses supported the mono- Available online 29 January 2016 phyly of the family Ceratobasidiaceae, which comprises the genera Ceratobasidium and Corresponding Editor: Thanatephorus. Multi-locus analysis revealed 10 well-supported monophyletic groups that Joseph W. Spatafora were consistent with previous separation into anastomosis groups based on hyphal fusion criteria. -
Three New Species of Cortinarius Subgenus Telamonia (Cortinariaceae, Agaricales) from China
A peer-reviewed open-access journal MycoKeys 69: 91–109 (2020) Three new species in Cortinarius from China 91 doi: 10.3897/mycokeys.69.49437 RESEARCH ARTICLE MycoKeys http://mycokeys.pensoft.net Launched to accelerate biodiversity research Three new species of Cortinarius subgenus Telamonia (Cortinariaceae, Agaricales) from China Meng-Le Xie1,2, Tie-Zheng Wei3, Yong-Ping Fu2, Dan Li2, Liang-Liang Qi4, Peng-Jie Xing2, Guo-Hui Cheng5,2, Rui-Qing Ji2, Yu Li2,1 1 Life Science College, Northeast Normal University, Changchun 130024, China 2 Engineering Research Cen- ter of Edible and Medicinal Fungi, Ministry of Education, Jilin Agricultural University, Changchun 130118, China 3 State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China 4 Microbiology Research Institute, Guangxi Academy of Agriculture Sciences, Nanning, 530007, China 5 College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, China Corresponding authors: Rui-Qing Ji ([email protected]), Yu Li ([email protected]) Academic editor: O. Raspé | Received 16 December 2019 | Accepted 23 June 2020 | Published 14 July 2020 Citation: Xie M-L, Wei T-Z, Fu Y-P, Li D, Qi L-L, Xing P-J, Cheng G-H, Ji R-Q, Li Y (2020) Three new species of Cortinarius subgenus Telamonia (Cortinariaceae, Agaricales) from China. MycoKeys 69: 91–109. https://doi. org/10.3897/mycokeys.69.49437 Abstract Cortinarius is an important ectomycorrhizal genus that forms a symbiotic relationship with certain trees, shrubs and herbs. Recently, we began studying Cortinarius in China and here we describe three new spe- cies of Cortinarius subg. Telamonia based on morphological and ecological characteristics, together with phylogenetic analyses. -
Bibliotheksliste-Aarau-Dezember 2016
Bibliotheksverzeichnis VSVP + Nur im Leesesaal verfügbar, * Dissert. Signatur Autor Titel Jahrgang AKB Myc 1 Ricken Vademecum für Pilzfreunde. 2. Auflage 1920 2 Gramberg Pilze der Heimat 2 Bände 1921 3 Michael Führer für Pilzfreunde, Ausgabe B, 3 Bände 1917 3 b Michael / Schulz Führer für Pilzfreunde. 3 Bände 1927 3 Michael Führer für Pilzfreunde. 3 Bände 1918-1919 4 Dumée Nouvel atlas de poche des champignons. 2 Bände 1921 5 Maublanc Les champignons comestibles et vénéneux. 2 Bände 1926-1927 6 Negri Atlante dei principali funghi comestibili e velenosi 1908 7 Jacottet Les champignons dans la nature 1925 8 Hahn Der Pilzsammler 1903 9 Rolland Atlas des champignons de France, Suisse et Belgique 1910 10 Crawshay The spore ornamentation of the Russulas 1930 11 Cooke Handbook of British fungi. Vol. 1,2. 1871 12/ 1,1 Winter Die Pilze Deutschlands, Oesterreichs und der Schweiz.1. 1884 12/ 1,5 Fischer, E. Die Pilze Deutschlands, Oesterreichs und der Schweiz. Abt. 5 1897 13 Migula Kryptogamenflora von Deutschland, Oesterreich und der Schweiz 1913 14 Secretan Mycographie suisse. 3 vol. 1833 15 Bourdot / Galzin Hymenomycètes de France (doppelt) 1927 16 Bigeard / Guillemin Flore des champignons supérieurs de France. 2 Bände. 1913 17 Wuensche Die Pilze. Anleitung zur Kenntnis derselben 1877 18 Lenz Die nützlichen und schädlichen Schwämme 1840 19 Constantin / Dufour Nouvelle flore des champignons de France 1921 20 Ricken Die Blätterpilze Deutschlands und der angr. Länder. 2 Bände 1915 21 Constantin / Dufour Petite flore des champignons comestibles et vénéneux 1895 22 Quélet Les champignons du Jura et des Vosges. P.1-3+Suppl. -
Historical Biogeography and Diversification of the Cosmopolitan Ectomycorrhizal Mushroom Family Inocybaceae
