Cancer Molecular and Cellular Pathobiology Research
The Transcription Factor IRF8 Counteracts BCR-ABL to Rescue Dendritic Cell Development in Chronic Myelogenous Leukemia
Tomoya Watanabe1,2, Chie Hotta1, Shin-ichi Koizumi1, Kazuho Miyashita1,3, Jun Nakabayashi1, Daisuke Kurotaki1, Go R. Sato1, Michio Yamamoto1, Masatoshi Nakazawa4, Hiroyuki Fujita3, Rika Sakai5, Shin Fujisawa5, Akira Nishiyama1, Zenro Ikezawa2, Michiko Aihara2, Yoshiaki Ishigatsubo3, and Tomohiko Tamura1
Abstract BCR-ABL tyrosine kinase inhibitors (TKI) have dramatically improved therapy for chronic myelogenous leukemia (CML). However, several problems leading to TKI resistance still impede a complete cure of this disease. IFN regulatory factor-8 (IRF8) is a transcription factor essential for the development and functions of immune cells, including dendritic cells. Irf8 / mice develop a CML-like disease and IRF8 expression is downregulated in patients with CML, suggesting that IRF8 is involved in the pathogenesis of CML. In this study, by using a murine CML model, we show that BCR-ABL strongly inhibits a generation of dendritic cells from an early stage of their differentiation in vivo, concomitant with suppression of Irf8 expression. Forced expression of IRF8 overrode BCR- ABL (both wild-type and T315I-mutated) to rescue dendritic cell development in vitro, indicating that the suppression of Irf8 causes dendritic cell deficiency. Gene expression profiling revealed that IRF8 restored the expression of a significant portion of BCR-ABL–dysregulated genes and predicted that BCR-ABL has immune- stimulatory potential. Indeed, IRF8-rescued BCR-ABL–expressing dendritic cells were capable of inducing CTLs more efficiently than control dendritic cells. Altogether, our findings suggest that IRF8 is an attractive target in next-generation therapies for CML. Cancer Res; 73(22); 6642–53. 2013 AACR.
þ Introduction chronic phase in which clonal BCR-ABL hematopoietic stem Chronic myelogenous leukemia (CML) is a myeloprolifera- cells give rise to increased numbers of their progenies, partic- tive disorder that accounts for approximately 15% of newly ularly myeloid precursors and mature cells (mainly neutro- diagnosed cases of adult leukemia (1, 2). The causal molecule of phils) in the bone marrow, blood, and extramedullary tissues. this disease is BCR-ABL, a 210 kDa oncoprotein encoded by the After 3 to 5 years, if not treated, the disease progresses into a BCR-ABL fusion gene, which is generated by a t(9;22) chromo- fatal blast crisis, characterized by accumulation of immature somal translocation (3). BCR-ABL possesses deregulated ABL precursor cells with differentiation arrest. – tyrosine kinase activity that stimulates many downstream During the last decade, therapy with BCR-ABL selective signals including the MYC, NF-kB, RAS, mitogen-activated tyrosine kinase inhibitors (TKI), such as imatinib, nilotinib, and protein kinase, phosphoinositide 3-kinase (PI3K), and STAT dasatinib, has greatly improved the prognosis of patients with pathways. These signals lead to stimulation of cell prolifera- CML (4). However, several problems still impede a complete fi tion, inhibition of apoptosis, and alteration of adhesion to cure of this disease. First, a minor but signi cant subset of stroma cells and extracellular matrix. CML begins with a patients fails to respond to or becomes resistant to TKIs mainly due to acquisition of point mutations in the ABL gene, such as T315I. Second, because leukemic stem cells are not efficiently Authors' Affiliations: Departments of 1Immunology, 2Environmental