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The Lock-And-Key Analogy in 20Th Century Biochemistry
From: Rebecca Mertens The Construction of Analogy-Based Research Programs The Lock-and-Key Analogy in 20th Century Biochemistry April 2019, 224 p., pb., ill. 34,99 € (DE), 978-3-8376-4442-5 E-Book: PDF: 34,99 € (DE), ISBN 978-3-8394-4442-9 When the German chemist Emil Fischer presented his lock-and-key hypothesis in 1899, his analogy to describe the molecular relationship between enzymes and substrates quickly gained vast influence and provided future generations of scientists with a tool to investigate the relation between chemical structure and biological specificity. Rebecca Mertens explains the appeal of the lock-and-key analogy by its role in model building and in the construction of long-term, cross-generational research programs. She argues that a crucial feature of these research programs, namely ascertaining the continuity of core ideas and concepts, is provided by a certain way of analogy-based modelling. Rebecca Mertens (PhD), born in 1984, is a postdoctoral researcher in the history and philosophy of science at the University of Bielefeld, Germany. She works on the role of analogies, models and forms of comparison in the history of molecular genetics and is a member of the collaborative research program "Practices of ComparisonÚ Ordering and Changing the World". During her graduate and doctoral studies, she was a visiting scholar at the École Normale Supérieure in Paris and a visiting graduate fellow at the Minnesota Center for Philosophy of Science. For further information: www.transcript-verlag.de/en/978-3-8376-4442-5 © 2019 -
Historical Group
Historical Group NEWSLETTER and SUMMARY OF PAPERS No. 64 Summer 2013 Registered Charity No. 207890 COMMITTEE Chairman: Prof A T Dronsfield | Prof J Betteridge (Twickenham, 4, Harpole Close, Swanwick, Derbyshire, | Middlesex) DE55 1EW | Dr N G Coley (Open University) [e-mail [email protected]] | Dr C J Cooksey (Watford, Secretary: Prof. J. W. Nicholson | Hertfordshire) School of Sport, Health and Applied Science, | Prof E Homburg (University of St Mary's University College, Waldegrave | Maastricht) Road, Twickenham, Middlesex, TW1 4SX | Prof F James (Royal Institution) [e-mail: [email protected]] | Dr D Leaback (Biolink Technology) Membership Prof W P Griffith | Dr P J T Morris (Science Museum) Secretary: Department of Chemistry, Imperial College, | Mr P N Reed (Steensbridge, South Kensington, London, SW7 2AZ | Herefordshire) [e-mail [email protected]] | Dr V Quirke (Oxford Brookes Treasurer: Dr J A Hudson | University) Graythwaite, Loweswater, Cockermouth, | Prof. H. Rzepa (Imperial College) Cumbria, CA13 0SU | Dr. A Sella (University College) [e-mail [email protected]] Newsletter Dr A Simmons Editor Epsom Lodge, La Grande Route de St Jean, St John, Jersey, JE3 4FL [e-mail [email protected]] Newsletter Dr G P Moss Production: School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS [e-mail [email protected]] http://www.chem.qmul.ac.uk/rschg/ http://www.rsc.org/membership/networking/interestgroups/historical/index.asp 1 RSC Historical Group Newsletter No. 64 Summer 2013 Contents From the Editor 2 Obituaries 3 Professor Colin Russell (1928-2013) Peter J.T. -
Antibodies with Some Bite Antibodies Have Yet to Be Determined, It Is Reasonable to Suppose That the Ester Or David E
-~-------------------------------------N8NSANDVIEWS----------------_N_A_TU_R_E_V-O_L_._32_5_22_J_A_N_U_A_RY__ 19~87 Enzyme catalysis kinetics and is subject to competitive inhibition. Although the detailed chemical mechanisms of these catalytic Antibodies with some bite antibodies have yet to be determined, it is reasonable to suppose that the ester or David E. Hansen carbamate is strained towards a tetra hedral geometry on binding, thus facilitat THE spectacular specificities and rate William Jencks', more directly, stated in ing the attack of the hydroxide ion. Fur enhancements of enzymes are without 1969 thermore, the Scripps group has already equal among all known catalysts. It is no If complementarity between active site and found that their antibody can act via both wonder then that the design of new en transition state contributes significantly to nucleophilic and general base catalysis, zymes has long been a goal of biochemists. enzyme catalysis, it