Out of the Palaeotropics? Historical biogeography and diversification of the cosmopolitan ectomycorrhizal mushroom family Inocybaceae P. Brandon Matheny1*, M. Catherine Aime2, Neale L. Bougher3, Bart Buyck4, Dennis E. Desjardin5, Egon Horak6, Bradley R. Kropp7, D. Jean Lodge8, Kasem Soytong9, James M. Trappe10 and David S. Hibbett11 ABSTRACT Aim The ectomycorrhizal (ECM) mushroom family Inocybaceae is widespread in north temperate regions, but more than 150 species are encountered in the tropics and the Southern Hemisphere. The relative roles of recent and ancient biogeographical processes, relationships with plant hosts, and the timing of divergences that have shaped the current geographic distribution of the family are investigated. location Africa, Australia, Neotropics, New Zealand, north temperate zone, Palaeotropics, Southeast Asia, South America, south temperate zone. Methods We reconstruct a phylogeny of the Inocybaceae with a geological timeline using a relaxed molecular clock. Divergence dates of lineages are estimated statistically to test vicariance-based hypotheses concerning relatedness of disjunct ECM taxa. A series of internal maximum time constraints is used to evaluate two different calibrations. Ancestral state reconstruction is used to infer ancestral areas and ancestral plant partners of the family. Results The Palaeotropics are unique in containing representatives of all major clades of Inocybaceae. Six of the seven major clades diversified initially during the Cretaceous, with subsequent radiations probably during the early Palaeogene. Vicariance patterns cannot be rejected that involve area relationships for Africa- Australia, Africa-India and southern South America-Australia. Northern and southern South America, Australia and New Zealand are primarily the recipients of immigrant taxa during the Palaeogene or later. Angiosperms were the earliest hosts of Inocybaceae. -
Loose Ends in the Cortinarius Phylogeny: Five New Myxotelamonoid Species Indicate a High Diversity of These Ectomycorrhizal Fungi with South American Nothofagaceae
life Article Loose Ends in the Cortinarius Phylogeny: Five New Myxotelamonoid Species Indicate a High Diversity of These Ectomycorrhizal Fungi with South American Nothofagaceae María Eugenia Salgado Salomón 1,2,3,* , Carolina Barroetaveña 1,2,3 , Tuula Niskanen 4, Kare Liimatainen 4, Matthew E. Smith 5 and Ursula Peintner 6 1 Centro Forestal CIEFAP, CC 14, Ruta N◦ 259 km 16.24, Esquel 9200, Argentina; [email protected] 2 Universidad Nacional de la Patagonia S.J. Bosco, Esquel Sarmiento 849, Chubut 9200, Argentina 3 Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Godoy Cruz 2290, Buenos Aires 1425, Argentina 4 Jodrell Laboratory, Royal Botanic Gardens, Kew, Surrey TW9 3AB, UK; tuula.niskanen@cortinarius.fi (T.N.); [email protected] (K.L.) 5 Department of Plant Pathology, University of Florida, P.O. Box 110680, Gainesville, FL 32611, USA; trufflesmith@ufl.edu 6 Institute of Microbiology, University Innsbruck, 6020 Innsbruck, Austria; [email protected] * Correspondence: [email protected]; Tel.: +54-2945-453948 Abstract: This paper is a contribution to the current knowledge of taxonomy, ecology and distribution Citation: Salgado Salomón, M.E.; of South American Cortinarius (Pers.) Gray. Cortinarius is among the most widely distributed and Barroetaveña, C.; Niskanen, T.; species-rich basidiomycete genera occurring with South American Nothofagaceae and species are Liimatainen, K.; Smith, M.E.; Peintner, found in many distinct habitats, including shrublands and forests. Due to their ectomycorrhizal role, U. Loose Ends in the Cortinarius Cortinarius species are critical for nutrient cycling in forests, especially at higher latitudes. Some Phylogeny: Five New species have also been reported as edible fungi with high nutritional quality. -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
MUSHROOMS of the OTTAWA NATIONAL FOREST Compiled By