eliminated by TKIs, discontinuing TKI therapy often results in 3 Immuno-Dermatology, Internal Medicine and Clinical Immunology, and CML recurrence (4). Third, while CML is highly sensitive to 4Experimental Animal Science, Yokohama City University Graduate School of Medicine; and 5Department of Hematology, Yokohama City University tumor immunity, TKIs may suppress functions of T cells and Medical Center, Yokohama, Japan dendritic cells (5–7). Therefore, next-generation therapies for Note: Supplementary data for this article are available at Cancer Research CML are required. Online (http://cancerres.aacrjournals.org/). Dendritic cells are the most potent professional antigen- T. Watanabe and C. Hotta contributed equally to this work. presenting cells and are essential for the initiation and regu- lation of innate and adaptive immunity against pathogens and Corresponding Author: Tomohiko Tamura, Department of Immunology, Yokohama City University Graduate School of Medicine, 3-9 Fukuura, tumors (8). Dendritic cells are a heterogeneous population that Kanazawa-ku, Yokohama 236-0004, Japan. Phone: 81-45-787-2612; Fax: can be divided into classical dendritic cells (cDC; further þ þ 81-45-787-2615; E-mail: [email protected] divided into CD8a dendritic cells, CD4 dendritic cells, and doi: 10.1158/0008-5472.CAN-13-0802 double-negative dendritic cells in mice) and plasmacytoid þ 2013 American Association for Cancer Research. dendritic cells (pDC) both in humans and mice (9). CD8a
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þ dendritic cells (BDCA3 in humans) are a unique subset used at 8 to 12 weeks of age. All animal experiments were capable of priming CTLs by cross-presentation of dead cell carried out in accordance with the Guidelines for Proper materials and are thus critical for tumor immunity. pDCs Conduct of Animal Experiments (Science Council of Japan), produce a large amount of type I IFN, that is, IFN-a/b, upon and all protocols were approved by the Institutional Review Toll-like receptor (TLR)-7/8/9 signaling. Type I IFN elicits Boards of Yokohama City University (Yokohama, Japan; Pro- antiviral and antitumor responses. Of note, IFN-a was once tocol #F11-85). used as a major therapeutic agent for CML (10, 11). CML has long been suggested to be highly sensitive to T cell– Flow cytometry mediated tumor immunity (12). CML responds to immune- Flow cytometry was performed using FACSCanto II (BD mediated therapies, such as IFN-a, allogeneic stem cell trans- Biosciences), and data were analyzed using the FlowJo soft- plantation (alloSCT), and donor lymphocyte infusion (13). IFN-a ware (TreeStar). For antibodies and their clone names, see induces a specific T-cell response in CML (10, 11). In alloSCT, T- Supplementary Materials and Methods. cell depletion from donor bone marrow cells results in a significant increase in relapse, especially in patients with CML. Separation of hematopoietic progenitors Yet, the fact that the disease develops in patients with CML Murine lineage marker–negative (Lin ) cells were purified suggests that tumor immunity is insufficient in patients with from bone marrow cells by the magnetic-activated cell sorting CML. Because T cells per se in patients with CML rarely express (MACS) system using the Lineage Cell Depletion Kit (Miltenyi BCR-ABL, it is reasonable to suspect dendritic cells as a culprit. Biotec) and anti-interleukin (IL)-7 receptor (IL-7R/CD127) þ þ Indeed, several studies have shown that patients with CML have antibody. For isolation of Lin Sca-1 c-Kit (LSK) cells, reduced numbers of cDCs and pDCs in