should be possible to syn depending on the substrate used. Now two independent groups, one led by thesize an enzyme by constructing a binding The fact that this approach succeeded at Alfonso Tramontano and Richard Lerner site. One way to do this is to prepare an anti all gives great hope to those attempting to of the Scripps Clinic and Research Foun body to a haptenic group which resembles the isolate even more efficient antibody cat dation', and the other by Peter Schultz of transition state of a given reaction. The com alysts by this and by other strategies. In the University of California at Berkeley\ bining sites of such antibodies should be com addition, it may be possible to modify have taken steps towards this goal by plementary to the transition state and should cause an acceleration by forcing bound sub existing catalytic antibodies. -
CV Sir Arthur Harden
Curriculum Vitae Prof. Dr. Arthur Harden Name: Sir Arthur Harden Lebensdaten: 12. Oktober 1865 ‐ 17. Juni 1940 Arthur Harden war ein britischer Chemiker. Nach ihm sind die Harden‐Young‐Ester (Zuckerphospha‐ te) benannt. Für seine Forschungen über die Gärung von Zucker und dessen Gärungsenzyme wurde er im Jahr 1929 gemeinsam mit dem deutsch‐schwedischen Chemiker Hans von Euler‐Chelpin mit dem Nobelpreis für Chemie ausgezeichnet. Werdegang Arthur Harden studierte von 1882 bis 1885 Chemie am Owens College der University of Manchester. 1868 ging er mit einem Dalton Scholarship an die Universität Erlangen, um beim Chemiker Otto Fi‐ scher, einem Vetter von Emil Fischer (Nobelpreis für Chemie 1902), zu arbeiten. Dort wurde er 1888 promoviert. Im Anschluss arbeitete er als Dozent am Owens College. Ab 1897 war er am neu gegrün‐ deten British Jenner Institute of Preventive Medicine tätig. 1907 wurde er dort Leiter der Abteilung Biochemie. Außerdem erhielt er 1912 eine Professur für Biochemie an der University of London. Auch nach seiner Emeritierung im Jahr 1930 blieb Harden wissenschaftlich aktiv. So befasste er sich unter anderem mit dem Stoffwechsel von E.coli‐Bakterien sowie mit der Gärung. Gemeinsam mit dem deutsch‐schwedischen Wissenschaftler Hans von Euler‐Chelpin gelang es ihm, diesen Vorgang vollständig aufzuklären. Nobelpreis für Chemie 1929 Die Aufklärung der Gärung als eine der ältesten biologischen Technologien der Menschheit hatte bereits zuvor viele Wissenschaftler zu Forschungsarbeiten angeregt, unter ihnen Louis Pasteur und Justus Freiherr von Liebig. Arthur Harden wurde für seine Forschungen über die Gärung von Zucker und die daran beteiligten Gärungsenzyme im Jahr 1929 gemeinsam mit Hans von Euler‐Chelpin mit dem Nobelpreis für Chemie ausgezeichnet. -
A Nobel Synthesis
MILESTONES IN CHEMISTRY Ian Grayson A nobel synthesis IAN GRAYSON Evonik Degussa GmbH, Rodenbacher Chaussee 4, Hanau-Wolfgang, 63457, Germany he first Nobel Prize for chemistry was because it is a scientific challenge, as he awarded in 1901 (to Jacobus van’t Hoff). described in his Nobel lecture: “The synthesis T Up to 2010, the chemistry prize has been of brazilin would have no industrial value; awarded 102 times, to 160 laureates, of whom its biological importance is problematical, only four have been women (1). The most but it is worth while to attempt it for the prominent area for awarding the Nobel Prize sufficient reason that we have no idea how for chemistry has been in organic chemistry, in to accomplish the task” (4). which the Nobel committee includes natural Continuing the list of Nobel Laureates in products, synthesis, catalysis, and polymers. organic synthesis we arrive next at R. B. This amounts to 24 of the prizes. Reading the Woodward. Considered by many the greatest achievements of the earlier organic chemists organic chemist of the 20th century, he who were recipients of the prize, we see that devised syntheses of numerous natural they were drawn to synthesis by the structural Alfred Nobel, 1833-1896 products, including lysergic acid, quinine, analysis and characterisation of natural cortisone and strychnine (Figure 1). 6 compounds. In order to prove the structure conclusively, some In collaboration with Albert Eschenmoser, he achieved the synthesis, even if only a partial synthesis, had to be attempted. It is synthesis of vitamin B12, a mammoth task involving nearly 100 impressive to read of some of the structures which were deduced students and post-docs over many years. -