MUSHROOMS OF THE OTTAWA NATIONAL FOREST Compiled by Dana L. Richter, School of Forest Resources and Environmental Science, Michigan Technological University, Houghton, MI for Ottawa National Forest, Ironwood, MI March, 2011 Introduction There are many thousands of fungi in the Ottawa National Forest filling every possible niche imaginable. A remarkable feature of the fungi is that they are ubiquitous! The mushroom is the large spore-producing structure made by certain fungi. Only a relatively small number of all the fungi in the Ottawa forest ecosystem make mushrooms. Some are distinctive and easily identifiable, while others are cryptic and require microscopic and chemical analyses to accurately name. This is a list of some of the most common and obvious mushrooms that can be found in the Ottawa National Forest, including a few that are uncommon or relatively rare. The mushrooms considered here are within the phyla Ascomycetes – the morel and cup fungi, and Basidiomycetes – the toadstool and shelf-like fungi. There are perhaps 2000 to 3000 mushrooms in the Ottawa, and this is simply a guess, since many species have yet to be discovered or named. This number is based on lists of fungi compiled in areas such as the Huron Mountains of northern Michigan (Richter 2008) and in the state of Wisconsin (Parker 2006). The list contains 227 species from several authoritative sources and from the author’s experience teaching, studying and collecting mushrooms in the northern Great Lakes States for the past thirty years. Although comments on edibility of certain species are given, the author neither endorses nor encourages the eating of wild mushrooms except with extreme caution and with the awareness that some mushrooms may cause life-threatening illness or even death. -
Kavaka Title Curve-44.Cdr
VOL 44 2015 MYCOLOGICAL SOCIETY OF INDIA President PROF. B. N. JOHRI Past President PROF. T. SATYANARAYANA Vice President DR. M.V. DESHPANDE Secretary PROF. N. RAAMAN Treasurer PROF. M. SUDHAKARA REDDY Editor PROF. N.S. ATRI Editorial Board PROF. NILS HALLEMBERG, PROF. URMAS KOLJALG, PROF. B.P.R. VITTAL, PROF. ASHOK CHAVAN, PROF. S. MOHAN, KARUPPAYIL, PROF. M. CHANDRASEKARAN, PROF. K. MANJUNATH, DR. S.K. DESHMUKH, DR. R.C. UPADHYAY, PROF. SARITA W. NAZARETH, DR. M.V. DESHPANDE, DR. MUNRUCHI KAUR Members of Council PROF. N.K. DUBEY, DR. SAJAL SAJU DEO, DR. RUPAM KAPOOR, PROF. YASHPAL SHARMA, DR. AVNEET PAL SINGH, DR. SANJAY K. SINGH, DR. CHINTHALA PARAMAGEETHAM, DR. K.B. PURUSHOTHAMA, DR. K. SAMBANDAN, DR. SATISH KUMAR VERMA The Mycological Society of India was founded in January 1973 with a view to bring together the mycologists of the country and with the broad objective of promoting the development of Mycology in India in all its aspects and in the widest perspective. Memebership is open to all interested in mycology. The Life Member subscription is Rs. 3000+50/- in India and £100 or US$ 200 for those in abroad. The annual member subscription is Rs. 500+50/- in India and £20 or US $ 40 for those in abroad. Subscriptions are to be sent to the Treasurer,Prof. M. Sudhakara Reddy, Department of Biotechnology, Thaper University, Patiala-147004, Punjab, India (Email: [email protected] ). All general correspondence should be addressed toProf. N.Raaman, Secretary, MSI, C.A.S. in Botany, University of Madras, Guindy Campus, Chennai-600 025, India(Email: [email protected] ). -
Mycological Notes 40: the Family Bolbitiaceae in New Zealand
Mycological Notes 40: The family Bolbitiaceae in New Zealand Jerry Cooper, August 20th 2020 Introduction As usual with my informal ‘Mycological Notes’ this is a very preliminary outline of the current New Zealand data for the species in this family. Many of the collections are cited with my personal accession numbers (JAC) but all are deposited in the PDD national fungarium. More details may found on each collection by searching for these numbers on the Systematic Collection Data website (https://scd.landcareresearch.co.nz/). The sequence data will be deposited in GenBank when my studies are completed. The Bolbitiaceae is a family of agarics containing relatively few genera traditionally characterised by small, fragile fruitbodies, often with long stems, a cinnamon spore print colour and most significantly a hymeniderm (cellular) cap surface. The family was last revised in New Zealand by Roy Watling and Marie Taylor in 1987. At that time, the family was thought to include just Agrocybe, Conocybe and Bolbitius. The genera making up family have changed in recent years because of insights provided by phylogenetic information from gene sequencing. In 2014 I used the data generated during the US- led Assembling the Fungal Tree of Life project (Spatafora, 2005) and added many New Zealand species to see where they fitted into the phylogeny (Cooper, 2014). In that tree it may be seen that Agrocybe falls-out in two places and neither is within the Bolbitaceae. Agrocybe erebia, which is closely related to our Agrocybe parasitica, is sister to, or within the Tubariaceae, and I predicted it would need a new generic name, and I suggested Aporocybe. -
