Outdoor Cultivation of Chlorella Vulgaris - Assessment of Yield Influencing Parameters and Application As Biogas Substrate
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Chlorophyta, Trebouxiophyceae) in Lake Tanganyika (Africa)*
Biologia 63/6: 799—805, 2008 Section Botany DOI: 10.2478/s11756-008-0101-4 Siderocelis irregularis (Chlorophyta, Trebouxiophyceae) in Lake Tanganyika (Africa)* Maya P. Stoyneva1, Elisabeth Ingolič2,WernerKofler3 &WimVyverman4 1Sofia University ‘St Kliment Ohridski’, Faculty of Biology, Department of Botany, 8 bld. Dragan Zankov, BG-1164 Sofia, Bulgaria; e-mail: [email protected], [email protected]fia.bg 2Graz University of Technology, Research Institute for Electron Microscopy, Steyrergasse 17,A-8010 Graz, Austria; e-mail: [email protected] 3University of Innsbruck, Institute of Botany, Sternwartestrasse 15,A-6020 Innsbruck, Austria; e-mail: werner.kofl[email protected] 4Ghent University, Department Biology, Laboratory of Protistology and Aquatic Ecology, Krijgslaan 281-S8,B-9000 Gent, Belgium; e-mail: [email protected] Abstract: Siderocelis irregularis Hindák, representing a genus Siderocelis (Naumann) Fott that is known from European temperate waters, was identified as a common phytoplankter in Lake Tanganyika. It was found aposymbiotic as well as ingested (possibly endosymbiotic) in lake heterotrophs, mainly Strombidium sp. and Vorticella spp. The morphology and ultrastructure of the species, studied with LM, SEM and TEM, are described with emphasis on the structure of the cell wall and the pyrenoid. Key words: Chlorophyta; cell wall; pyrenoid; symbiosis; ciliates; Strombidium; Vorticella Introduction ics of symbiotic species in general came into alignment with that of free-living algae and the term ‘zoochlorel- Tight partnerships between algae and aquatic inver- lae’ was abandoned as being taxonomically ambiguous tebrates, including symbiotic relationships, have long (e.g. Bal 1968; Reisser & Wiessner 1984; Taylor 1984; been of interest and a number of excellent reviews are Reisser 1992a). -
An Integrative Approach Sheds New Light Onto the Systematics
www.nature.com/scientificreports OPEN An integrative approach sheds new light onto the systematics and ecology of the widespread ciliate genus Coleps (Ciliophora, Prostomatea) Thomas Pröschold1*, Daniel Rieser1, Tatyana Darienko2, Laura Nachbaur1, Barbara Kammerlander1, Kuimei Qian1,3, Gianna Pitsch4, Estelle Patricia Bruni4,5, Zhishuai Qu6, Dominik Forster6, Cecilia Rad‑Menendez7, Thomas Posch4, Thorsten Stoeck6 & Bettina Sonntag1 Species of the genus Coleps are one of the most common planktonic ciliates in lake ecosystems. The study aimed to identify the phenotypic plasticity and genetic variability of diferent Coleps isolates from various water bodies and from culture collections. We used an integrative approach to study the strains by (i) cultivation in a suitable culture medium, (ii) screening of the morphological variability including the presence/absence of algal endosymbionts of living cells by light microscopy, (iii) sequencing of the SSU and ITS rDNA including secondary structures, (iv) assessment of their seasonal and spatial occurrence in two lakes over a one‑year cycle both from morphospecies counts and high‑ throughput sequencing (HTS), and, (v) proof of the co‑occurrence of Coleps and their endosymbiotic algae from HTS‑based network analyses in the two lakes. The Coleps strains showed a high phenotypic plasticity and low genetic variability. The algal endosymbiont in all studied strains was Micractinium conductrix and the mutualistic relationship turned out as facultative. Coleps is common in both lakes over the whole year in diferent depths and HTS has revealed that only one genotype respectively one species, C. viridis, was present in both lakes despite the diferent lifestyles (mixotrophic with green algal endosymbionts or heterotrophic without algae). -
A First Insight Into the Genome of Prototheca Wickerhamii, a Major
