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Use of Organelle Markers to Study Genetic Diversity in Soybean
Chapter 26 Use of Organelle Markers to Study Genetic Diversity in Soybean Lidia Skuza, Ewa Filip and Izabela Szućko Additional information is available at the end of the chapter http://dx.doi.org/10.5772/52028 1. Introduction Soybean is the most important crop provider of proteins and oil used in animal nutrition and for human consumption. Plant breeders continue to release improved cultivars with en‐ hanced yield, disease resistance, and quality traits. It is also the most planted genetically modified crop. The narrow genetic base of current soybean cultivars may lack sufficient al‐ lelic diversity to counteract vulnerability to shifts in environmental variables. An investiga‐ tion of genetic relatedness at a broad level may provide important information about the historical relationship among different genotypes. Such types of study are possible thanks to different markers application, based on variation of organelle DNA (mtDNA or cpDNA). 2. Mitochondrial genome 2.1. Genomes as markers Typically, all sufficiently variable DNA regions can be used in genetic studies of popula‐ tions and in interspecific studies. Because of in seed plants chloroplasts and mitochondria are mainly inherited uniparentally, organelle genomes are often used because they carry more information than nuclear markers, which are inherited biparentally. The main benefit is that there is only one allele per cell and per organism, and, consequently, no recombina‐ tion between two alleles can occur. With different dispersal distances, genomes inherited bi‐ parentally, maternally and paternally, also reveal significant differences in their genetic variability among populations. In particular, maternally inherited markers show diversity within a population much better [1]. -
National Parks Contents
Whitsunday National Parks Contents Parks at a glance ...................................................................... 2 Lindeman Islands National Park .............................................. 16 Welcome ................................................................................... 3 Conway National Park ............................................................. 18 Be inspired ............................................................................... 3 Other top spots ...................................................................... 22 Map of the Whitsundays ........................................................... 4 Boating in the Whitsundays .................................................... 24 Plan your getaway ..................................................................... 6 Journey wisely—Be careful. Be responsible ............................. 26 Choose your adventure ............................................................. 8 Know your limits—track and trail classifications ...................... 27 Whitsunday Islands National Park ............................................. 9 Connect with Queensland National Parks ................................ 28 Whitsunday Ngaro Sea Trail .....................................................12 Table of facilities and activities .........see pages 11, 13, 17 and 23 Molle Islands National Park .................................................... 13 Parks at a glance Wheelchair access Camping Toilets Day-use area Lookout Public mooring Anchorage Swimming -
Indigenous Cultural Heritage Investigation Shute Harbour Marina Development Project Shute Bay, Whitsunday Shire
1 INDIGENOUS CULTURAL HERITAGE INVESTIGATION SHUTE HARBOUR MARINA DEVELOPMENT PROJECT SHUTE BAY, WHITSUNDAY SHIRE MARCH 2008 Prepared by Michele Bird Northern Archaeology Consultancies Pty Ltd PO Box 118 Castletown, Hyde Park QLD 4812 In Conjunction with GIA AND NGARO/GIA ABORIGINAL PARTIES For SHUTE HARBOUR MARINA DEVELOPMENT PTY LTD 292 Water Street Spring Hill QLD 4006 2 TABLE OF CONTENTS 1. INTRODUCTION 1 1.1 Terms of Reference 2 2. PROJECT LOCATION AND DESCRIPTION 4 3. CULTURAL HERITAGE LEGISLATION 7 4. TRADITIONAL OWNER CONSULTATION 15 4.1 Identification of Aboriginal Parties 15 4.2 Consultative Framework 16 5. ENVIRONMENTAL BACKGROUND 19 6. HISTORICAL AND ARCHAEOLOGICAL BACKGROUND 24 6.1 Pre- and Post-Contact