MAPK4 Overexpression Promotes Tumor Progression Via Noncanonical Activation of AKT/Mtor Signaling
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A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
N-Glycan Trimming in the ER and Calnexin/Calreticulin Cycle
Neurotransmitter receptorsGABA and A postsynapticreceptor activation signal transmission Ligand-gated ion channel transport GABAGABA Areceptor receptor alpha-5 alpha-1/beta-1/gamma-2 subunit GABA A receptor alpha-2/beta-2/gamma-2GABA receptor alpha-4 subunit GABAGABA receptor A receptor beta-3 subunitalpha-6/beta-2/gamma-2 GABA-AGABA receptor; A receptor alpha-1/beta-2/gamma-2GABA receptoralpha-3/beta-2/gamma-2 alpha-3 subunit GABA-A GABAreceptor; receptor benzodiazepine alpha-6 subunit site GABA-AGABA-A receptor; receptor; GABA-A anion site channel (alpha1/beta2 interface) GABA-A receptor;GABA alpha-6/beta-3/gamma-2 receptor beta-2 subunit GABAGABA receptorGABA-A receptor alpha-2receptor; alpha-1 subunit agonist subunit GABA site Serotonin 3a (5-HT3a) receptor GABA receptorGABA-C rho-1 subunitreceptor GlycineSerotonin receptor subunit3 (5-HT3) alpha-1 receptor GABA receptor rho-2 subunit GlycineGlycine receptor receptor subunit subunit alpha-2 alpha-3 Ca2+ activated K+ channels Metabolism of ingested SeMet, Sec, MeSec into H2Se SmallIntermediateSmall conductance conductance conductance calcium-activated calcium-activated calcium-activated potassium potassium potassiumchannel channel protein channel protein 2 protein 1 4 Small conductance calcium-activatedCalcium-activated potassium potassium channel alpha/beta channel 1 protein 3 Calcium-activated potassiumHistamine channel subunit alpha-1 N-methyltransferase Neuraminidase Pyrimidine biosynthesis Nicotinamide N-methyltransferase Adenosylhomocysteinase PolymerasePolymeraseHistidine basic -
YAP and TAZ Mediators at the Crossroad Between Metabolic and Cellular Reprogramming
H OH metabolites OH Review YAP and TAZ Mediators at the Crossroad between Metabolic and Cellular Reprogramming Giorgia Di Benedetto, Silvia Parisi , Tommaso Russo and Fabiana Passaro * Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, 40, 80138 Napoli, Italy; [email protected] (G.D.B.); [email protected] (S.P.); [email protected] (T.R.) * Correspondence: [email protected] Abstract: Cell reprogramming can either refer to a direct conversion of a specialized cell into another or to a reversal of a somatic cell into an induced pluripotent stem cell (iPSC). It implies a peculiar modification of the epigenetic asset and gene regulatory networks needed for a new cell, to better fit the new phenotype of the incoming cell type. Cellular reprogramming also implies a metabolic rearrangement, similar to that observed upon tumorigenesis, with a transition from oxidative phosphorylation to aerobic glycolysis. The induction of a reprogramming process requires a nexus of signaling pathways, mixing a range of local and systemic information, and accumulating evidence points to the crucial role exerted by the Hippo pathway components Yes-Associated Protein (YAP) and Transcriptional Co-activator with PDZ-binding Motif (TAZ). In this review, we will first provide a synopsis of the Hippo pathway and its function during reprogramming and tissue regeneration, then we introduce the latest knowledge on the interplay between YAP/TAZ Citation: Di Benedetto, G.; Parisi, S.; and metabolism and, finally, we discuss the possible role of YAP/TAZ in the orchestration of the Russo, T.; Passaro, F. YAP and TAZ metabolic switch upon cellular reprogramming. -
Regulation of Skeletal Muscle Metabolism and Development by Small, Non-Coding Rnas: Implications for Insulin Resistance and Type 2 Diabetes Mellitus