Bakuła et al. BMC Genomics (2021) 22:168 https://doi.org/10.1186/s12864-021-07491-8 RESEARCH ARTICLE Open Access A first insight into the genome of Prototheca wickerhamii, a major causative agent of human protothecosis Zofia Bakuła1, Paweł Siedlecki2,3, Robert Gromadka4, Jan Gawor4, Agnieszka Gromadka3, Jan J. Pomorski5, Hanna Panagiotopoulou5 and Tomasz Jagielski1* Abstract Background: Colourless microalgae of the Prototheca genus are the only known plants that have consistently been implicated in a range of clinically relevant opportunistic infections in both animals and humans. The Prototheca algae are emerging pathogens, whose incidence has increased importantly over the past two decades. Prototheca wickerhamii is a major human pathogen, responsible for at least 115 cases worldwide. Although the algae are receiving more attention nowadays, there is still a substantial knowledge gap regarding their biology, and pathogenicity in particular. Here we report, for the first time, the complete nuclear genome, organelle genomes, and transcriptome of the P. wickerhamii type strain ATCC 16529. Results: The assembled genome size was of 16.7 Mbp, making it the smallest and most compact genome sequenced so far among the protothecans. Key features of the genome included a high overall GC content (64.5%), a high number (6081) and proportion (45.9%) of protein-coding genes, and a low repetitive sequence content (2.2%). The vast majority (90.6%) of the predicted genes were confirmed with the corresponding transcripts upon RNA-sequencing analysis. Most (93.2%) of the genes had their putative function assigned when searched against the InterProScan database. A fourth (23.3%) of the genes were annotated with an enzymatic activity possibly associated with the adaptation to the human host environment. -
Genetic Diversity of Symbiotic Green Algae of Paramecium Bursaria Syngens Originating from Distant Geographical Locations
plants Article Genetic Diversity of Symbiotic Green Algae of Paramecium bursaria Syngens Originating from Distant Geographical Locations Magdalena Greczek-Stachura 1, Patrycja Zagata Le´snicka 1, Sebastian Tarcz 2 , Maria Rautian 3 and Katarzyna Mozd˙ ze˙ ´n 1,* 1 Institute of Biology, Pedagogical University of Krakow, Podchor ˛azych˙ 2, 30-084 Kraków, Poland; [email protected] (M.G.-S.); [email protected] (P.Z.L.) 2 Institute of Systematics and Evolution of Animals, Polish Academy of Sciences, Sławkowska 17, 31-016 Krakow, Poland; [email protected] 3 Laboratory of Protistology and Experimental Zoology, Faculty of Biology and Soil Science, St. Petersburg State University, Universitetskaya nab. 7/9, 199034 Saint Petersburg, Russia; [email protected] * Correspondence: [email protected] Abstract: Paramecium bursaria (Ehrenberg 1831) is a ciliate species living in a symbiotic relationship with green algae. The aim of the study was to identify green algal symbionts of P. bursaria originating from distant geographical locations and to answer the question of whether the occurrence of en- dosymbiont taxa was correlated with a specific ciliate syngen (sexually separated sibling group). In a comparative analysis, we investigated 43 P. bursaria symbiont strains based on molecular features. Three DNA fragments were sequenced: two from the nuclear genomes—a fragment of the ITS1-5.8S rDNA-ITS2 region and a fragment of the gene encoding large subunit ribosomal RNA (28S rDNA), Citation: Greczek-Stachura, M.; as well as a fragment of the plastid genome comprising the 30rpl36-50infA genes. The analysis of two Le´snicka,P.Z.; Tarcz, S.; Rautian, M.; Mozd˙ ze´n,K.˙ Genetic Diversity of ribosomal sequences showed the presence of 29 haplotypes (haplotype diversity Hd = 0.98736 for Symbiotic Green Algae of Paramecium ITS1-5.8S rDNA-ITS2 and Hd = 0.908 for 28S rDNA) in the former two regions, and 36 haplotypes 0 0 bursaria Syngens Originating from in the 3 rpl36-5 infA gene fragment (Hd = 0.984). -
Dissertation „Methodological Approaches for Assessing the Environmental Performance of Perennial Crop- Based Value Chains”
Institute of Crop Science (340) Department of Biobased Products and Energy Crops (340b) D-70599 Stuttgart-Hohenheim, Germany Supervisor: Prof. Dr. Iris Lewandowski Dissertation „Methodological approaches for assessing the environmental performance of perennial crop- based value chains” Submitted to the Faculty of Agricultural Science, in fulfilment of the regulations to acquire the degree: Doctor scientiarum agriculturae (Dr. sc. agr.) Date of the acceptance of the dissertation: 02.10.2017 Date of oral exam: 29.11.2017 Submitted by Moritz Wagner Dean Faculty of Agricultural Science Prof. Dr. Ralf T. Vögele Thesis Committee Supervisor Prof. Dr. Iris Lewandowski University of Hohenheim, Germany Co-Supervisors Prof. Dr.