Timeline of Genomics (1901–1950)*
Research Resource Timeline of Genomics (1901{1950)* Year Event and Theoretical Implication/Extension Reference 1901 Hugo de Vries adopts the term MUTATION to de Vries, H. 1901. Die Mutationstheorie. describe sudden, spontaneous, drastic alterations in Veit, Leipzig, Germany. the hereditary material of Oenothera. Thomas Harrison Montgomery studies sper- 1. Montgomery, T.H. 1898. The spermato- matogenesis in various species of Hemiptera and ¯nds genesis in Pentatoma up to the formation that maternal chromosomes only pair with paternal of the spermatid. Zool. Jahrb. 12: 1-88. chromosomes during meiosis. 2. Montgomery, T.H. 1901. A study of the chromosomes of the germ cells of the Metazoa. Trans. Am. Phil. Soc. 20: 154-236. Clarence Ervin McClung postulates that the so- McClung, C.E. 1901. Notes on the acces- called accessory chromosome (now known as the \X" sory chromosome. Anat. Anz. 20: 220- chromosome) is male determining. 226. Hermann Emil Fischer(1902 Nobel Prize Laure- 1. Fischer, E. and Fourneau, E. 1901. UberÄ ate for Chemistry) and Ernest Fourneau report einige Derivate des Glykocolls. Ber. the synthesis of the ¯rst dipeptide, glycylglycine. In Dtsch. Chem. Ges. 34: 2868-2877. 1902 Fischer introduces the term PEPTIDES. 2. Fischer, E. 1907. Syntheses of polypep- tides. XVII. Ber. Dtsch. Chem. Ges. 40: 1754-1767. 1902 Theodor Boveri and Walter Stanborough Sut- 1. Boveri, T. 1902. UberÄ mehrpolige Mi- ton found the chromosome theory of heredity inde- tosen als Mittel zur Analyse des Zellkerns. pendently. Verh. Phys -med. Ges. WÄurzberg NF 35: 67-90. 2. Boveri, T. 1903. UberÄ die Konstitution der chromatischen Kernsubstanz. Verh. Zool. -
Institute News
Institute News The Celebration Begins: IYC 2011 Causes Reactions in Paris, Philadelphia he International Year of Chemistry heritage. For example, Zhigang Shuai, the discussion of the sense and sensibil- T(IYC 2011) is underway, following professor of physical chemistry at ity of smell. its official launch at two world-class Tsinghua Univ., Beijing, spoke about • On Feb. 3, professor and histori- events. the history of chemistry in China up cal recreator James Armstead came to The celebration began Jan. 27–28, to the 17th century. Thomas Tritton, Philadelphia in the character of Percy 2011, at the world headquarters of the president and CEO of CHF, proposed a Julian, the 20th century chemist who United Nations Educational, Scientific, top ten list of the “rock stars of chem- was the subject of the PBS documen- and Cultural Organization (UNESCO) istry” — Marie Curie, John Dalton, tary titled Forgotten Genius. Armstead in Paris, then moved to the U.S. for a Emil Fischer, Antoine Lavoisier, Justus spoke to students at Philadelphia’s week-long North American kick-off Liebig, Dmitri Mendeleev, Linus Paul- African-American Museum and at The at the Chemical Heritage Foundation ing, Joseph Priestley, Friedrich Wöhler, College of Physicians. (CHF) in Philadelphia, PA. AIChE and Robert B. Woodward. • On Feb. 4., “Elemental Matters,” collaborated with CHF, the American On Feb. 1, the CHF hosted more an exhibit of seven contemporary art- Chemical Society (ACS), the American than 200 visitors, including members ists responding to the periodic table of Chemistry Council (ACC), and other of AIChE’s Board of Directors, AIChE elements, opened at the CHF’s Hach organizations on the U.S. -
Taming the Beast
Inorganic Stamp Corner by Daniel Rabinovich Taming the Beast The French chemist Henri Moissan (1852-1907) was awarded the 1906 Nobel Prize in Chemistry for two rather different areas of scientific endeavor, namely the isolation of elemental fluorine and the introduction of the electric furnace in the preparation of metal carbides and other refractory materials. The selection committee of the Royal Swedish Academy of Sciences had a particularly difficult task that year, and Moissan edged out by a single vote (5-4) no one less than Dmitri Mendeleev, of periodic table fame. Unfortunately the renowned Russian chemist, who was considered an eccentric genius but an outsider in the European establishment, never got a chance to be nominated again since he died of influenza on February 2, 1907. As bad luck would have it, Moissan himself died from acute appendicitis only 18 days later, shortly