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Disease List for Aquaculture Health Certificate
Quarantine Standard for Designated Species of Imported/Exported Aquatic Animals [Attached Table] 4. Listed Diseases & Quarantine Standard for Designated Species Listed disease designated species standard Common name Disease Pathogen 1. Epizootic haematopoietic Epizootic Perca fluviatilis Redfin perch necrosis(EHN) haematopoietic Oncorhynchus mykiss Rainbow trout necrosis virus(EHNV) Macquaria australasica Macquarie perch Bidyanus bidyanus Silver perch Gambusia affinis Mosquito fish Galaxias olidus Mountain galaxias Negative Maccullochella peelii Murray cod Salmo salar Atlantic salmon Ameirus melas Black bullhead Esox lucius Pike 2. Spring viraemia of Spring viraemia of Cyprinus carpio Common carp carp, (SVC) carp virus(SVCV) Grass carp, Ctenopharyngodon idella white amur Hypophthalmichthys molitrix Silver carp Hypophthalmichthys nobilis Bighead carp Carassius carassius Crucian carp Carassius auratus Goldfish Tinca tinca Tench Sheatfish, Silurus glanis European catfish, wels Negative Leuciscus idus Orfe Rutilus rutilus Roach Danio rerio Zebrafish Esox lucius Northern pike Poecilia reticulata Guppy Lepomis gibbosus Pumpkinseed Oncorhynchus mykiss Rainbow trout Abramis brama Freshwater bream Notemigonus cysoleucas Golden shiner 3.Viral haemorrhagic Viral haemorrhagic Oncorhynchus spp. Pacific salmon septicaemia(VHS) septicaemia Oncorhynchus mykiss Rainbow trout virus(VHSV) Gadus macrocephalus Pacific cod Aulorhynchus flavidus Tubesnout Cymatogaster aggregata Shiner perch Ammodytes hexapterus Pacific sandlance Merluccius productus Pacific -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Individual Variation in Rod Absorbance Spectra Correlated with Opsin Gene Polymorphism in Sand Goby (Pomatoschistus Minutus)
3415 The Journal of Experimental Biology 212, 3415-3421 Published by The Company of Biologists 2009 doi:10.1242/jeb.031344 Individual variation in rod absorbance spectra correlated with opsin gene polymorphism in sand goby (Pomatoschistus minutus) Mirka Jokela-Määttä1,*, Annika Vartio1, Lars Paulin2 and Kristian Donner1 1Department of Biological and Environmental Sciences and 2Institute of Biotechnology, University of Helsinki, Helsinki, Finland *Author for correspondence ([email protected]) Accepted 28 July 2009 SUMMARY Rod absorbance spectra, characterized by the wavelength of peak absorbance (max) were related to the rod opsin sequences of individual sand gobies (Pomatoschistus minutus) from four allopatric populations [Adriatic Sea (A), English Channel (E), Swedish West Coast (S) and Baltic Sea (B)]. Rod max differed between populations in a manner correlated with differences in the spectral light transmission of the respective water bodies [max: (A)Ϸ503 nm; (E and S)Ϸ505–506 nm; (B)Ϸ508 nm]. A distinguishing feature of B was the wide within-population variation of max (505.6–511.3 nm). The rod opsin gene was sequenced in marked individuals whose rod absorbance spectra had been accurately measured. Substitutions were identified using EMBL/GenBank X62405 English sand goby sequence as reference and interpreted using two related rod pigments, the spectrally similar one of the Adriatic P. marmoratus (maxϷ507 nm) and the relatively red-shifted Baltic P. microps (maxϷ515 nm) as outgroups. The opsin sequence of all E individuals was identical to that of the reference, whereas the S and B fish all had the substitution N151N/T or N151T. The B fish showed systematic within-population polymorphism, the sequence of individuals with max at 505.6–507.5 nm were identical to S, but those with max at 509–511.3 nm additionally had F261F/Y. -
Patterns of Evolution in Gobies (Teleostei: Gobiidae): a Multi-Scale Phylogenetic Investigation
