Macroevolutionary Bursts and Constraints Generate a Rainbow in a Clade of Tropical Birds Jon T
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TAG Operational Structure
PARROT TAXON ADVISORY GROUP (TAG) Regional Collection Plan 5th Edition 2020-2025 Sustainability of Parrot Populations in AZA Facilities ...................................................................... 1 Mission/Objectives/Strategies......................................................................................................... 2 TAG Operational Structure .............................................................................................................. 3 Steering Committee .................................................................................................................... 3 TAG Advisors ............................................................................................................................... 4 SSP Coordinators ......................................................................................................................... 5 Hot Topics: TAG Recommendations ................................................................................................ 8 Parrots as Ambassador Animals .................................................................................................. 9 Interactive Aviaries Housing Psittaciformes .............................................................................. 10 Private Aviculture ...................................................................................................................... 13 Communication ........................................................................................................................ -
Special Issue3.7 MB
Volume Eleven Conservation Science 2016 Western Australia Review and synthesis of knowledge of insular ecology, with emphasis on the islands of Western Australia IAN ABBOTT and ALLAN WILLS i TABLE OF CONTENTS Page ABSTRACT 1 INTRODUCTION 2 METHODS 17 Data sources 17 Personal knowledge 17 Assumptions 17 Nomenclatural conventions 17 PRELIMINARY 18 Concepts and definitions 18 Island nomenclature 18 Scope 20 INSULAR FEATURES AND THE ISLAND SYNDROME 20 Physical description 20 Biological description 23 Reduced species richness 23 Occurrence of endemic species or subspecies 23 Occurrence of unique ecosystems 27 Species characteristic of WA islands 27 Hyperabundance 30 Habitat changes 31 Behavioural changes 32 Morphological changes 33 Changes in niches 35 Genetic changes 35 CONCEPTUAL FRAMEWORK 36 Degree of exposure to wave action and salt spray 36 Normal exposure 36 Extreme exposure and tidal surge 40 Substrate 41 Topographic variation 42 Maximum elevation 43 Climate 44 Number and extent of vegetation and other types of habitat present 45 Degree of isolation from the nearest source area 49 History: Time since separation (or formation) 52 Planar area 54 Presence of breeding seals, seabirds, and turtles 59 Presence of Indigenous people 60 Activities of Europeans 63 Sampling completeness and comparability 81 Ecological interactions 83 Coups de foudres 94 LINKAGES BETWEEN THE 15 FACTORS 94 ii THE TRANSITION FROM MAINLAND TO ISLAND: KNOWNS; KNOWN UNKNOWNS; AND UNKNOWN UNKNOWNS 96 SPECIES TURNOVER 99 Landbird species 100 Seabird species 108 Waterbird -
Uneven Missing Data Skew Phylogenomic Relationships Within the Lories and Lorikeets
GBE Uneven Missing Data Skew Phylogenomic Relationships within the Lories and Lorikeets 1, 1,2 3 4 BrianTilstonSmith *, William M Mauck III , Brett W Benz ,andMichaelJAndersen 2021 August 26 on user History Natural of Museum American by https://academic.oup.com/gbe/article/12/7/1131/5848646 from Downloaded 1Department of Ornithology, American Museum of Natural History, New York, New York 2New York Genome Center, New York, New York 3Museum of Zoology and Department of Ecology and Evolutionary Biology, University of Michigan 4Department of Biology and Museum of Southwestern Biology, University of New Mexico *Corresponding author: E-mail: [email protected]. Accepted: 26 May 2020 Abstract The resolution of the Tree of Life has accelerated with advances in DNA sequencing technology. To achieve dense taxon sampling, it is often