the chronic phase, as MACS-purified Lin cells were stained with antibodies against compared with healthy individuals (14, 15). Other studies have Sca-1 and c-Kit, and were then purified by the fluorescence- reported that dendritic cells generated in vitro from monocytes activated cell sorting (FACS) system using a FACSAria II (BD þ or CD34 cells of patients with CML are functionally defective in Biosciences). multiple aspects, such as actin organization, antigen processing, migration, maturation, and cytokine production (16, 17). In a Retroviral transduction and CML model mice murine CML model, defective homing and impaired induction The following murine stem cell virus (MSCV) retroviral of CTLs by BCR-ABL–expressing dendritic cells have been vectors were used: MIG [MSCV-internal ribosome entry site reported (18). However, the mechanism of impaired dendritic (IRES)- GFP], MIG-p210BCR-ABL (MSCV-p210BCR-ABL-IRES- cell development in CML remains unknown. GFP), MICD8 [MSCV-IRES-human truncated CD8 (hCD8t)], IFN regulatory factor-8 (IRF8) is a hematopoietic transcrip- and MICD8-IRF8 (MSCV-IRF8-IRES-hCD8t). Lin cells were tion factor that regulates the development of multiple immune precultured for 24 hours with stem cell factor (SCF) and cell types (19). IRF8 is required for differentiation of mouse thrombopoietin (TPO) for transplantation, or SCF, IL-6, and þ cDCs (particularly CD8a dendritic cells; refs. 20, 21), pDCs IL-3 for in vitro experiments, and were then transduced with þ (22), and monocytes (particularly Ly6C monocytes; ref. 23), MSCVs by spinoculation for 2 consecutive days. All cytokines while inhibiting myeloid cell proliferation and neutrophil were purchased from PeproTech. For generating CML model differentiation (24). IRF8 is also indispensable for the differ- mice, C57BL/6-Ly5.1 LSK cells transduced with MIG or MIG- entiation of CTLs (25). Thus, Irf8 / mice develop immuno- p210BCR-ABL were injected intravenously into lethally irradiated deficiency and a CML-like syndrome (26). Importantly, muta- syngenic C57BL/6-Ly5.2 recipients. tions in the human IRF8 gene are associated with dendritic cell immunodeficiency (27). Furthermore, IRF8 expression is dra- qRT-PCR, ELISA, and immunoblot analysis matically decreased in patients with CML (28, 29). IRF8 also Quantitative PCR (qPCR) with quantitative reverse tran- overcomes the mitogenic activity of BCR-ABL in differentiating scription PCR (qRT-PCR) was performed using RNAiso Plus myeloid progenitors in vitro (30). Coexpression of IRF8 in bone (Takara Bio), DNase I (Invitrogen), PrimeScript (Takara Bio), marrow progenitors can ameliorate BCR-ABL–induced mye- Thunderbird SYBR qPCR Mix (Toyobo), and an ABI PRISM loproliferative disorder in mice (31). Coexpression of IRF8 in a 7900 sequence detection system (Applied Biosystems) accord- BCR-ABL–transformed mouse pro-B cell line induces a che- ing to the manufacturers' protocols. Primer sequences are mokine-dependent antileukemia immunity in mice (31–33). described in Supplementary Materials and Methods. Data were These findings imply that there is an antagonistic relationship analyzed using the DDCT method and normalized against between IRF8 and CML pathogenesis. However, this idea has Gapdh levels. ELISA for IFN-a and IL-12p40 was performed not been tested in terms of dendritic cell biology yet. In this using commercially available kits (PBL and BioLegend, respec- study, we have investigated how BCR-ABL and IRF8 are tively). For immunoblot analysis, anti-IRF8 (C-19; Santa Cruz involved in the development and function of dendritic cells Biotechnology), c-ABL (Cell Signaling Technology), phospho- in CML using a murine model. tyrosine (4G10; Millipore), and b-actin (AC-74; Sigma-Aldrich) antibodies were used. Materials and Methods Mice Dendritic cell culture C57BL/6-Ly5.1 or -Ly5.2 congenic mice and OT-I or OT-II T Bone marrowLin cells transduced with MSCVs were washed cell receptor transgenic mice (The Jackson Laboratory) were 24 hours after the last spinoculation and cultured with human