PATTERNS OF EVOLUTION IN GOBIES (TELEOSTEI: GOBIIDAE): A MULTI-SCALE PHYLOGENETIC INVESTIGATION A Dissertation by LUKE MICHAEL TORNABENE BS, Hofstra University, 2007 MS, Texas A&M University-Corpus Christi, 2010 Submitted in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY in MARINE BIOLOGY Texas A&M University-Corpus Christi Corpus Christi, Texas December 2014 © Luke Michael Tornabene All Rights Reserved December 2014 PATTERNS OF EVOLUTION IN GOBIES (TELEOSTEI: GOBIIDAE): A MULTI-SCALE PHYLOGENETIC INVESTIGATION A Dissertation by LUKE MICHAEL TORNABENE This dissertation meets the standards for scope and quality of Texas A&M University-Corpus Christi and is hereby approved. Frank L. Pezold, PhD Chris Bird, PhD Chair Committee Member Kevin W. Conway, PhD James D. Hogan, PhD Committee Member Committee Member Lea-Der Chen, PhD Graduate Faculty Representative December 2014 ABSTRACT The family of fishes commonly known as gobies (Teleostei: Gobiidae) is one of the most diverse lineages of vertebrates in the world. With more than 1700 species of gobies spread among more than 200 genera, gobies are the most species-rich family of marine fishes. Gobies can be found in nearly every aquatic habitat on earth, and are often the most diverse and numerically abundant fishes in tropical and subtropical habitats, especially coral reefs. Their remarkable taxonomic, morphological and ecological diversity make them an ideal model group for studying the processes driving taxonomic and phenotypic diversification in aquatic vertebrates. Unfortunately the phylogenetic relationships of many groups of gobies are poorly resolved, obscuring our understanding of the evolution of their ecological diversity. This dissertation is a multi-scale phylogenetic study that aims to clarify phylogenetic relationships across the Gobiidae and demonstrate the utility of this family for studies of macroevolution and speciation at multiple evolutionary timescales. -
Sand Goby—An Ecologically Relevant Species for Behavioural Ecotoxicology
fishes Article Sand Goby—An Ecologically Relevant Species for Behavioural Ecotoxicology Davide Asnicar 1,2, Giedre˙ Ašmonaite˙ 2 ID , Lina Birgersson 2, Charlotta Kvarnemo 2,3 ID , Ola Svensson 2,3,4 ID and Joachim Sturve 2,* 1 Department of Biology, University of Padova, 35131 Padova, Italy; [email protected] 2 Department of Biological and Environmental Sciences, University of Gothenburg, Box 463, SE-405 30 Göteborg, Sweden; [email protected] (G.A.); [email protected] (L.B.); [email protected] (C.K.); [email protected] (O.S.) 3 The Linnaeus Centre for Marine Evolutionary Biology, University of Gothenburg, SE-405 30 Gothenburg, Sweden 4 School of Natural Sciences, Technology and Environmental Studies, Södertörn University, SE-141 89 Huddinge, Sweden * Correspondence: [email protected]; Tel.: +46-317-863-688 Received: 30 December 2017; Accepted: 14 February 2018; Published: 20 February 2018 Abstract: Locomotion-based behavioural endpoints have been suggested as suitable sublethal endpoints for human and environmental hazard assessment, as well as for biomonitoring applications. Larval stages of the sand goby (Pomatoschistus minutus) possess a number of attractive qualities for experimental testing that make it a promising species in behavioural ecotoxicology. Here, we present a study aimed at developing a toolkit for using the sand goby as novel species for ecotoxicological studies and using locomotion as an alternative endpoint in toxicity testing. Exposure to three contaminants (copper (Cu), di-butyl phthalate (DBP) and perfluorooctanoic acid (PFOA) was tested in the early life stages of the sand goby and the locomotion patterns of the larvae were quantified using an automatic tracking system. -
Training Manual Series No.15/2018
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by CMFRI Digital Repository DBTR-H D Indian Council of Agricultural Research Ministry of Science and Technology Central Marine Fisheries Research Institute Department of Biotechnology CMFRI Training Manual Series No.15/2018 Training Manual In the frame work of the project: DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals 2015-18 Training Manual In the frame work of the project: DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals 2015-18 Training Manual This is a limited edition of the CMFRI Training Manual provided to participants of the “DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals” organized by the Marine Biotechnology Division of Central Marine Fisheries Research Institute (CMFRI), from 2nd February 2015 - 31st March 2018. Principal Investigator Dr. P. Vijayagopal Compiled & Edited by Dr. P. Vijayagopal Dr. Reynold Peter Assisted by Aditya Prabhakar Swetha Dhamodharan P V ISBN 978-93-82263-24-1 CMFRI Training Manual Series No.15/2018 Published by Dr A Gopalakrishnan Director, Central Marine Fisheries Research Institute (ICAR-CMFRI) Central Marine Fisheries Research Institute PB.No:1603, Ernakulam North P.O, Kochi-682018, India. 