History 24 6.2 Cultural Heritage Register and Database Searches 30 6.3 Previous Archaeological Research 32 6.4 Aboriginal Oral History 40 7. CULTURAL FIELDWORK: METHODS AND RESULTS 42 8. ABORIGINAL CULTURAL VALUES OF THE PROJECT AREA 47 8.1 Feedback from Aboriginal Stakeholders 47 8.2 Identified Aboriginal Cultural Values 50 9. ASSESSMENT OF POTENTIAL CULTURAL HERITAGE IMPACTS 53 10. PROJECT RECOMMENDATIONS 57 10.1 Cultural and Environmental Aspects 57 10.2 Cultural Aspirations and Other Issues 61 11. REFERENCES 63 3 FIGURES 1. Cadastral map showing the Shute Harbour Marina project area. 2. Concept master plan showing the Shute Harbour Marina project. PLATES Front Cover: View across Shute Bay from Shute Harbour Road. 1. Gia Aboriginal Party. 2. Ngaro/Gia Aboriginal Party. 3. Coastal fringe between Shute Harbour Road and Shute Bay. 4. Coastal fringe between Shute Harbour Road and Shute Bay. 5. Fringing mangroves along Shute Bay intertidal zone. -
BCSA Aug 05 21
BUTTERFLY CONSERVATION SA Inc. NEWSLETTER No. 21: August, 2005. SURVEY OF THE DALHOUSIE SPRINGS AREA Inside this issue: • BCSA Chairman Roger Grund made a trip to the Dalhousie Survey of the Dalhousie Springs area Springs area in the Far North Region of South Australia during (Roger Grund) the period 21-28 September 2004, to survey for butterflies in an • Excursions area that has not received historical attention from lepidopterists. • Field and other Notes (Andy Young) The weather was good with temperatures in the 30's to high 20's • Butterfly Campaign degrees centigrade. It was intended to be a much longer and update broader survey but was curtailed by a medical emergency. The • Grant success • email area had received some good early-winter rains and so it was • thought there would be a good chance of a floral blooming and New Members • Diary dates along with it a good flight of butterflies, even though the rainfall (Continued on page 2) Fig 1 Fig 3 Fig 4 Fig 5 Fig 6 and 7 Fig 8 Fig 9 Fig 2 Fig 10 BUTTERFLY CONSERVATION SA Inc. for membership enquiries and annual membership payments ($10): Treasurer, 13/4 Randolph Avenue, PARKSIDE. 5063 BUTTERFLY CONSERVATION SA Inc. NEWSLETTER August, 2005 Issue 21 Page 2 was poor during July and August. In fact, it was found the area was already in the mid stages of drying out by the time the survey was undertaken and the local butterfly fauna was very active and often very ragged. The country is mainly gibber plain (Fig. 1) and breakaway but some nice vegetated red dune habitat is present just to the south of Hamilton and again to the northeast of Mt Dare near the Finke River. -
Phylogenetic Relationships and Historical Biogeography of Tribes and Genera in the Subfamily Nymphalinae (Lepidoptera: Nymphalidae)
Blackwell Science, LtdOxford, UKBIJBiological Journal of the Linnean Society 0024-4066The Linnean Society of London, 2005? 2005 862 227251 Original Article PHYLOGENY OF NYMPHALINAE N. WAHLBERG ET AL Biological Journal of the Linnean Society, 2005, 86, 227–251. With 5 figures . Phylogenetic relationships and historical biogeography of tribes and genera in the subfamily Nymphalinae (Lepidoptera: Nymphalidae) NIKLAS WAHLBERG1*, ANDREW V. Z. BROWER2 and SÖREN NYLIN1 1Department of Zoology, Stockholm University, S-106 91 Stockholm, Sweden 2Department of Zoology, Oregon State University, Corvallis, Oregon 97331–2907, USA Received 10 January 2004; accepted for publication 12 November 2004 We infer for the first time the phylogenetic relationships of genera and tribes in the ecologically and evolutionarily well-studied subfamily Nymphalinae using DNA sequence data from three genes: 1450 bp of cytochrome oxidase subunit I (COI) (in the mitochondrial genome), 1077 bp of elongation factor 1-alpha (EF1-a) and 400–403 bp of wing- less (both in the nuclear genome). We explore the influence of each gene region on the support given to each node of the most parsimonious tree derived from a combined analysis of all three genes using Partitioned Bremer Support. We also explore the influence of assuming equal weights for all characters in the combined analysis by investigating the stability of clades to different transition/transversion weighting schemes. We find many strongly supported and stable clades in the Nymphalinae. We are also able to identify ‘rogue’ -