necessary to obtain DNA from historical museum specimens to supplement modern genetic samples. However, DNA from historical material is generally degraded, which presents various challenges. In this study, we evaluated how the coverage at variant sites and missing data among historical and modern samples impacts phylogenomic inference. We explored these patterns in the brush-tongued parrots (lories and lorikeets) of Australasia by sampling ultraconserved elements in 105 taxa. Trees estimated with low coverage characters had several clades where relationships appeared to be influenced by whether the sample came from historical or modern specimens, which were not observed when more stringent filtering was applied. To assess if the topologies were affected by missingdata,weperformedanoutlieranalysisofsitesandloci,andadatareductionapproachwhereweexcludedsitesbasedondata completeness. Depending on the outlier test, 0.15% of total sites or 38% of loci were driving the topological differences among trees, and at these sites, historical samples had 10.9Â more missing data than modern ones. -
Molecular Diagnostic Services Australia Wildlife Trade Operation
Attachment 1 Source Common Name scientific name Notes Captive bred Amazon - Blue fronted Amazona aestiva Captive bred Bristlebird - Eastern Dasyornis brachypterus Captive bred Caique - Black headed Pionites melanocephalus Captive bred Caique - Whie bellied Pionites leucogaster Captive bred Cockatiel Nymphicus hollandicus Captive bred Cockatoo - Sulphur crested Cacatua galerita Excludes EPBC listed sub species Captive bred Cockatoo - Black Glossy Calyptorhynchus lathami Calyptorhynchus lathami halmaturinus Captive bred Cockatoo - Galah Eolophus roseicapilla Captive bred Cockatoo - Gang Gang Callocephalon fimbriatum Captive bred Cockatoo - Major Mitchell Cacatua leadbeateri Captive bred Cockatoo - Umbrella Cacatua alba Conure - Black capped / Rock / Captive bred Sandia Pyrrhura rupicola Captive bred Conure - Golden Crown Aratinga aurea Conure - Green Cheeked / Captive bred Cinnamon / Lime / Yellowsided Pyrrhura molina Captive bred Conure - Jenday Arratinga solstitialis jandaya Captive bred Conure - Maroon Bellied Pyrrhura frontalis Captive bred Conure - Nanday Nandayus nenday Captive bred Conure - Pearly Pyrrhura lepida Captive bred Conure - Sun Aratinga solstitialis Captive bred Corella - Crimson winged Aprosmictus erythropterus Captive bred Corella - Little / Short-billed Cacatua sanguinea Corella - Long Billed / Muir / Captive bred Slender-billed Cacatua tenuirostris Captive bred Curlew - Bush Stone Burhinus grallarius Captive bred Dove - Rose Crowned Fruit Ptilinopus regina Captive bred Finch - Diamond Firetail Stagonopleura guttata -
Phylogenetic Relationships Within Parrots (Psittacidae) Inferred from Mitochondrial Cytochrome-B Gene Sequences
ZOOLOGICAL SCIENCE 23: 191–198 (2006) 2006 Zoological Society of Japan Phylogenetic Relationships Within Parrots (Psittacidae) Inferred from Mitochondrial Cytochrome-b Gene Sequences Dwi Astuti1,2*†, Noriko Azuma2, Hitoshi Suzuki2 and Seigo Higashi2 1Zoological Division, Research Center for Biology, Jl. Raya Jakarta-Bogor Km 46, Cibinong, 16911, PO. Box 25 Bogor, Indonesia 2Graduate School of Environmental Earth Science, Hokkaido University, Kitaku Kita 10 Nishi 5, Sapporo 060-0810, Japan Blood and tissue samples of 40 individuals including 27 parrot species (15 genera; 3 subfamilies) were collected in Indonesia. Their phylogenetic relationships were inferred from 907 bp of the mito- chondrial cytochrome-b gene, using the maximum-parsimony method, the maximum-likelihood method and the neighbor-joining method with Kimura two-parameter distance. The phylogenetic analysis revealed that (1) cockatoos (subfamily Cacatuinae) form a monophyletic sister group to other parrot groups; (2) within the genus Cacatua, C. goffini and C. sanguinea form a sister group to a clade containing other congeners; (3) subfamily Psittacinae emerged as paraphyletic, consist- ing of three clades, with a clade of Psittaculirostris grouping with subfamily Loriinae rather than with other Psittacinae; (4) lories and lorikeets (subfamily Loriinae) emerged as monophyletic, with Charmosyna placentis a basal sister group to other Loriinae, which comprised the subclades Lorius; Trichoglossus+Eos; and Chalcopsitta+Pseudeos. Key words: phylogeny, parrots, Psittacidae, mitochondrial, cytochrome-b chromosome (Christidist et al., 1991b) data suggested that INTRODUCTION cockatoos are distinct from lorikeets and other parrots, The bird group of parrots (Order Psittaciformes) com- which seem to be closely related to one another, del Hoyo prises approximately 350 species in 83 genera (Smith, et al. -