2 Foreword Central Marine Fisheries Research Institute (CMFRI), Kochi along with CIFE, Mumbai and CIFA, Bhubaneswar within the Indian Council of Agricultural Research (ICAR) and Department of Biotechnology of Government of India organized a series of training programs entitled “DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals”. -
The Round Goby Genome Provides Insights Into Mechanisms That May Facilitate Biological Invasions
Adrian-Kalchhauser et al. BMC Biology (2020) 18:11 https://doi.org/10.1186/s12915-019-0731-8 RESEARCH ARTICLE Open Access The round goby genome provides insights into mechanisms that may facilitate biological invasions Irene Adrian-Kalchhauser1,2* , Anders Blomberg3†, Tomas Larsson4†, Zuzana Musilova5†, Claire R. Peart6†, Martin Pippel7†, Monica Hongroe Solbakken8†, Jaanus Suurväli9†, Jean-Claude Walser10†, Joanna Yvonne Wilson11†, Magnus Alm Rosenblad3,12†, Demian Burguera5†, Silvia Gutnik13†, Nico Michiels14†, Mats Töpel2†, Kirill Pankov11†, Siegfried Schloissnig15† and Sylke Winkler7† Abstract Background: Theinvasivebenthicroundgoby(Neogobius melanostomus) is the most successful temperate invasive fish and has spread in aquatic ecosystems on both sides of the Atlantic. Invasive species constitute powerful in situ experimental systems to study fast adaptation and directional selection on short ecological timescales and present promising case studies to understand factors involved the impressive ability of some species to colonize novel environments. We seize the unique opportunity presented by the round goby invasion to study genomic substrates potentially involved in colonization success. Results: We report a highly contiguous long-read-based genome and analyze gene families that we hypothesize to relate to the ability of these fish to deal with novel environments. The analyses provide novel insights from the large evolutionary scale to the small species-specific scale. We describe expansions in specific cytochromeP450enzymes,aremarkablydiverse innate immune system, an ancient duplication in red light vision accompanied by red skin fluorescence, evolutionary patterns of epigenetic regulators, and the presence of osmoregulatory genes that may have contributed to the round goby’s capacity to invade cold and salty waters. A recurring theme across all analyzed gene families is gene expansions. -
The Skin of Fish As a Transport Epithelium: a Review
J Comp Physiol B DOI 10.1007/s00360-013-0761-4 REVIEW The skin of fish as a transport epithelium: a review Chris N. Glover • Carol Bucking • Chris M. Wood Received: 28 February 2013 / Accepted: 23 April 2013 Ó Springer-Verlag Berlin Heidelberg 2013 Abstract The primary function of fish skin is to act as a Introduction barrier. It provides protection against physical damage and assists with the maintenance of homoeostasis by minimis- The epidermal surfaces of animals play an integral role in ing exchange between the animal and the environment. homoeostasis. A universal application of the integument is However in some fish, the skin may play a more active as a barrier, critical for the maintenance of a gradient physiological role. This is particularly true in species that between the concentrations of ions, gases, nutrients and/or inhabit specialised environmental niches (e.g. amphibious metabolic substrates inside the animal, and those outside and air-breathing fish such as the lungfish), those with (Chuong and Chang 2002). The importance of this role physiological characteristics that may subvert the need for differs as a function of animal phylogeny and environment. the integument as a barrier (e.g. the osmoconforming Most soft-bodied marine invertebrates, for example, are hagfish), and/or fish with anatomical modifications of the osmoconformers with limited capacities for ionoregulation. epidermis (e.g. reduced epithelial thickness). Using In these animals, the integument will clearly have a examples from different fish groups (e.g. hagfishes, elas- reduced role as a barrier, with exchange of ions and water mobranchs and teleosts), the importance of fish skin as a between the organism and the environment limited, at least transport epithelium for gases, ions, nitrogenous waste compared to that of aquatic vertebrates and invertebrate products, and nutrients was reviewed. -