BCSA May 05 20
BUTTERFLY CONSERVATION SA Inc. NEWSLETTER No. 20: May, 2005. The value of Stinging Nettles! Inside this issue: • The value of Stinging nettles! The larvae of one of our most attractive butterflies The Australian • Profile: Lee Heard Admiral Vanessa itea has a fondness for one of our most notorious • Five years of Pollard weeds, the stinging nettle. walk Butterfly Monitoring This butterfly is mostly confined to Australia, but has managed to • Report by Andy Young disperse itself on upwelling westerly winds to the islands east of projects on KI Australia, including New Zealand where this butterfly was first • Notices—AGM documented by European naturalists. It has the interesting habit of Fees now due resting head downwards with wings open (usually) on vertical walls of Excursions buildings, fences, tree trunks, rock faces, etc. It will also slowly open Newsletter by Email? and close its wings while remaining in this position, which usually • Plant sale indicates it is aware of your presence. • New Members • Diary dates Description Wingspan: males and females: 50mm. Upperside: Both sexes look very much alike with black, yellow and orange-brown colours. The yellow is in a band across the forewing, there are a series of blue-centred black dots on the bottom of the hind wing. Underside: The forewing is similar to the upperside but the background colour is grey, and there is a blue ring near the leading edge. The hind wing ground colour is brownish-black mottled with grey. Continued page 2 Class: Insecta Order: Lepidoptera Family: Nymphalidae Genus: Vanessa Species: itea All photos: RHFisher (Continued on page 2) BUTTERFLY CONSERVATION SA Inc. -
Jervis Bay Territory Page 1 of 50 21-Jan-11 Species List for NRM Region (Blank), Jervis Bay Territory
Biodiversity Summary for NRM Regions Species List What is the summary for and where does it come from? This list has been produced by the Department of Sustainability, Environment, Water, Population and Communities (SEWPC) for the Natural Resource Management Spatial Information System. The list was produced using the AustralianAustralian Natural Natural Heritage Heritage Assessment Assessment Tool Tool (ANHAT), which analyses data from a range of plant and animal surveys and collections from across Australia to automatically generate a report for each NRM region. Data sources (Appendix 2) include national and state herbaria, museums, state governments, CSIRO, Birds Australia and a range of surveys conducted by or for DEWHA. For each family of plant and animal covered by ANHAT (Appendix 1), this document gives the number of species in the country and how many of them are found in the region. It also identifies species listed as Vulnerable, Critically Endangered, Endangered or Conservation Dependent under the EPBC Act. A biodiversity summary for this region is also available. For more information please see: www.environment.gov.au/heritage/anhat/index.html Limitations • ANHAT currently contains information on the distribution of over 30,000 Australian taxa. This includes all mammals, birds, reptiles, frogs and fish, 137 families of vascular plants (over 15,000 species) and a range of invertebrate groups. Groups notnot yet yet covered covered in inANHAT ANHAT are notnot included included in in the the list. list. • The data used come from authoritative sources, but they are not perfect. All species names have been confirmed as valid species names, but it is not possible to confirm all species locations. -
Southern Gulf, Queensland
Biodiversity Summary for NRM Regions Species List What is the summary for and where does it come from? This list has been produced by the Department of Sustainability, Environment, Water, Population and Communities (SEWPC) for the Natural Resource Management Spatial Information System. The list was produced using the AustralianAustralian Natural Natural Heritage Heritage Assessment Assessment Tool Tool (ANHAT), which analyses data from a range of plant and animal surveys and collections from across Australia to automatically generate a report for each NRM region. Data sources (Appendix 2) include national and state herbaria, museums, state governments, CSIRO, Birds Australia and a range of surveys conducted by or for DEWHA. For each family of plant and animal covered by