The Export and Re-Export of Cites-Listed Birds from the Solomon Islands
THE EXPORT AND RE-EXPORT OF CITES-LISTED BIRDS FROM THE SOLOMON ISLANDS Chris R. Shepherd Carrie J. Stengel Vincent Nijman A TRAFFIC SOUTHEAST ASIA REPORT Published by TRAFFIC Southeast Asia, Petaling Jaya, Selangor, Malaysia © 2012 TRAFFIC Southeast Asia All rights reserved. All material appearing in this publication is copyrighted and may be reproduced with permission. Any reproduction in full or in part of this publication must credit TRAFFIC Southeast Asia as the copyright owner. The views of the authors expressed in this publication do not necessarily reflect those of the TRAFFIC network, WWF or IUCN. The designations of geographical entities in this publication, and the presentation of the material, do not imply the expression of any opinion whatsoever on the part of TRAFFIC or its supporting organizations concerning the legal status of any country, territory, or area, or its authorities, or concerning the delimitation of its frontiers or boundaries. The TRAFFIC symbol copyright and Registered Trademark ownership is held by WWF. TRAFFIC is a joint programme of WWF and IUCN. Suggested citation: Shepherd, C.R., Stengel, C.J., and Nijman, V. (2012). The Export and Re- export of CITES-listed Birds from the Solomon Islands. TRAFFIC Southeast Asia, Petaling Jaya, Selangor, Malaysia. ISBN 978-983-3393-35-0 Cover: The Papuan Hornbill Rhyticeros plicatus is native to the Solomon Islands, and also found in Papua New Guinea and Indonesia, where many of the bird species featured in this report originate. Credit: © Brent Stirton/Getty Images/WWF The Export and Re-export of CITES-listed Birds from the Solomon Islands Chris R. -
Australia Comprehensive Target Species Custom Tour Trip Report
AUSTRALIA COMPREHENSIVE TARGET SPECIES CUSTOM TOUR TRIP REPORT 23 AUGUST – 1 OCTOBER 2019 By Andy Walker The Endangered (BirdLife International) Mallee Emu-wren has a tiny global range, and we had excellent views of a pair while birdwatching in Victoria. www.birdingecotours.com [email protected] 2 | TRIP REPORT Australia, Aug-Oct 2019 Overview This 40-day custom birdwatching tour of Australia commenced in Adelaide, South Australia, on the 23rd of August 2019 and ended in Sydney, New South Wales, on the 1st of October 2019. The tour also visited the states and territories of Victoria, Northern Territory, and Queensland. A pelagic trip was taken off southern South Australia (Port MacDonnell). Unfortunately a planned pelagic trip off southern Queensland (Southport) was canceled due to illness. This custom birding tour route was South Australia (Adelaide to Port MacDonnell) - Victoria (circuit around the western section of the state) - New South Wales (a brief stop for parrots along the state border) -Victoria (remainder of the western circuit back to Melbourne) - Northern Territory (Alice Springs area) - Northern Territory (Darwin to Kakadu and back) - Queensland (circuit out of Brisbane) - New South Wales (circuit out of Sydney). Several areas visited on this tour feature in our Australia set departure tours (e.g. East Coast and Northern Territory tours). A list of target birds was provided for the tour (the clients’ third trip to Australia), and these became the focus of the tour route and birding, though new trip birds encountered were also enjoyed! A total of 421 bird species were seen (plus 5 species heard only), including many client target birds. -
Resolving a Phylogenetic Hypothesis for Parrots: Implications from Systematics to Conservation