-Ing. Martin Kaltschmitt Hamburg University of Technology, Germany Prof. Dr. Christian Lippert University of Hohenheim, Germany Content List of Figures ............................................................................................................................ ii List of Acronyms ....................................................................................................................... iii Abstract ...................................................................................................................................... 1 Zusammenfassung ...................................................................................................................... 3 1. General Introduction .................................................................................................... 6 1.1. -
Towards Engineering the Microalga Chlorella Sorokiniana for the Production of Tailored High-Value Oils
Towards engineering the microalga Chlorella sorokiniana for the production of tailored high-value oils Xenia Spencer-Milnes UCL (University College London) A thesis submitted for the degree of Doctor of Philosophy (PhD) September 2018 1 DECLARATION DECLARATION I, Xenia Spencer-Milnes confirm that the work presented in this thesis is my own. Where information has been derived from other sources, I confirm that this has been indicated in the thesis. …………………………………………………………………………………….. 2 ACKNOWLEDGEMENTS ACKNOWLEDGEMENTS Firstly, I would like to thank my supervisor, Professor Saul Purton, for his continued support throughout these last four years and the opportunity to be part of such an interesting project. Also, many thanks go to my thesis committee and secondary supervisors: Dr Olga Sayanova for providing such expertise in the area of lipid metabolism and the opportunity to conduct some research at Rothamsted Research, Professor Kaila Srai for such constructive feedback, and Dr Vitor Pinheiro for providing invaluable support and advice through some difficult times. I would also like to thank all members of the Algal Oils by Design sLoLa group for continued stimulating discussion and inspiration at meetings. I would especially like to thank Dr Mary Hamilton and Dr Richard Smith from Rothamstead Research for their patience and support in teaching me new techniques and putting up with a myriad of questions. I also must thank former lab members Noreen Hiegle for showing me the ropes using Agrobacterium and Dr Sofie Vonlanthen who established much Chlorella work in the lab and was very quick to respond to my flurry of email questions in the beginning. -
CV Kaltschmitt.Pdf
Martin KALTSCHMITT 1 Curriculum Vitae 1. Proposed Position: - 2. Name of Firm: Hamburg University of Technology (TUHH), Institute of Environmental Technology and Energy Economics (IUE) 3. Name of Staff: Prof. Dr.-Ing. Martin Kaltschmitt 4. Date of Birth: 18th April 1961 Nationality: Germany 5. Education 81 – 86 Study of Petroleum Engineering at Clausthal University of Technology (Prediploma 3/1983, Diploma 9/1986) 86 – 90 PhD-Student at University of Stuttgart 90 Graduation (oral examination 12/1990) 91 – 92 Post-Doc Scholarship from DFG Head of research group "Renewable Energy" 96 – 97 Habilitation in the field "Renewable Energy" 98 – 00 Research scholarship from DFG at King's College London, at University of California in Berkeley resp. at University of Stuttgart 03 Appointment as Honorary Professor for "Renewable Energy" at Freiberg University of Technology 6. Membership of Professional Associations: VDI-GET, DGMK, KTBL 7. Selected Other Activities since 90 More than 18 book publications, more than 180 publications in scientific journals, more than 250 conference contributions and more than 130 scien- tific speeches since 92 Short time consultancy activities for various institutions (u. a. EC DG RTD and DG TREN, IAEA, BMELV, BMWi, DFG, FWF, FNR, DBU) since 01 Chairman of the working group Terminology, Definition and Description" of CEN TC 335 "Solid Biofuels" since 02 Chairman of the VDI-Committee "Renewable Energy" (FA-RE) since 02 Chairman of the VDI-Standards Committee "Quality Criteria Biogas" since 06 Chairman of the working group "Sustainability" of the European Biofuels Technology Platform since 07 Member of the Board of Trustees and the Scientific Committee of the IMDEA Energy Institute in Madrid / Spain since 11 Editor of the “Biomass Conversion and Biorefinery”-Jounal since 11 Member of the Hamburg Academy of Science CV Kaltschmitt Martin KALTSCHMITT 2 8. -