after returning to Paris from his trip to Stockholm. The isolation of fluorine in 1886 was a remarkable achievement given the extreme reactivity of this element. Moissan succeeded by electrolyzing at -25 °C a solution of potassium hydrogen fluoride (KHF2) dissolved in anhydrous hydrogen fluoride, using special platinum– iridium electrodes in a platinum U-shaped vessel capped with fluorite (CaF2) stoppers. Not exactly an experiment undergraduate students conduct today in a laboratory course! In any event, Moissan’s electrolytic cell is depicted on the two French stamps shown herein. Interestingly, the stamp on the left, released in 1986 to commemorate fluorine’s centennial, displays the incorrect (reverse) chemical equation, i.e., hydrogen does react with fluorine to yield hydrogen fluoride, but that is evidently not how the lightest halogen was isolated in the first place! . -
A Tribute to the Memory of Svante Arrhenius (1859-1927)
A TRIBUTE TO THE MEMORY OF SVANTE ArrHENIUS (1859–1927) A SCIENTIst AHEAD OF HIS TIME BY GUstAF A rrHENIUS, K ARIN CALDWELL AND SVANTE WOLD ROYAL SWEDISH ACADEMY OF ENGINEERING SCIENCES (IVA) A TRIBUTE TO THE MEMORY OF SVANTE ARRHENIUS (1859–1927) P RESENTED at THE 2008 A NNUA L MEETING OF THE ROYA L SWEDISH ACA DEM Y OF ENGINEERING SCIENCES BY GUSta F A RRHENIUS, K A RIN CA LDWELL A ND SVA NTE WOLD The Royal Swedish Academy of Engineering Sciences (IVA) is an independent, learned society that promotes the engineering and economic sciences and the development of industry for the benefit of Swedish society. In cooperation with the business and academic communities, the Academy initiates and proposes measures designed to strengthen Sweden’s industrial skills base and competitiveness. For further information, please visit IVA’s website at www.iva.se. Published by the Royal Swedish Academy of Engineering Sciences (IVA) and Gustaf Arrhenius, Scripps Institution of Oceanography, University of California, San Diego, Karin Caldwell, Surface Biotechnology, Uppsala University and Svante Wold, Umetrics AB and Institute of Chemistry, Umeå University. Cover picture: photography of original painting by Richard Bergh, 1910. Photos and illustrations provided by the authors and by courtesy of the archives at the Royal Swedish Academy of Sciences. The authors would like to express their gratitude to professor Henning Rodhe at Stockholm University for his comments and contributions on selected text. IVA, P.O. Box 5073, SE-102 42 Stockholm, Sweden Phone: +46 8 791 29 00 Fax: +46 8 611 56 23 E-mail: [email protected] Website: www.iva.se IVA-M 395 • ISSN 1102-8254 • ISBN 978-91-7082-779-2 Editor: Eva Stattin, IVA Layout and production: Hans Melcherson, Tryckfaktorn AB, Stockholm, Sweden Printed by OH-Tryck, Stockholm, Sweden, 2008 FOREWORD Every year, the Royal Academy of Engineering Sciences (IVA) produces a booklet com- memorating a person whose scientific, engineering, economic or industrial achieve- ments were of significant benefit to the society of his or her day. -
Hermann Emil Fischer: Life and Achievements
GENERAL ARTICLE Hermann Emil Fischer: Life and Achievements G Nagendrappa Emil Fischer, considered as one of the greatest chemists of all times, carried out much of the fundamental work on purines, sugars, proteins, stereochemistry and several other areas of chemistry during the late nineteenth and early twentieth century. Because most of these are biological molecules, he is known as the ‘Father of Biochemistry’. His achievements in G Nagendrappa was a Professor of Organic chemical synthesis and analytical skills were much ahead of Chemistry at Bangalore his times. He was the second to get the Nobel Prize in Chem- University, and Head of istry in 1902. the Department of Medicinal Chemistry, Sri Introduction Ramachandra (Medical) University, Chennai. He is Carbohydrates, proteins, fats, and nucleic acids are the four major currently in Jain Univer- sity, Bangalore. He chemical constituents of living organisms. These four classes of continues to teach and do organic compounds are the main players in the emergence and research. His work is in existence of life. Extensive pioneering contributions to the devel- the area of organosilicon opment of all these areas of organic chemistry and biochemistry chemistry, synthetic and mechanistic organic were made by Emil Fischer through his more than four decades of chemistry, and clay- brilliant research work starting from the early 1870s. His uncanny catalysed organic reactions skills in analytical and synthetic work, his extraordinary under- (Green Chemistry). standing of the enormous amount of experimental results and their correct interpretation laid a solid foundation for the chemis- try of these biologically important molecules. Though his work essentially constituted analytical and synthetic organic chemis- try, its reach extended to other areas, particularly stereochemis- try, biochemistry, physiology and medicine. -