From the Department of Molecular Medicine and Surgery Karolinska Institutet, Stockholm, Sweden Regulation of Skeletal Muscle Metabolism and Development by Small, Non-Coding RNAs: Implications for Insulin Resistance and Type 2 Diabetes Mellitus Rasmus Sjögren Stockholm 2018 All previously published papers were reproduced with permission from the publisher. © 2017 by the American Diabetes Association ® Diabetes 2017 Jul; 66(7): 1807-1818 Reprinted with permission from the American Diabetes Association ® Published by Karolinska Institutet. Printed by Eprint AB, 2018. © Rasmus Sjögren, 2018. ISBN 978-91-7831-057-9 Department of Molecular Medicine and Surgery Regulation of Skeletal Muscle Metabolism and Development by Small, Non-Coding RNAs: Implications for Insulin Resistance and Type 2 Diabetes Mellitus THESIS FOR DOCTORAL DEGREE (Ph.D.) by Rasmus Sjögren Defended on: Wednesday the 13th of June 2018, 12:30 pm Hillarpsalen, Retzius väg 8, Stockholm Principal Supervisor: Opponent: Prof Juleen R. Zierath Prof Markus Stoffel Karolinska Institutet Swiss Federal Institute of Technology in Zurich Department of Molecular Medicine and Surgery Department of Biology Division of Integrative Physiology Division of Metabolism and Metabolic Diseases Co-supervisor(s): Examination Board: Prof Anna Krook Prof Ulf Eriksson Karolinska Institutet Karolinska Insitutet Department of Physiology and Pharmacology Department of Medical Biochemistry and Bio- Division of Integrative Physiology physics Division of Vascular Biology Prof Eckardt Treuter Karolinska Insitutet Department of Biosciences and Nutrition Division of Epigenome Regulation Prof Lena Eliasson Lund University Department of Clinical Sciences, Malmö Division of Islet Cell Exocytosis ABSTRACT microRNAs (miRNAs) are a class of epigenetic post-transcriptional regulators. These short (~22 nucleotides) non-coding RNAs can potently reduce protein abundance through direction of the RNA-induced silencing complex to targeted genes. -
IGF2BP1 Is a Targetable SRC/MAPK-Dependent Driver Of
bioRxiv preprint doi: https://doi.org/10.1101/2020.06.19.159905; this version posted June 20, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 IGF2BP1 is a targetable SRC/MAPK-dependent driver of invasive growth in ovarian 2 cancer 3 4 Authors: Nadine Bley1*$#, Annekatrin Schott1*, Simon Müller1, Danny Misiak1, Marcell 5 Lederer1, Tommy Fuchs1, Chris Aßmann1, Markus Glaß1, Christian Ihling2, Andrea Sinz2, 6 Nikolaos Pazaitis3, Claudia Wickenhauser3, Martina Vetter4, Olga Ungurs4, Hans-Georg 7 Strauss4, Christoph Thomssen4, Stefan Hüttelmaier1$. 8 9 10 Addresses: 11 1 Sect. Molecular Cell Biology, Inst. of Molecular Medicine, Charles Tanford Protein Center, 12 Medical Faculty, Martin Luther University Halle-Wittenberg, Kurt-Mothes-Str. 3A, 06120 Halle, 13 Germany 14 2 Dept. of Pharmaceutical Chemistry & Bioanalytics, Inst. of Pharmacy, Charles Tanford 15 Protein Center, Martin Luther University Halle-Wittenberg, Kurt-Mothes Str. 3A, 06120 Halle, 16 Germany 17 3 Inst. of Pathology, Medical Faculty, Martin Luther University Halle-Wittenberg, Magdeburger 18 Str. 14, 06112 Halle, Germany 19 4 Clinics for Gynecology, Medical Faculty, Martin Luther University Halle-Wittenberg, Ernst- 20 Grube-Str. 40, 06120 Halle, Germany 21 22 23 * These authors contributed equally to this work 24 $ shared corresponding authorship 25 # Correspondence: should be addressed to Nadine Bley 26 Running title: IGF2BP1-directed AJ disassembly depends on SRC activation 27 Disclosure of Potential Conflicts of Interests: the authors declare no conflicts of interest. -
HHS Public Access Author Manuscript
HHS Public Access Author manuscript Author Manuscript Author ManuscriptBreast Cancer Author Manuscript Res Treat Author Manuscript . Author manuscript; available in PMC 2016 June 01. Published in final edited form as: Breast Cancer Res Treat. 