Research Article Lagoon Shrimp Goby, Cryptocentrus Cyanotaenia
Iran. J. Ichthyol. (June 2019), 6(2): 98-105 Received: February 30, 2019 © 2019 Iranian Society of Ichthyology Accepted: May 31, 2019 P-ISSN: 2383-1561; E-ISSN: 2383-0964 doi: 10.22034/iji.v6i2.417 http://www.ijichthyol.org Research Article Lagoon shrimp goby, Cryptocentrus cyanotaenia (Bleeker, 1853) (Teleostei: Gobiidae), an additional fish element for the Iranian waters Reza SADEGHI1, Hamid Reza ESMAEILI*1, Mona RIAZI2, Mohamad Reza TAHERIZADEH2, Mohsen SAFAIE3,4 1Ichthyology and Molecular Systematics Research Laboratory, Zoology Section, Department of Biology, College of Sciences, Shiraz University, Shiraz, Iran. 2Marine Biology Department, Faculty of Science, University of Hormozgan, P.O.Box 3995, Bandar Abbas, Iran. 3Fisheries Department, University of Hormozgan, Bandar Abbas, P.O.Box. 3995, Iran. 4Mangrove Forest Research Center, University of Hormozgan, Bandar Abbas, P.O.Box. 3995, Iran. *Email: [email protected] Abstract: Shrimp-associated gobies are burrowing fish of small to medium size that are common inhabitants of sand and mud substrates throughout the tropical Indo-Pacific region. Due to specific habitat preference, cryptic behavior, the small size and sampling difficulties, many gobies were previously overlooked and thus the knowledge about their distribution is rather scarce. This study presents lagoon shrimp goby, Cryptocentrus cyanotaenia, as additional fish element for the Iranian waters in the coast of Hormuz Island (Strait of Hormuz). The distribution range of lagoon shrimp goby was in the Western Central Pacific and eastern Indian Ocean. This species is distinguished by the several traits such as body elongate and compressed, snout truncate, body brownish grey color with 11 vertical narrow whitish blue lines on the sides, largely greenish yellow on head and mandible, head and base of pectoral fin with numerous short blue oblique broken lines and spots with markings on the head and snout. -
Habitat Structure, Disturbance and the Composition of Sand-Dwelling Goby Assemblages in a Coral Reef Lagoon
MARINE ECOLOGY PROGRESS SERIES Vol. 268: 221–230, 2004 Published March 9 Mar Ecol Prog Ser Habitat structure, disturbance and the composition of sand-dwelling goby assemblages in a coral reef lagoon Craig Syms1, 2,*, Geoffrey P. Jones1 1School of Marine Biology and Aquaculture, James Cook University, Townsville, Queensland 4811, Australia 2Present address: Long Marine Laboratory and Department of Ecology and Evolutionary Biology, University of California, 100 Shaffer Road, Santa Cruz, California 95060, USA ABSTRACT: Coral reef lagoons and back reef areas are composed more of sand than hard reef habi- tat. They support a diverse mix of fishes, including species restricted to sandy habitats and those dependent on both hard and soft substrata. However the resident assemblages associated with sand and the factors affecting their distribution and abundance are poorly understood. Here we examine spatial co-variation in the abundance of burrowing goby assemblages and habitat characteristics in the lagoon at Lizard Island (Great Barrier Reef). The aim was to identify which key habitat-variables should be incorporated into models to predict the structure of sand-dwelling fish communities. We focused on 10 common sand goby species from 7 genera: Amblyeleotris, Cryptocentrus, Ctenogob- iops and Vanderhorstia (associated with burrows constructed by alpheid shrimps), and Amblygobius, Oplopomus and Valenciennea (free-living, burrowing species). Spatial patterns were examined by stratifying the lagoon into 6 recognizable habitat zones, and conducting visual transects in replicate sites within each zone. The abundance of all goby species encountered and habitat variables (depth, distance from reef, topography, disturbance of different types, sediment composition) were recorded in each transect. -