Book Review Robert Burns Woodward: Architect and Artist in the World of Molecules by Otto Theodor Benfey and Peter J
Book Review Robert Burns Woodward: Architect and Artist in the World of Molecules by Otto Theodor Benfey and Peter J. T. Morris, Eds. (Chemical Heritage Foundation, 2001) 470 pp., ISBN: 0941901254; $45.00 (hard cover) Reviewed by Bernard Miller, Department of Chemistry, University of Massachusetts, Amherst The structure known, but not yet accessible by synthesis, is to the chemist what the unclimbed mountain, the uncharted sea, the untilled field, the unreached planet, are to other men ... The unique challenge which chemical synthesis provides for the creative imagination and the skilled hand ensures that it will endure as long as men write books, paint pictures, and fashion things which are beautiful, or practical, or both. Robert Burns Woodward* It is fitting that this stirring description of the beauty of organic synthesis should come from the pen of the greatest practitioner of the art in our time - perhaps the greatest (in competition with Emil Fischer and Sir Robert Robinson) of all time. Certainly, Robert Burns Woodward was known not only for the remarkable work carried out in his laboratory, but for the clarity, precision, and elegance of his reports of that work. His lectures, frequently featuring complex structures drawn by hand in chalk of many colors, put the usual lecturer’s parade of slides to shame. (Indeed, Woodward seemed to resist the use of mechanical presentation aids as long as possible. As the last of the chalk-talkers, I rely on his example to support my own contention that the human mind works at the same rate as a piece of chalk on a blackboard.) Several of Woodward’s lectures are included in this Festschrift, including his lectures accepting the Nobel prize and the Cope medal, as well as a transcript of his lecture, presented in Sheffield, England, on the Woodward-Hoffmann rules. -
Fluorine Gas F Is the Most Powerful Oxidizing Agent Known, Reacting
Fluorine gas F2 is the most powerful oxidizing agent known, reacting with practically all organic and inorganic substances. Except compounds formed already by its reaction Fluorine ignites on contact with ammonia, phosphorus, silicon, sulfur, copper wire, acetone etc and many organic and inorganic compounds. It reacts with most compounds and often, violently. Fluorine gas is corrosive to exposed tissues and to the upper and lower respiratory tract. It can penetrate deeply into body tissues and will continue to exert tissue damaging effects unless neutralized. Fluorine reacts violently and decomposes to hydrofluoric acid on contact with moisture. The name fluorine was coined by the French chemist amperé as ‘le fluor’ after its ore fluorspar. •Since F2 reacts with almost all the elements except a few rare gases, storage and transport of F2 gas was also a challenge. •Teflon is the preferred gasket material when working with fluorine gas. •Equipments have to be kept dry as F2 oxidizes water giving a mixture of O2, O3 and HF. •The reaction between metals and fluorine is relatively slow at room temperature, but becomes vigorous and self-sustaining at elevated temperatures. •Fluorine can be stored in steel cylinders that have passivated interiors, or nickel or Monel metal cylinders at temperatures below 200 °C (392 °F). •Frequent passivation, along with the strict exclusion of water and greases, must be undertaken. •In the laboratory, glassware may carry fluorine gas under low pressure and anhydrous conditions Attempts to isolate fluorine gas (F2) was one of the toughest tasks handled by chemists. Scientists who were maimed and mauled to death by the tiger of chemistry F2 Humphrey Davy of England: poisoned, recovered.