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fms-like tyrosine kinase-3 (Flt3)-ligand (Flt3L) for 7 days to BCR-ABL inhibits an early stage of dendritic cell induce dendritic cell differentiation. TKIs and a STAT5 inhibi- differentiation tor [N0-((4-oxo-4H-chromen-3-yl)methylene)nicotinohydrazide] We nextanalyzed progenitor populations inthe bone marrow. were purchased from Santa Cruz Biotechnology. Trichostatin A Dendritic cells originate from bone marrow hematopoietic stem (TSA) and 5-azacytidine (5-Aza) were purchased from Focus cells through monocyte-dendritic cell progenitors (MDP; Lin þ þ Biomolecules and Sigma-Aldrich, respectively. Sca-1 CD127 c-Kitint/ CD115 ) and then common dendritic þ þ cell progenitors (CDP; Lin Sca-1 CD127 Flt3 c-KitintCD115 ; þ refs. 9, 35). MDPs are a CD115 population in myeloid progeni- Microarray þ tors (Lin CD127 Sca-1 c-Kit ), and overlap with granulocyte- RNAs from two independent experiments were analyzed þ monocyte progenitors (GMP; Lin CD127 Sca-1 c-Kit CD16/ using a Whole Mouse Genome 8 60 K Microarray (Agilent) þ þ according to the manufacturer's protocol. Microarray data are 32 CD34 ) and to a lesser extent common myeloid progenitors þ low þ available at the GEO/NCBI database (GSE44920). For details, (CMP; Lin CD127 Sca-1 c-Kit CD16/32 CD34 ). Within myeloid progenitors, CMPs progress toward either GMPs or see Supplementary Materials and Methods. megakaryocyte-erythroid progenitors (MEP; Lin CD127 Sca- þ 1 c-Kit CD16/32 CD34 ). T-cell response assays þ Interestingly, the bone marrow GFP population in BCR-ABL Antigen presentation capability of dendritic cells via MHC mice lacked MDPs and CDPs (Fig. 1E). The percentages of total class II (MHC-II) was evaluated using OT-II T cells essentially þ GFP myeloid progenitors were comparable between BCR-ABL as previously described (21). In vitro CTL assays were per- þ mice and MIG mice (Supplementary Fig. S1E). GFP myeloid formed using OT-I T cells essentially by the method previously progenitors in BCR-ABL mice had relatively low percentages of established (34). CMPs and GMPs, which could be partially due to the lack of MDPs, while they contained a modestly increased percentage of þ Results MEPs and harbored an aberrant CD34 CD16/32 population. BCR-ABL inhibits dendritic cell development and Irf8 Despite the sharp decrease in MDP counts, we noted that expression monocyte counts were not significantly affected in BCR-ABL To investigate how dendritic cell development is affected mice (data not shown), consistent with the fact that monocyte in CML, we first used a murine CML model in which counts are not reduced in patients with CML. The developmen- þ hematopoietic progenitors (LSK cells) were transduced with tal route of these BCR-ABL monocytes is unknown, but one bicistronic MIG-p210BCR-ABL retrovirus (carrying cDNAs possibility is that they are derived from upstream myeloid encoding BCR-ABL and GFP) in the presence of SCF and progenitors without transiting MDPs. Overall, these data suggest TPO, and then transplanted these cells into lethally irradiated that BCR-ABL affects the early stage of dendritic