A New Infrafamilial Taxonomic Setting for Liliaceae, with a Key to Genera and Tribes
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Guide to the Flora of the Carolinas, Virginia, and Georgia, Working Draft of 17 March 2004 -- LILIACEAE
Guide to the Flora of the Carolinas, Virginia, and Georgia, Working Draft of 17 March 2004 -- LILIACEAE LILIACEAE de Jussieu 1789 (Lily Family) (also see AGAVACEAE, ALLIACEAE, ALSTROEMERIACEAE, AMARYLLIDACEAE, ASPARAGACEAE, COLCHICACEAE, HEMEROCALLIDACEAE, HOSTACEAE, HYACINTHACEAE, HYPOXIDACEAE, MELANTHIACEAE, NARTHECIACEAE, RUSCACEAE, SMILACACEAE, THEMIDACEAE, TOFIELDIACEAE) As here interpreted narrowly, the Liliaceae constitutes about 11 genera and 550 species, of the Northern Hemisphere. There has been much recent investigation and re-interpretation of evidence regarding the upper-level taxonomy of the Liliales, with strong suggestions that the broad Liliaceae recognized by Cronquist (1981) is artificial and polyphyletic. Cronquist (1993) himself concurs, at least to a degree: "we still await a comprehensive reorganization of the lilies into several families more comparable to other recognized families of angiosperms." Dahlgren & Clifford (1982) and Dahlgren, Clifford, & Yeo (1985) synthesized an early phase in the modern revolution of monocot taxonomy. Since then, additional research, especially molecular (Duvall et al. 1993, Chase et al. 1993, Bogler & Simpson 1995, and many others), has strongly validated the general lines (and many details) of Dahlgren's arrangement. The most recent synthesis (Kubitzki 1998a) is followed as the basis for familial and generic taxonomy of the lilies and their relatives (see summary below). References: Angiosperm Phylogeny Group (1998, 2003); Tamura in Kubitzki (1998a). Our “liliaceous” genera (members of orders placed in the Lilianae) are therefore divided as shown below, largely following Kubitzki (1998a) and some more recent molecular analyses. ALISMATALES TOFIELDIACEAE: Pleea, Tofieldia. LILIALES ALSTROEMERIACEAE: Alstroemeria COLCHICACEAE: Colchicum, Uvularia. LILIACEAE: Clintonia, Erythronium, Lilium, Medeola, Prosartes, Streptopus, Tricyrtis, Tulipa. MELANTHIACEAE: Amianthium, Anticlea, Chamaelirium, Helonias, Melanthium, Schoenocaulon, Stenanthium, Veratrum, Toxicoscordion, Trillium, Xerophyllum, Zigadenus. -
Alphabetical Lists of the Vascular Plant Families with Their Phylogenetic
Colligo 2 (1) : 3-10 BOTANIQUE Alphabetical lists of the vascular plant families with their phylogenetic classification numbers Listes alphabétiques des familles de plantes vasculaires avec leurs numéros de classement phylogénétique FRÉDÉRIC DANET* *Mairie de Lyon, Espaces verts, Jardin botanique, Herbier, 69205 Lyon cedex 01, France - [email protected] Citation : Danet F., 2019. Alphabetical lists of the vascular plant families with their phylogenetic classification numbers. Colligo, 2(1) : 3- 10. https://perma.cc/2WFD-A2A7 KEY-WORDS Angiosperms family arrangement Summary: This paper provides, for herbarium cura- Gymnosperms Classification tors, the alphabetical lists of the recognized families Pteridophytes APG system in pteridophytes, gymnosperms and angiosperms Ferns PPG system with their phylogenetic classification numbers. Lycophytes phylogeny Herbarium MOTS-CLÉS Angiospermes rangement des familles Résumé : Cet article produit, pour les conservateurs Gymnospermes Classification d’herbier, les listes alphabétiques des familles recon- Ptéridophytes système APG nues pour les ptéridophytes, les gymnospermes et Fougères système PPG les angiospermes avec leurs numéros de classement Lycophytes phylogénie phylogénétique. Herbier Introduction These alphabetical lists have been established for the systems of A.