2015 June ; 151(2): 453–463. doi:10.1007/s10549-015-3401-8. Body mass index associated with genome-wide methylation in breast tissue Brionna Y. Hair1, Zongli Xu2, Erin L. Kirk1, Sophia Harlid2, Rupninder Sandhu3, Whitney R. Robinson1,3, Michael C. Wu4, Andrew F. Olshan1, Kathleen Conway1,3, Jack A. Taylor2, and Melissa A. Troester1 1 Department of Epidemiology, University of North Carolina at Chapel Hill, CB #7435, 2101 McGavran-Greenberg Hall, Chapel Hill, NC 27599-7435, USA 2 Epidemiology Branch, and Epigenomics and Stem Cell Biology Laboratory, National Institute of Environmental Health Sciences (NIH), Research Triangle Park, NC, USA 3 Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA 4 Fred Hutchinson Cancer Research Center, Seattle, WA, USA Abstract Gene expression studies indicate that body mass index (BMI) is associated with molecular pathways involved in inflammation, insulin-like growth factor activation, and other carcinogenic processes in breast tissue. The goal of this study was to determine whether BMI is associated with gene methylation in breast tissue and to identify pathways that are commonly methylated in association with high BMI. Epigenome-wide methylation profiles were determined using the Illumina HumanMethylation450 BeadChip array in the non-diseased breast tissue of 81 women undergoing breast surgery between 2009 and 2013 at the University of North Carolina Hospitals. Multivariable, robust linear regression was performed to identify methylation sites associated with BMI at a false discovery rate q value <0.05. -
Table 1 Top 100 Phosphorylated Substrates and Their Corresponding Kinases in Chondrosarcoma Cultures As Used for IPA Analysis
Table 1 Top 100 phosphorylated substrates and their corresponding kinases in chondrosarcoma cultures as used for IPA analysis. Average Fold Adj intensity in Change p- chondrosarcoma Corresponding MSC value cultures Substrate Protein Psite kinase (log2) MSC 1043.42 RKKKVSSTKRH Cytohesin-1 S394 PKC 1.83 0.001 746.95 RKGYRSQRGHS Vitronectin S381 PKC 1.00 0.056 709.03 RARSTSLNERP Tuberin S939 AKT1 1.64 0.008 559.42 SPPRSSLRRSS Transcription elongation factor A-like1 S37 PKC; GSK3 0.18 0.684 515.29 LRRSLSRSMSQ Telethonin S157 Titin 0.77 0.082 510.00 MQPDNSSDSDY CD5 T434 PKA -0.35 0.671 476.27 GGRGGSRARNL Heterogeneous nuclear ribonucleoprotein K S302 PKCdelta 1.03 0.028 455.97 LKPGSSHRKTK Bruton's tyrosine kinase S180 PKCbeta 1.55 0.001 444.65 RRRMASMQRTG E1A binding protein p300 S1834 AKT; p70S6 kinase; pp90Rsk 0.53 0.195 Guanine nucleotide binding protein, alpha Z 440.26 HLRSESQRQRR polypeptide S27 PKC 0.88 0.199 6-phosphofructo-2-kinase/fructose-2,6- 424.12 RPRNYSVGSRP biphosphatase 2 S483 AKT 1.32 0.003 419.61 KKKIATRKPRF Metabotropic glutamate receptor 1 T695 PKC 1.75 0.001 391.21 DNSSDSDYDLH CD5 T453 Lck; Fyn -2.09 0.001 377.39 LRQLRSPRRAQ Ras associated protein Rab4 S204 CDC2 0.63 0.091 376.28 SSQRVSSYRRT Desmin S12 Aurora kinase B 0.56 0.255 369.05 ARIGGSRRERS EP4 receptor S354 PKC 0.29 0.543 RPS6 kinase alpha 3; PKA; 367.99 EPKRRSARLSA HMG14 S7 PKC -0.01 0.996 Peptidylglycine alpha amidating 349.08 SRKGYSRKGFD monooxygenase S930 PKC 0.21 0.678 347.92 RRRLSSLRAST Ribosomal protein S6 S236 PAK2 0.02 0.985 346.84 RSNPPSRKGSG Connexin -
Lncmapk6 Drives MAPK6 Expression and Liver TIC Self-Renewal
Huang et al. Journal of Experimental & Clinical Cancer Research (2018) 37:105 https://doi.org/10.1186/s13046-018-0770-y RESEARCH Open Access LncMAPK6 drives MAPK6 expression and liver TIC self-renewal Guanqun Huang1†, Hui Jiang2†, Yueming He2, Ye Lin3, Wuzheng Xia3, Yuanwei Luo1, Min Liang2, Boyun Shi2, Xinke Zhou2* and Zhixiang Jian3* Abstract Background: Liver tumor initiating cells (TICs) have self-renewal and differentiate capacities, and largely contribute to tumor initiation, metastasis and drug resistance. MAPK signaling is a critical pathway in many biological processes, while its role in liver TICs hasn’tbeenexplored. Methods: Online-available dataset was used for unbiased screening. Liver TICs were examined CD133 FACS or oncosphere formation. TIC self-renewal was detected by oncosphere formation and tumor initiation assay. LncRNA function was detected by loss of function or gain of function assays. The molecular mechanism of lncRNA was explored by RNA pulldown, RNA immunoprecipitation, ChIP, western blot and double FISH. Results: Here, we examined the expression profiles of MAPK components (MAPKs, MAP2Ks, MAP3Ks, MAP4Ks), and found MAPK6 is most highly expressed in liver cancer samples. Moreover, a divergent lncRNA (long noncoding RNA) of MAPK6, termed lncMAPK6 here, is also overexpressed along with liver tumorigenesis. LncMAPK6 promotes liver tumor propagation and TIC self-renewal through MAPK6. LncMAPK6 interacts with and recruits RNA polymerase II to MAPK6 promoter, and finally activates the transcription of MAPK6. Through MAPK6 transcriptional regulation, lncMAPK6 drives MARK signaling activation. LncMAPK6-MAPK6 pathway can be used for liver TIC targeting. Altogether, lncMAPK6 promotes MARK signaling and the self-renewal of liver TICs through MAPK6 expression. -