Emu - Austral Ornithology ISSN: 0158-4197 (Print) 1448-5540 (Online) Journal homepage: http://www.tandfonline.com/loi/temu20 Resolving a phylogenetic hypothesis for parrots: implications from systematics to conservation Kaiya L. Provost, Leo Joseph & Brian Tilston Smith To cite this article: Kaiya L. Provost, Leo Joseph & Brian Tilston Smith (2017): Resolving a phylogenetic hypothesis for parrots: implications from systematics to conservation, Emu - Austral Ornithology To link to this article: http://dx.doi.org/10.1080/01584197.2017.1387030 View supplementary material Published online: 01 Nov 2017. Submit your article to this journal Article views: 51 View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=temu20 Download by: [73.29.2.54] Date: 13 November 2017, At: 17:13 EMU - AUSTRAL ORNITHOLOGY, 2018 https://doi.org/10.1080/01584197.2017.1387030 REVIEW ARTICLE Resolving a phylogenetic hypothesis for parrots: implications from systematics to conservation Kaiya L. Provost a,b, Leo Joseph c and Brian Tilston Smithb aRichard Gilder Graduate School, American Museum of Natural History, New York, USA; bDepartment of Ornithology, American Museum of Natural History, New York, USA; cAustralian National Wildlife Collection, National Research Collections Australia, CSIRO, Canberra, Australia ABSTRACT ARTICLE HISTORY Advances in sequencing technology and phylogenetics have revolutionised avian biology by Received 27 April 2017 providing an evolutionary framework for studying natural groupings. In the parrots Accepted 21 September 2017 (Psittaciformes), DNA-based studies have led to a reclassification of clades, yet substantial gaps KEYWORDS remain in the data gleaned from genetic information. -
Open Season: an Analysis of the Pet Trade in Medan, Sumatra 1997 - 2001 I OPEN SEASON
OPEN SEASON: An analysis of the pet trade in Medan, Sumatra 1997 - 2001 Chris R. Shepherd Jeet Sukumaran Serge A.Wich A TRAFFIC SOUTHEAST ASIA REPORT Published by TRAFFIC Southeast Asia, Petaling Jaya, Selangor, Malaysia © 2004 TRAFFIC Southeast Asia All rights reserved. All material appearing in this publication is copyrighted and may be produced with permission. Any reproduction in full or in part of this publication must credit TRAFFIC Southeast Asia as the copyright owner. The views of the authors expressed in this publication do not necessarily reflect those of the TRAFFIC Network, WWF or IUCN. The designations of geographical entities in this publication, and the presentation of the material, do not imply the expression of any opinion whatsoever on the part of TRAFFIC or its supporting organizations concerning the legal status of any country, territory, or area, or its authorities, or concerning the delimitation of its frontiers or boundaries. The TRAFFIC symbol copyright and Registered Trademark ownership is held by WWF, TRAFFIC is a joint programme of WWF and IUCN. Layout by Noorainie Awang Anak, TRAFFIC Southeast Asia Suggested citation:Chris R. Shepherd, Jeet Sukumaran, Serge A. Wich (2004) Open Season:An analysis of the pet trade in Medan, Sumatra 1997 - 2001 TRAFFIC Southeast Asia ISBN 983-3393-02-0 Photograph credit (cover): Black-capped Lory Lorius lory, for sale in Medan, Sumatra (Chris R. Shepherd/TRAFIC Southeast Asia) Open Season: An analysis of the pet trade in Medan, Sumatra 1997 - 2001 i OPEN SEASON: An analysis of the pet trade in Medan, Sumatra 1997 - 2001 Chris R. Shepherd Jeet Sukumaran Serge A.Wich : Chris R. -
Ordinary Council Meeting Held on 17/02/2021
Kooloonbung Creek Flying-fox Camp Management Plan Final Adopted by Council June 2019 PORT MACQUARIE-HASTINGS COUNCIL ecology / vegetation / wildlife / aquatic ecology / GIS Acknowledgements Port Macquarie-Hastings Council would like to thank everyone who participated in community consultation, with all comments considered in the development of this plan and incorporated where possible. Council acknowledges input by the New South Wales Office of Environment and Heritage to the Plan in developing the template upon which this Camp Management Plan is based, and Dr Peggy Eby who provided advice which was included in the template. PR3995 Kooloonbung Creek Camp Management Plan ecosure.com.au | i Acronyms and abbreviations ABLV Australian bat lyssavirus BAM Biodiversity Assessment Method BC Act Biodiversity Conservation Act 2016 (NSW) BDAR Biodiversity Development Assessment Report BFF Black flying-fox (Pteropus alecto) the camp Kooloonbung Creek flying-fox camp CE Critically endangered Council Port Macquarie-Hastings Council DoEE Department of the Environment and Energy (Commonwealth) DPI Department of Primary Industries (NSW) E Endangered EEC Endangered Ecological Communities EP&A Act Environmental Planning and Assessment Act 1979 (NSW) EPA Environment Protection Authority EPBC Act Environment Protection and Biodiversity Conservation Act 1999 (Commonwealth) FKCNP Friends of Kooloonbung Creek Nature Park GHFF Grey-headed flying-fox (Pteropus poliocephalus) the Guideline Referral guideline for management actions in grey-headed and spectacled flying-fox -