ANHAT (Appendix 1), this document gives the number of species in the country and how many of them are found in the region. It also identifies species listed as Vulnerable, Critically Endangered, Endangered or Conservation Dependent under the EPBC Act. A biodiversity summary for this region is also available. For more information please see: www.environment.gov.au/heritage/anhat/index.html Limitations • ANHAT currently contains information on the distribution of over 30,000 Australian taxa. This includes all mammals, birds, reptiles, frogs and fish, 137 families of vascular plants (over 15,000 species) and a range of invertebrate groups. Groups notnot yet yet covered covered in inANHAT ANHAT are notnot included included in in the the list. list. • The data used come from authoritative sources, but they are not perfect. All species names have been confirmed as valid species names, but it is not possible to confirm all species locations. -
The Radiation of Satyrini Butterflies (Nymphalidae: Satyrinae): A
Zoological Journal of the Linnean Society, 2011, 161, 64–87. With 8 figures The radiation of Satyrini butterflies (Nymphalidae: Satyrinae): a challenge for phylogenetic methods CARLOS PEÑA1,2*, SÖREN NYLIN1 and NIKLAS WAHLBERG1,3 1Department of Zoology, Stockholm University, 106 91 Stockholm, Sweden 2Museo de Historia Natural, Universidad Nacional Mayor de San Marcos, Av. Arenales 1256, Apartado 14-0434, Lima-14, Peru 3Laboratory of Genetics, Department of Biology, University of Turku, 20014 Turku, Finland Received 24 February 2009; accepted for publication 1 September 2009 We have inferred the most comprehensive phylogenetic hypothesis to date of butterflies in the tribe Satyrini. In order to obtain a hypothesis of relationships, we used maximum parsimony and model-based methods with 4435 bp of DNA sequences from mitochondrial and nuclear genes for 179 taxa (130 genera and eight out-groups). We estimated dates of origin and diversification for major clades, and performed a biogeographic analysis using a dispersal–vicariance framework, in order to infer a scenario of the biogeographical history of the group. We found long-branch taxa that affected the accuracy of all three methods. Moreover, different methods produced incongruent phylogenies. We found that Satyrini appeared around 42 Mya in either the Neotropical or the Eastern Palaearctic, Oriental, and/or Indo-Australian regions, and underwent a quick radiation between 32 and 24 Mya, during which time most of its component subtribes originated. Several factors might have been important for the diversification of Satyrini: the ability to feed on grasses; early habitat shift into open, non-forest habitats; and geographic bridges, which permitted dispersal over marine barriers, enabling the geographic expansions of ancestors to new environ- ments that provided opportunities for geographic differentiation, and diversification. -
Shoalwater and Corio Bays Area Ramsar Site Ecological Character Description
Shoalwater and Corio Bays Area Ramsar Site Ecological Character Description 2010 Disclaimer While reasonable efforts have been made to ensure the contents of this ECD are correct, the Commonwealth of Australia as represented by the Department of the Environment does not guarantee and accepts no legal liability whatsoever arising from or connected to the currency, accuracy, completeness, reliability or suitability of the information in this ECD. Note: There may be differences in the type of information contained in this ECD publication, to those of other Ramsar wetlands. © Copyright Commonwealth of Australia, 2010. The ‘Ecological Character Description for the Shoalwater and Corio Bays Area Ramsar Site: Final Report’ is licensed by the Commonwealth of Australia for use under a Creative Commons Attribution 4.0 Australia licence with the exception of the Coat of Arms of the Commonwealth of Australia, the logo of the agency responsible for publishing the report, content supplied by third parties, and any images depicting people. For licence conditions see: https://creativecommons.org/licenses/by/4.0/ This report should be attributed as ‘BMT WBM. (2010). Ecological Character Description of the Shoalwater and Corio Bays Area Ramsar Site. Prepared for the Department of the Environment, Water, Heritage and the Arts.’ The Commonwealth of Australia has made all reasonable efforts to identify content supplied by third parties using the following format ‘© Copyright, [name of third party] ’. Ecological Character Description for the Shoalwater and -