Family Latin Name Notes Agaricaceae Agaricus Californicus Possible; No
This Provisional List of Terrestrial Fungi of Big Creek Reserve is taken is taken from : (GH) Hoffman, Gretchen 1983 "A Preliminary Survey of the Species of Fungi of the Landels-Hill Big Creek Reserve", unpublished manuscript Environmental Field Program, University of California, Santa Cruz Santa Cruz note that this preliminary list is incomplete, nomenclature has not been checked or updated, and there may have been errors in identification. Many species' identifications are based on one specimen only, and should be considered provisional and subject to further verification. family latin name notes Agaricaceae Agaricus californicus possible; no specimens collected Agaricaceae Agaricus campestris a specimen in grassland soils Agaricaceae Agaricus hondensis possible; no spcimens collected Agaricaceae Agaricus silvicola group several in disturbed grassland soils Agaricaceae Agaricus subrufescens one specimen in oak woodland roadcut soil Agaricaceae Agaricus subrutilescens Two specimenns in pine-manzanita woodland Agaricaceae Agaricus arvensis or crocodillinus One specimen in grassland soil Agaricaceae Agaricus sp. (cupreobrunues?) One specimen in grassland soil Agaricaceae Agaricus sp. (meleagris?) Three specimens in tanoak duff of pine-manzanita woodland Agaricaceae Agaricus spp. Other species in soiils of woodland and grassland Amanitaceae Amanita calyptrata calyptroderma One specimen in mycorrhizal association with live oak in live oak woodland Amanitaceae Amanita chlorinosa Two specimens in mixed hardwood forest soils Amanitaceae Amanita fulva One specimen in soil of pine-manzanita woodland Amanitaceae Amanita gemmata One specimen in soil of mixed hardwood forest Amanitaceae Amanita pantherina One specimen in humus under Monterey Pine Amanitaceae Amanita vaginata One specimen in humus of mixed hardwood forest Amanitaceae Amanita velosa Two specimens in mycorrhizal association with live oak in oak woodland area Bolbitiaceae Agrocybe sp. -
The New Genus Auritella from Africa and Australia (Inocybaceae, Agaricales): Molecular Systematics, Taxonomy and Historical Biogeography
Mycol Progress (2006) 5: 2–17 DOI 10.1007/s11557-005-0001-8 ORIGINAL ARTICLE P. Brandon Matheny . Neale L. Bougher The new genus Auritella from Africa and Australia (Inocybaceae, Agaricales): molecular systematics, taxonomy and historical biogeography Received: 10 January 2005 / Revised: 21 September 2005 / Accepted: 11 October 2005 / Published online: 14 February 2006 # German Mycological Society and Springer-Verlag 2006 Abstract Recent phylogenetic evidence strongly supports a Introduction monophyletic group of Afro-Australian mushroom species with phenotypic affinities to the genus Inocybe (Agaricales, Progress towards generating a phylogenetic-based classi- Basidiomycota). In this study, this clade is proposed as the fication of Inocybe and allies in the Agaricales or euagarics new genus Auritella. Seven species are fully documented clade has been accelerated recently by several molecular with taxonomic descriptions and illustrations, four of which systematic studies of the group (Kropp and Matheny 2004; are described as new, including one sequestrate or truffle-like Matheny et al. 2002; Matheny 2005; Matheny and species. A key to genera and major clades of the Inocybaceae Ammirati 2003; Matheny and Watling 2004). In particular, and a key to species of Auritella are provided. A maximum Matheny (2005) demonstrated the monophyly of five likelihood tree using rpb2 and nLSU-rDNA nucleotide major lineages within Inocybe and provided strong sequences depicts the phylogenetic relationships of five of evidence for a sister relationship between the Inocybaceae, the seven species of the genus, of which the Australian taxa a monophyletic family of ectomycorrhizal species, and the form a monophyletic group. An ancient split between Crepidotaceae, a family of saprophytic species.