Molecular Phylogenetics Suggests a New Guinean Origin and Frequent
Molecular Phylogenetics and Evolution 90 (2015) 34–48 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Molecular phylogenetics suggests a New Guinean origin and frequent episodes of founder-event speciation in the nectarivorous lories and lorikeets (Aves: Psittaciformes) q ⇑ Manuel Schweizer a, Timothy F. Wright b, Joshua V. Peñalba c, Erin E. Schirtzinger b, Leo Joseph d, a Naturhistorisches Museum der Burgergemeinde Bern, Bernastrasse 15, CH 3005 Bern, Switzerland b Department of Biology, MSC 3AF, New Mexico State University, Las Cruces, NM 88003, USA c Research School of Biology, Australian National University, Building 116, Acton, Australian Capital Territory 0200, Australia d Australian National Wildlife Collection, National Research Collections Australia, CSIRO, Australian Capital Territory 2601, Australia article info abstract Article history: The lories and lorikeets (Aves: Loriinae: Loriini) are a readily recognizable, discrete group of nectarivo- Received 19 January 2015 rous parrots confined to the Indo-Pacific region between Wallace’s Line and the Pitcairn Island group Revised 1 April 2015 in the central-east Pacific Ocean. We present the first phylogenetic analysis of all currently recognized Accepted 12 April 2015 genera in the group using two mitochondrial and five nuclear loci. Our analyses suggest a New Available online 28 April 2015 Guinean origin for the group at about 10 million years ago (95% HPD 4.8–14.8) but this origin must be interpreted within the context of that island’s complicated, recent geological history. That is, the origin Keywords: and early diversification of the group may have taken place as New Guinea’s Central Cordillera arose Lories and the final constituent terranes that form present-day New Guinea were accreted. -
Changes from the WA Checklist 2014 (Updated April 2015)
Changes from the WA Checklist 2014 (updated April 2015) Reptiles and frogs (compiled by P. Doughty, R. Ellis and R. Bray) Revision of species boundaries in Uperoleia. A summary paper of recent genetic work on Uperoleia toadlets redrew several species’ ranges. One result was the discovery that U. inundata occurs widely in the Kimberley, but is difficult to distinguish from U. crassa and U. borealis. This species is now added to the WA frog checklist. Catullo, R.A. and Keogh, J.S. (2014). Aridification drove repeated episodes of diversification between Australian biomes: Evidence from a multi-locus phylogeny of Australian toadlets (Uperoleia: Myobatrachidae). Molecular Phylogenetics and Evolution 79: 106–117. Revision of the Diplodactylus conspicillatus species complex. Oliver et al. (2014) undertook an analysis of this widely-distributed ‘species’ across the Australian arid zone and monsoonal tropics. Using molecular and morphological data, they found evidence for seven species-level lineages. Four species occur in WA: D. conspicillatus, D. laevis (resurrected from synonymy and widely sympatric with D. conspicillatus), D. bilybara sp. nov. (western Pilbara and Carnarvon regions) and D. custos sp. nov. (Kimberley). Oliver, P.M., Couper, P.J. and Pepper, M. (2014). Independent transitions between monsoonal and arid biomes revealed by systematic revision of a complex of Australian geckos (Diplodactylus; Diplodactylidae). PloS ONE 9(12): e111895. New species of Oedura from the Kimberley. A distinctive new species of Oedura, O. murramanu, was discovered from the Oscar Ranges in the Kimberley. It is most similar to O. filicipoda but differs in tail shape and other characters and occurs 150 km to the south of that species.