Human Kinases Info Page
Human Kinase Open Reading Frame Collecon Description: The Center for Cancer Systems Biology (Dana Farber Cancer Institute)- Broad Institute of Harvard and MIT Human Kinase ORF collection from Addgene consists of 559 distinct human kinases and kinase-related protein ORFs in pDONR-223 Gateway® Entry vectors. All clones are clonal isolates and have been end-read sequenced to confirm identity. Kinase ORFs were assembled from a number of sources; 56% were isolated as single cloned isolates from the ORFeome 5.1 collection (horfdb.dfci.harvard.edu); 31% were cloned from normal human tissue RNA (Ambion) by reverse transcription and subsequent PCR amplification adding Gateway® sequences; 11% were cloned into Entry vectors from templates provided by the Harvard Institute of Proteomics (HIP); 2% additional kinases were cloned into Entry vectors from templates obtained from collaborating laboratories. All ORFs are open (stop codons removed) except for 5 (MST1R, PTK7, JAK3, AXL, TIE1) which are closed (have stop codons). Detailed information can be found at: www.addgene.org/human_kinases Handling and Storage: Store glycerol stocks at -80oC and minimize freeze-thaw cycles. To access a plasmid, keep the plate on dry ice to prevent thawing. Using a sterile pipette tip, puncture the seal above an individual well and spread a portion of the glycerol stock onto an agar plate. To patch the hole, use sterile tape or a portion of a fresh aluminum seal. Note: These plasmid constructs are being distributed to non-profit institutions for the purpose of basic -
Cardiac Fibroblast P38 MAPK: a Critical Regulator of Myocardial Remodeling
Journal of Cardiovascular Development and Disease Review Cardiac Fibroblast p38 MAPK: A Critical Regulator of Myocardial Remodeling Neil A. Turner * and Nicola M. Blythe Discovery & Translational Science Department, Leeds Institute of Cardiovascular and Metabolic Medicine (LICAMM), School of Medicine, University of Leeds, Leeds LS2 9JT, UK * Correspondence: [email protected] Received: 23 July 2019; Accepted: 6 August 2019; Published: 7 August 2019 Abstract: The cardiac fibroblast is a remarkably versatile cell type that coordinates inflammatory, fibrotic and hypertrophic responses in the heart through a complex array of intracellular and intercellular signaling mechanisms. One important signaling node that has been identified involves p38 MAPK; a family of kinases activated in response to stress and inflammatory stimuli that modulates multiple aspects of cardiac fibroblast function, including inflammatory responses, myofibroblast differentiation, extracellular matrix turnover and the paracrine induction of cardiomyocyte hypertrophy. This review explores the emerging importance of the p38 MAPK pathway in cardiac fibroblasts, describes the molecular mechanisms by which it regulates the expression of key genes, and highlights its potential as a therapeutic target for reducing adverse myocardial remodeling. Keywords: cardiac remodeling; extracellular matrix; fibroblast; fibrosis; heart; hypertrophy; inflammation; myofibroblast; p38 MAP kinase; signal transduction; stress-activated protein kinase; transcription factor 1. Introduction Although once viewed as relatively passive players that solely regulate extracellular matrix (ECM) remodeling, cardiac fibroblasts are now acknowledged as being the primary nodal regulators of multiple aspects of cardiac function under both physiological and pathophysiological conditions [1–4]. In addition to modulating ECM turnover, cardiac fibroblasts contribute to cardiac inflammation, angiogenesis and cardiomyocyte hypertrophy, and hence are viewed as an important potential therapeutic target for ameliorating adverse cardiac remodeling [5]. -