-L de Jussieu, A.-P. de Can- The organization of herbarium collections con- dolle, Bentham & Hooker, etc. that are still used sists in arranging the specimens logically to in the management of historical herbaria find and reclassify them easily in the appro- whose original classification is voluntarily pre- priate storage units. In the vascular plant col- served. lections, commonly used methods are systema- Recent classification systems based on molecu- tic classification, alphabetical classification, or lar phylogenies have developed, and herbaria combinations of both. -
Tracing History
Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 911 Tracing History Phylogenetic, Taxonomic, and Biogeographic Research in the Colchicum Family BY ANNIKA VINNERSTEN ACTA UNIVERSITATIS UPSALIENSIS UPPSALA 2003 Dissertation presented at Uppsala University to be publicly examined in Lindahlsalen, EBC, Uppsala, Friday, December 12, 2003 at 10:00 for the degree of Doctor of Philosophy. The examination will be conducted in English. Abstract Vinnersten, A. 2003. Tracing History. Phylogenetic, Taxonomic and Biogeographic Research in the Colchicum Family. Acta Universitatis Upsaliensis. Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 911. 33 pp. Uppsala. ISBN 91-554-5814-9 This thesis concerns the history and the intrafamilial delimitations of the plant family Colchicaceae. A phylogeny of 73 taxa representing all genera of Colchicaceae, except the monotypic Kuntheria, is presented. The molecular analysis based on three plastid regions—the rps16 intron, the atpB- rbcL intergenic spacer, and the trnL-F region—reveal the intrafamilial classification to be in need of revision. The two tribes Iphigenieae and Uvularieae are demonstrated to be paraphyletic. The well-known genus Colchicum is shown to be nested within Androcymbium, Onixotis constitutes a grade between Neodregea and Wurmbea, and Gloriosa is intermixed with species of Littonia. Two new tribes are described, Burchardieae and Tripladenieae, and the two tribes Colchiceae and Uvularieae are emended, leaving four tribes in the family. At generic level new combinations are made in Wurmbea and Gloriosa in order to render them monophyletic. The genus Androcymbium is paraphyletic in relation to Colchicum and the latter genus is therefore expanded. -
Complete Chloroplast Genomes Shed Light on Phylogenetic
www.nature.com/scientificreports OPEN Complete chloroplast genomes shed light on phylogenetic relationships, divergence time, and biogeography of Allioideae (Amaryllidaceae) Ju Namgung1,4, Hoang Dang Khoa Do1,2,4, Changkyun Kim1, Hyeok Jae Choi3 & Joo‑Hwan Kim1* Allioideae includes economically important bulb crops such as garlic, onion, leeks, and some ornamental plants in Amaryllidaceae. Here, we reported the complete chloroplast genome (cpDNA) sequences of 17 species of Allioideae, fve of Amaryllidoideae, and one of Agapanthoideae. These cpDNA sequences represent 80 protein‑coding, 30 tRNA, and four rRNA genes, and range from 151,808 to 159,998 bp in length. Loss and pseudogenization of multiple genes (i.e., rps2, infA, and rpl22) appear to have occurred multiple times during the evolution of Alloideae. Additionally, eight mutation hotspots, including rps15-ycf1, rps16-trnQ-UUG, petG-trnW-CCA , psbA upstream, rpl32- trnL-UAG , ycf1, rpl22, matK, and