cell differen- mice. These mice (BCR-ABL mice), but not mice transplanted tiation, particularly the generation of MDPs. with empty MIG-transduced cells (MIG mice), exhibited We analyzed IRF8 expression in BCR-ABL and MIG mice. splenomegaly and died by 4 to 8 weeks after the transplan- qRT-PCR analysis revealed that BCR-ABL suppressed Irf8 tation (Fig. 1A and Supplementary Fig. S1A). Wright–Giemsa mRNA expression both in Lin bone marrow progenitors and staining and flow-cytometric analyses of splenic cells splenic cells (Fig. 1F). Immunostaining for IRF8 in splenic revealed that BCR-ABL mice had significant increases in the dendritic cells demonstrated that the remaining few BCR- þ þ þ percentage and number of GFP (therefore BCR-ABL ) ABL dendritic cells expressed lower levels of IRF8 than neutrophils, a hallmark of CML, as compared with MIG mice control dendritic cells (Fig. 1G and Supplementary Fig. S1F). (Fig. 1B and C). We found that both cDCs (CD11chigh cells) and pDCs IRF8 overrides BCR-ABL to rescue dendritic cell þ (CD11clowPDCA-1 cells) were dramatically diminished in differentiation BCR-ABL mice as compared with MIG mice; the percentage To further investigate the mechanisms involved in this þ and number of GFP cDCs showed 16.7- and 6.5-fold reduc- process, we examined whether BCR-ABL inhibits dendritic tions, respectively, and those of pDCs showed 18.1- and 8.1-fold cell differentiation in vitro. We transduced MIG-p210BCR-ABL reductions, respectively (Fig. 1D). More detailed analysis dem- or empty MIG retrovirus into bone marrow Lin progenitors in þ onstrated that all cDC subsets, that is, CD8a dendritic cells, the presence of SCF, IL-6, and IL-3, and the transduced cells þ CD4 dendritic cells, and CD8a CD4 (double-negative) den- were then cultured with Flt3L for 7 days to induce differen- þ dritic cells, were significantly diminished (Supplementary Fig. tiation toward cDCs (CD11chighMHC-II ) and pDCs þ þ þ S1B). In addition, we noted that the remaining GFP cDCs in (CD11c B220 CD11blow; ref. 21). In MIG-transduced control BCR-ABL mice expressed lower levels of MHC-II compared cultures, cDCs and pDCs were efficiently generated (Fig. 2A). with those in MIG mice (Supplementary Fig. S1C). In fact, these In BCR-ABL–transduced cultures, however, the development spared dendritic cells exhibited a reduced capability of pre- of both cDCs and pDCs was significantly inhibited in terms of senting ovalbumin (OVA) antigen, as demonstrated by the percentages and absolute cell counts, even though BCR-ABL– proliferation of and IFN-g production by OT-II T cells (Sup- transduced cells showed a greater increase in cell number plementary Fig. S1D). These results indicate that BCR-ABL during the Flt3L culture than MIG-transduced cells. Wright– strongly and globally inhibits the generation of dendritic cells Giemsa staining revealed that while many of the MIG- in vivo. transduced cells showed typical dendritic cell morphology,
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A B GFP+ cells 30 ** MIG MIG BCR-ABL
) BCR-ABL 7 20 10
× ** 10
0 spleen ( + MIG BCR-ABL Absolute cell number/ cell Absolute Total GFP Figure 1. Inhibition of dendritic cell C GFP+ cells GFP+ neutrophils development and Irf8 expression MIG BCR-ABL by BCR-ABL in vivo. LSK cells 60 ** 4 ** ) cells 6
transduced with empty MIG or + 3 BCR-ABL 40 MIG-p210 were 10 × × 2 transplanted into lethally irradiated