Minutus and Gobius Niger
MARINE ECOLOGY - PROGRESS SERIES Vol. 49: 21-26. 1988 Published November 10 Mar. Ecol. Prog. Ser. I Changes in foraging as a response to predation risk in two gobiid fish species, Pomatoschistus minutus and Gobius niger Carin Magnhagen Department of Zoology, Uppsala University, Box 561, S-751 22 Uppsala, Sweden ABSTRACT: The influence of predation risk and hunger level on the foraging rate and swimming act~vityin the sand goby Pomatoschistus minutus and the black goby Gobius niger was tested in aquarium experiments. The fish were given a choice of 2 habitats, viz, vegetation uithout food, and open sediment with natural prey density. Both species had a lower food consumption in the presence of predators than without predators, but starved fish had a higher consumption rate than fed fish both in the presence and in the absence of predators. Starved fish thus took higher risks of being eaten than did fed fish. P. minutus decreased their swimming activity in the presence of predators, which may have caused the lower food intake. However, G. niger did not change their activity with predator presence. Habitat choice must also be of importance for the foraging rate in gobies. G. niger were mostly found in the vegetation, which 1s their natural habitat. P. minutus to a greater extent inhabit open areas in the field and therefore might gain more from decreasing their activity than seeking cover at high predation risk. INTRODUCTION to take higher risk of being eaten, in order to get the food it requires, than a less hungry one (Mange1 & Many studies have shown that the risk of being eaten Clark 1986, McNamara & Houston 1986).According to by a predator may influence the foraging of an animal the foraging models developed by Mange1 & Clark (Milinski & Heller 1978, Krebs 1980, Sih 1980, Dill (1986) and McNamara & Houston (1986) the 'metabolic 1983, Lima et al. -
Lagoon Shrimp Goby, Cryptocentrus Cyanotaenia (Bleeker, 1853) (Teleostei: Gobiidae), an Additional Fish Element for the Iranian Waters
Iran. J. Ichthyol. (June 2019), 6(2): 98-105 Received: February 30, 2019 © 2019 Iranian Society of Ichthyology Accepted: May 31, 2019 P-ISSN: 2383-1561; E-ISSN: 2383-0964 doi: 10.22034/iji.v6i2.417 Archive of SID http://www.ijichthyol.org Research Article Lagoon shrimp goby, Cryptocentrus cyanotaenia (Bleeker, 1853) (Teleostei: Gobiidae), an additional fish element for the Iranian waters Reza SADEGHI1, Hamid Reza ESMAEILI*1, Mona RIAZI2, Mohamad Reza TAHERIZADEH2, Mohsen SAFAIE3,4 1Ichthyology and Molecular Systematics Research Laboratory, Zoology Section, Department of Biology, College of Sciences, Shiraz University, Shiraz, Iran. 2Marine Biology Department, Faculty of Science, University of Hormozgan, P.O.Box 3995, Bandar Abbas, Iran. 3Fisheries Department, University of Hormozgan, Bandar Abbas, P.O.Box. 3995, Iran. 4Mangrove Forest Research Center, University of Hormozgan, Bandar Abbas, P.O.Box. 3995, Iran. *Email: [email protected] Abstract: Shrimp-associated gobies are burrowing fish of small to medium size that are common inhabitants of sand and mud substrates throughout the tropical Indo-Pacific region. Due to specific habitat preference, cryptic behavior, the small size and sampling difficulties, many gobies were previously overlooked and thus the knowledge about their distribution is rather scarce. This study presents lagoon shrimp goby, Cryptocentrus cyanotaenia, as additional fish element for the Iranian waters in the coast of Hormuz Island (Strait of Hormuz). The distribution range of lagoon shrimp goby was in the Western Central Pacific and eastern Indian Ocean. This species is distinguished by the several traits such as body elongate and compressed, snout truncate, body brownish grey color with 11 vertical narrow whitish blue lines on the sides, largely greenish yellow on head and mandible, head and base of pectoral fin with numerous short blue oblique broken lines and spots with markings on the head and snout.