Apoptosis Signal-Regulating Kinase 1 Promotes Ochratoxin A-Induced
OPEN Apoptosis Signal-regulating Kinase 1 SUBJECT AREAS: promotes Ochratoxin A-induced renal CELL BIOLOGY RISK FACTORS cytotoxicity Rui Liang1, Xiao Li Shen1,2, Boyang Zhang1, Yuzhe Li1, Wentao Xu1, Changhui Zhao3, YunBo Luo1 Received & Kunlun Huang1 10 November 2014 Accepted 1Laboratory of food safety and molecular biology, College of Food Science and Nutritional Engineering, China Agricultural 5 January 2015 University, Beijing 100083, P.R. China, 2School of Public Health, Zunyi Medical University, Zunyi, Guizhou 563003, P.R. China, 3Department of Nutrition and Food Science, University of Maryland, College Park, MD 20742, USA. Published 28 January 2015 Oxidative stress and apoptosis are involved in Ochratoxin A (OTA)-induced renal cytotoxicity. Apoptosis signal-regulating kinase 1 (ASK1) is a Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK, Correspondence and MAP3K) family member that plays an important role in oxidative stress-induced cell apoptosis. In this study, we performed RNA interference of ASK1 in HEK293 cells and employed an iTRAQ-based requests for materials quantitative proteomics approach to globally investigate the regulatory mechanism of ASK1 in should be addressed to OTA-induced renal cytotoxicity. Our results showed that ASK1 knockdown alleviated OTA-induced ROS W.X. (xuwentao@cau. generation and Dym loss and thus desensitized the cells to OTA-induced apoptosis. We identified 33 and 24 edu.cn) differentially expressed proteins upon OTA treatment in scrambled and ASK1 knockdown cells, respectively. Pathway classification and analysis revealed that ASK1 participated in OTA-induced inhibition of mRNA splicing, nucleotide metabolism, the cell cycle, DNA repair, and the activation of lipid metabolism. We concluded that ASK1 plays an essential role in promoting OTA-induced renal cytotoxicity. -
Overexpression of an Activated REL Mutant Enhances the Transformed State of the Human B-Lymphoma BJAB Cell Line and Alters Its Gene Expression Profile
Oncogene (2009) 28, 2100–2111 & 2009 Macmillan Publishers Limited All rights reserved 0950-9232/09 $32.00 www.nature.com/onc ORIGINAL ARTICLE Overexpression of an activated REL mutant enhances the transformed state of the human B-lymphoma BJAB cell line and alters its gene expression profile M Chin1, M Herscovitch1, N Zhang, DJ Waxman and TD Gilmore Department of Biology, Boston University, Boston, MA, USA The human REL proto-oncogene encodes a transcription factor. Misregulated REL is associated with B-cell factor in the nuclear factor (NF)-kB family. Overexpres- malignancies in several ways (Gilmore et al., sion of REL is acutely transforming in chicken lymphoid 2004). Overexpression of REL protein can transform cells, but has not been shown to transform any mammalian chicken lymphoid cells in vitro. Additionally, the lymphoid cell type. In this report, we show that over- REL locus is amplified in several types of human expression of a highly transforming mutant of REL B-cell lymphoma, including diffuse large B-cell lympho- (RELDTAD1) increases the oncogenic properties of the ma (DLBCL), follicular and primary mediastinal human B-cell lymphoma BJAB cell line, as shown by lymphomas. Moreover, REL mRNA is highly expressed increased colony formation in soft agar, tumor formation in de novo DLBCLs, and this elevated expression in SCID (severe combined immunodeficient) mice, and correlates with increased expression of many adhesion. BJAB-RELDTAD1 cells also show decreased putative REL target genes (Rhodes et al., 2005). activation of caspase in response to doxorubicin. BJAB- Nevertheless, REL has not been shown to be oncogenic RELDTAD1 cells have increased levels of active nuclear in any mammalian B-cell system, either in vitro REL protein as determined by immunofluorescence, or in vivo.