CD11b 20 mice. Spleens and bone marrow 6.8% 45.8 1 cells in recipient mice were 0 0 analyzed 4 to 5 weeks after Ly6G ( spleen MIG MIG ABL ABL % in total GFP total in % BCR- BCR- transplantation (n ¼ 5 each except number/ cell Absolute for Fig. 1G, in which n ¼ 3 each). D GFP+ cells cDCs pDCs cDCs pDCs A, spleens (left) and splenic cell ** ** ** ** numbers (right). B, Wright–Giemsa MIG BCR-ABL 6 1.2 150 20 ) cells
þ 4 stains of FACS-sorted GFP 1.1% 0.15 + 15 4 0.8 10 100
– fl × spleen cells. C E, ow-cytometric 10 analyses of splenic neutrophils (C), 2 0.4 50 5
splenic dendritic cells (D), and bone PDCA-1 Irf8 marrow MDPs and CDPs (E). F, 4.9 0.5 0 0.0 0 0 mRNA expression levels in FACS- spleen ( % in total GFP total in % MIG MIG MIG MIG ABL ABL ABL þ ABL CD11c cell number/ Absolute BCR- BCR- BCR- sorted GFP bone marrow (BM) BCR- Lin cells and splenic cells determined by qRT-PCR in E F Irf8 mRNA triplicate. G, IRF8 protein BM Lin− Spleen þ ** ** expression levels in splenic GFP GFP+ Lin− CD127− Sca-1− cells MDPs high þ 0.020 0.03 CD11c cDCs and GFP PDCA- 12 ** þ MIG BCR-ABL ) low cells 0.015
1 CD11c pDCs determined by − 11.5% 0.7 9 0.02 flow cytometry. The mean
Lin 0.010 + fluorescent intensity (MFI) was 6 Gapdh 0.01 (/ 0.005 calculated by subtracting the 3 c-Kit 0.000 0.00 autofluorescence intensity. All Expression level 0 values in bar graphs are the mean MIG MIG ABL ABL % in GFP BCR- BCR-
P P MIG
SD. , < 0.05 and , < 0.01 ABL t CD115 BCR- (Student test). G IRF8 protein in DCs cDCs pDCs GFP+ Lin− c-Kitint Flt3+ cells CDPs ** MIG BCR-ABL 5 ** * cells 40 100
− 4 30 75 13.2 0.4 Lin 3 + 20 50 2 MFI 1 10 25 CD115 0 0 0 % inGFP MIG ABL MIG ABL MIG ABL
CD127 BCR- BCR- BCR-
BCR-ABL–transduced cells exhibited neutrophil-like, macro- We next asked whether restoration of IRF8 expression phage-like, or immature morphologies (Fig. 2B). Furthermore, could improve dendritic cell differentiation impaired by the induction of Irf8 mRNA expression during the Flt3L culture BCR-ABL. To this end, we cotransduced Lin cells with was almost completely abrogated by BCR-ABL (Fig. 2C). When MICD8-IRF8 (that expresses IRF8 and hCD8t) together with a kinase-dead K1172R mutant of BCR-ABL was transduced into MIG-p210BCR-ABL, and treated them with Flt3L. hCD8t, used cells, neither dendritic cell development nor IRF8 expression as a transduction marker, does not transmit any signals was affected, suggesting that the kinase activity of BCR-ABL is because it contains no cytoplasmic domain. Flow-cytometric þ þ required for the observed inhibitory effects (Fig. 2D). The analysis of doubly transduced (i.e., GFP hCD8t ) cells expression levels of wild-type (WT) and K1172R BCR-ABL revealed that the forced expression of IRF8 efficiently res- were comparable, and K1172R lacked autophosphorylation at cued differentiation of both cDCs and pDCs (Fig. 3A). The tyrosine residues. expression levels of Irf8 mRNA and IRF8 protein in
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+ A GFP+ cells cDCs D GFP cells MIG BCR-ABL 100 ** MIG BCR-ABL K1172R
72.4% 5.8 cells 80 65.8% 10.5 69.8 + 60 40 MHC-II MHC-II 20
% in GFP in % 0 MIG CD11c ABL CD11c BCR- + + GFP+ CD11c+ cells GFP CD11c cells pDCs MIG BCR-ABL 16 ** MIG BCR-ABL K1172R
cells 12 + 8 4 CD11b 9.6 0.1 8.7 CD11b 13.5 0.1
% inGFP (8.9) (0.02) (8.1) (12.3) (0.02) 0
MIG B220 B220 ABL BCR- Irf8 mRNA Total cDCs pDCs 40 5 *** * 80 * ** ** 0.20 4 60 30 ) 0.15 BCR-ABL 3 / mL) 40 20 4 2 0.10 Tyr-P Gapdh 10 20 10 BCR-ABL (/ × × 1 0.05 (
Relative level level Relative IRF8 0 0 0 0.00 b Absolute cell number Absolute -Actin MIG MIG MIG ABL ABL ABL MIG BCR- BCR- BCR- K1172R
B C BCR-ABL
+ ) GFP cells Irf8 mRNA MIG BCR-ABL 0.25 **
Gapdh 0.20 MIG 0.15 BCR-ABL 0.10 ** 0.05 ** 0.00 0357
Relative level (/ level Relative Days