Catalogue of Protozoan Parasites Recorded in Australia Peter J. O
1 CATALOGUE OF PROTOZOAN PARASITES RECORDED IN AUSTRALIA PETER J. O’DONOGHUE & ROBERT D. ADLARD O’Donoghue, P.J. & Adlard, R.D. 2000 02 29: Catalogue of protozoan parasites recorded in Australia. Memoirs of the Queensland Museum 45(1):1-164. Brisbane. ISSN 0079-8835. Published reports of protozoan species from Australian animals have been compiled into a host- parasite checklist, a parasite-host checklist and a cross-referenced bibliography. Protozoa listed include parasites, commensals and symbionts but free-living species have been excluded. Over 590 protozoan species are listed including amoebae, flagellates, ciliates and ‘sporozoa’ (the latter comprising apicomplexans, microsporans, myxozoans, haplosporidians and paramyxeans). Organisms are recorded in association with some 520 hosts including mammals, marsupials, birds, reptiles, amphibians, fish and invertebrates. Information has been abstracted from over 1,270 scientific publications predating 1999 and all records include taxonomic authorities, synonyms, common names, sites of infection within hosts and geographic locations. Protozoa, parasite checklist, host checklist, bibliography, Australia. Peter J. O’Donoghue, Department of Microbiology and Parasitology, The University of Queensland, St Lucia 4072, Australia; Robert D. Adlard, Protozoa Section, Queensland Museum, PO Box 3300, South Brisbane 4101, Australia; 31 January 2000. CONTENTS the literature for reports relevant to contemporary studies. Such problems could be avoided if all previous HOST-PARASITE CHECKLIST 5 records were consolidated into a single database. Most Mammals 5 researchers currently avail themselves of various Reptiles 21 electronic database and abstracting services but none Amphibians 26 include literature published earlier than 1985 and not all Birds 34 journal titles are covered in their databases. Fish 44 Invertebrates 54 Several catalogues of parasites in Australian PARASITE-HOST CHECKLIST 63 hosts have previously been published. -
Lepidoptera, Lycaenidae)
A peer-reviewed open-access journal ZooKeys 115:On 53–84 Hypolycaena (2011) from Maluku, Indonesia, including the first description of male... 53 doi: 10.3897/zookeys.115.1406 RESEARCH ARTICLE www.zookeys.org Launched to accelerate biodiversity research On Hypolycaena from Maluku, Indonesia, including the first description of male Hypolycaena asahi (Lepidoptera, Lycaenidae) Alan Cassidy1, Andrew Rawlins2 1 18 Woodhurst Road, Maidenhead, Berkshire, SL6 8TF, England 2 392 Maidstone Road, Rainham, Kent, ME8 0JA, England Corresponding author: Alan Cassidy ([email protected]) Academic editor: Niklas Wahlberg | Received 8 April 2011 | Accepted 25 May 2011 | Published 5 July 2011 Citation: Cassidy A, Rawlins A (2011) On Hypolycaena from Maluku, Indonesia, including the first description of male Hypolycaena asahi (Lepidoptera, Lycaenidae). ZooKeys 115: 53–84. doi: 10.3897/zookeys.115.1406 Abstract The taxonomy and distribution of the five species of Hypolycaena in Maluku are discussed and new locality records given. Corrections are made to the published taxonomy and distribution of H. phorbas (Fabricius, 1793). This clarification enables a better understanding of the biogeography of the genus. Hypolycaena asahi Okubo, 2007, was originally described from a single female from Ambon and is here recorded from Seram. The male is described for the first time. Keywords Hypolycaena, asahi, danis, dictaea, erylus, phorbas, pigres, silo, sipylus, Indonesia, Maluku, Lepidoptera, Lycaenidae Introduction The Indonesian provinces of North Maluku and Maluku consist of numerous islands, yet their butterfly fauna remains less well described than those of the principal sur- rounding areas of the Philippines, Sulawesi and New Guinea. Vane-Wright and Peggie (1994) comment that, geologically, the northern islands of Halmahera, Ternate, Mo- rotai and Bacan form a complex of land areas variously related to New Guinea, while the Buru, Ambon, Seram arc is related to North-West Australia.