Encyclopedia of Sustainability Science and Technology Series
Encyclopedia of Sustainability Science and Technology Series Editor-in-Chief Robert A. Meyers The Encyclopedia of Sustainability Science and Technology series (ESST) addresses the grand challenge for science and engineering today. It provides unprecedented, peer-reviewed coverage in more than 600 separate articles comprising 20 topical volumes, incorporating many updates from the first edition as well as new articles. ESST establishes a foundation for the many sustainability and policy evaluations being performed in institutions worldwide. An indispensable resource for scientists and engineers in developing new technologies and for applying existing technologies to sustainability, the Encyclopedia of Sustainability Science and Technology series is presented at the university and professional level needed for scientists, engineers, and their students to support real progress in sustainability science and technology. Although the emphasis is on science and technology rather than policy, the Encyclopedia of Sustainability Science and Technology series is also a com- prehensive and authoritative resource for policy makers who want to under- stand the scope of research and development and how these bottom-up innovations map on to the sustainability challenge. More information about this series at https://link.springer.com/bookseries/15436 Martin Kaltschmitt Editor Energy from Organic Materials (Biomass) A Volume in the Encyclopedia of Sustainability Science and Technology, Second Edition Volume 2 With 615 Figures and 228 Tables Editor Martin Kaltschmitt Institute of Environmental Technology and Energy Economics (IUE) Hamburg University of Technology (TUHH) Hamburg, Germany ISBN 978-1-4939-7812-0 ISBN 978-1-4939-7813-7 (eBook) ISBN 978-1-4939-7814-4 (print and electronic bundle) https://doi.org/10.1007/978-1-4939-7813-7 Library of Congress Control Number: 2018944126 # Springer Science+Business Media, LLC, part of Springer Nature 2019 This work is subject to copyright. -
Micractinium Tetrahymenae (Trebouxiophyceae, Chlorophyta), a New Endosymbiont Isolated from Ciliates
diversity Article Micractinium tetrahymenae (Trebouxiophyceae, Chlorophyta), a New Endosymbiont Isolated from Ciliates Thomas Pröschold 1,*, Gianna Pitsch 2 and Tatyana Darienko 3 1 Research Department for Limnology, Leopold-Franzens-University of Innsbruck, Mondsee, A-5310 Mondsee, Austria 2 Limnological Station, Department of Plant and Microbial Biology, University of Zürich, CH-8802 Kilchberg, Switzerland; [email protected] 3 Albrecht-von-Haller-Institute of Plant Sciences, Experimental Phycology and Culture Collection of Algae, Georg-August-University of Göttingen, D-37073 Göttingen, Germany; [email protected] * Correspondence: [email protected] Received: 28 April 2020; Accepted: 13 May 2020; Published: 15 May 2020 Abstract: Endosymbiosis between coccoid green algae and ciliates are widely distributed and occur in various phylogenetic lineages among the Ciliophora. Most mixotrophic ciliates live in symbiosis with different species and genera of the so-called Chlorella clade (Trebouxiophyceae). The mixotrophic ciliates can be differentiated into two groups: (i) obligate, which always live in symbiosis with such green algae and are rarely algae-free and (ii) facultative, which formed under certain circumstances such as in anoxic environments an association with algae. A case of the facultative endosymbiosis is found in the recently described species of Tetrahymena, T. utriculariae, which lives in the bladder traps of the carnivorous aquatic plant Utricularia reflexa. The green endosymbiont of this ciliate belonged to the genus Micractinium. We characterized the isolated algal strain using an integrative approach and compared it to all described species of this genus. The phylogenetic analyses using complex evolutionary secondary structure-based models revealed that this endosymbiont represents a new species of Micractinium, M. -
Compartmentalization of Mrnas in the Giant, Unicellular Green Algae
bioRxiv preprint doi: https://doi.org/10.1101/2020.09.18.303206; this version posted September 18, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Compartmentalization of mRNAs in the giant, 2 unicellular green algae Acetabularia acetabulum 3 4 Authors 5 Ina J. Andresen1, Russell J. S. Orr2, Kamran Shalchian-Tabrizi3, Jon Bråte1* 6 7 Address 8 1: Section for Genetics and Evolutionary Biology, Department of Biosciences, University of 9 Oslo, Kristine Bonnevies Hus, Blindernveien 31, 0316 Oslo, Norway. 10 2: Natural History Museum, University of Oslo, Oslo, Norway 11 3: Centre for Epigenetics, Development and Evolution, Department of Biosciences, University 12 of Oslo, Kristine Bonnevies Hus, Blindernveien 31, 0316 Oslo, Norway. 13 14 *Corresponding author 15 Jon Bråte, [email protected] 16 17 Keywords 18 Acetabularia acetabulum, Dasycladales, UMI, STL, compartmentalization, single-cell, mRNA. 19 20 Abstract 21 Acetabularia acetabulum is a single-celled green alga previously used as a model species for 22 studying the role of the nucleus in cell development and morphogenesis. The highly elongated 23 cell, which stretches several centimeters, harbors a single nucleus located in the basal end. 24 Although A. acetabulum historically has been an important model in cell biology, almost 25 nothing is known about its gene content, or how gene products are distributed in the cell. To 26 study the composition and distribution of mRNAs in A. -
Morphology, Composition, Production, Processing and Applications Of
Morphology, composition, production, processing and applications of Chlorella vulgaris: A review Carl Safi, Bachar Zebib, Othmane Merah, Pierre-Yves Pontalier, Carlos Vaca-Garcia To cite this version: Carl Safi, Bachar Zebib, Othmane Merah, Pierre-Yves Pontalier, Carlos Vaca-Garcia. Morphology, composition, production, processing and applications of Chlorella vulgaris: A review. Renewable and Sustainable Energy Reviews, Elsevier, 2014, 35, pp.265-278. 10.1016/j.rser.2014.04.007. hal- 02064882 HAL Id: hal-02064882 https://hal.archives-ouvertes.fr/hal-02064882 Submitted on 12 Mar 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. OATAO is an open access repository that collects the work of Toulouse researchers and makes it freely available over the web where possible This is an author’s version published in: http://oatao.univ-toulouse.fr/23269 Official URL: https://doi.org/10.1016/j.rser.2014.04.007 To cite this version: Safi, Carl and Zebib, Bachar and Merah, Othmane and Pontalier, Pierre- Yves and Vaca-Garcia, Carlos Morphology, composition, production, -
Innovation Outlook: Advanced Liquid Biofuels
INNOVATION OUTLOOK ADVANCED LIQUID BIOFUELS Copyright © IRENA 2016 Unless otherwise stated, this publication and material featured herein are the property of the International Renewable Energy Agency (IRENA) and are subject to copyright by IRENA. Material in this publication may be freely used, shared, copied, reproduced, printed and/or stored, provided that all such material is clearly attributed to IRENA and bears a notation that it is subject to copyright (© IRENA). Material contained in this publication attributed to third parties may be subject to third-party copyright and separate terms of use and restrictions, including restrictions in relation to any commercial use. ISBN 978-92-95111-51-6 (print) ISBN 978-92-95111-52-3 (PDF) About IRENA IRENA is an intergovernmental organisation that supports countries in their transition to a sustainable energy future, and serves as the principal platform for international co-operation, a centre of excellence, and a repository of policy, technology, resource and fi nancial knowledge on renewable energy. IRENA promotes the widespread adoption and sustainable use of all forms of renewable energy, including bioenergy, geothermal, hydropower, ocean, solar and wind energy, in the pursuit of sustainable development, energy access, energy security and low carbon economic growth and prosperity. www.irena.org Acknowledgements This report benefi ted greatly from reviews and comments by experts and institutions including: Jim Lane (Biofuels Digest), Jim McMillan (US National Renewable Energy Laboratory – NREL and International Energy Agency – IEA Bioenergy), Jim Spaeth (US Department of Energy – US DOE) and Arthur Wellinger (IEA Bioenergy). IRENA would also like to thank the following experts for inputs: David Bauner (Renetech), Ami Ben-Amotz (formerly at Seambiotic and The National Institute of Oceanography of Israel), John Benemann (MicroBio Engineering), Robert C.