ndhF, were identifed in the studied Allium species. Additionally, we present the frst phylogenomic analysis among the four tribes of Allioideae based on 74 cpDNA coding regions of 21 species of Allioideae, fve species of Amaryllidoideae, one species of Agapanthoideae, and fve species representing selected members of Asparagales. Our molecular phylogenomic results strongly support the monophyly of Allioideae, which is sister to Amaryllioideae. Within Allioideae, Tulbaghieae was sister to Gilliesieae‑Leucocoryneae whereas Allieae was sister to the clade of Tulbaghieae‑ Gilliesieae‑Leucocoryneae. Molecular dating analyses revealed the crown age of Allioideae in the Eocene (40.1 mya) followed by diferentiation of Allieae in the early Miocene (21.3 mya). The split of Gilliesieae from Leucocoryneae was estimated at 16.5 mya. -
Nordic Journal of Botany NJB-02477 She, R., Zhao, P
Nordic Journal of Botany NJB-02477 She, R., Zhao, P. , Zhou, H., Yue, M., Yan, F., Hu, G., Gao, X. and Zhang, S. 2020. Complete chloroplast genomes of Liliaceae (s.l.) species: comparative genomic and phylogenetic analyses. - Nordic Journal of Botany 2019: e02477 Appendix 1 Table A1. List of taxa sampled in this study and species accessions numbers (GenBank). Genus Species Accession number Genus Species Accession number Aletris fauriei KT898912 Polygonatum sibiricum KT695605 Aletris Polygonatum Aletris spicata KT898911 Polygonatum verticillatum KT722981 Allium cepa KM088013 Lilium amabile KY940845 Allium obliquum MG670111 Lilium bakerianum KY748301 Allium Allium prattii MG739457 Lilium brownii KY748296 Allium victorialis MF687749 Lilium bulbiferum MG574829 Amana anhuiensis KY401423 Lilium callosum KY940846 Amana edulis KY401425 Lilium cernuum KX354692 Amana Amana erythronioides KY401424 Lilium distichum KT376489 Amana kuocangshanica KY401426 Lilium duchartrei KY748300 Amana wanzhensis KY401422 Lilium fargesii KX592156 Fritillaria cirrhosa KF769143 Lilium hansonii KM103364 Lilium Fritillaria eduardii MF947708 Lilium henryi KY748302 Fritillaria hupehensis KF712486 Lilium lancifolium KY748297 Fritillaria meleagroides MF947710 Lilium leucanthum KY748299 Fritillaria persica MF947709 Lilium longiflorum KC968977 Fritillaria Fritillaria thunbergii KY646165 Lilium philadelphicum KY940847 Fritillaria unibracteata var. KF769142 Lilium primulinum var. ochraceum KY748298 wabuensis Fritillaria ussuriensis KY646166 Lilium taliense KY009938 Fritillaria -
Gondwanan Origin of Major Monocot Groups Inferred from Dispersal-Vicariance Analysis Kåre Bremer Uppsala University
Aliso: A Journal of Systematic and Evolutionary Botany Volume 22 | Issue 1 Article 3 2006 Gondwanan Origin of Major Monocot Groups Inferred from Dispersal-Vicariance Analysis Kåre Bremer Uppsala University Thomas Janssen Muséum National d'Histoire Naturelle Follow this and additional works at: http://scholarship.claremont.edu/aliso Part of the Botany Commons Recommended Citation Bremer, Kåre and Janssen, Thomas (2006) "Gondwanan Origin of Major Monocot Groups Inferred from Dispersal-Vicariance Analysis," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 22: Iss. 1, Article 3. Available at: http://scholarship.claremont.edu/aliso/vol22/iss1/3 Aliso 22, pp. 22-27 © 2006, Rancho Santa Ana Botanic Garden GONDWANAN ORIGIN OF MAJOR MONO COT GROUPS INFERRED FROM DISPERSAL-VICARIANCE ANALYSIS KARE BREMERl.3 AND THOMAS JANSSEN2 lDepartment of Systematic Botany, Evolutionary Biology Centre, Norbyvagen l8D, SE-752 36 Uppsala, Sweden; 2Museum National d'Histoire Naturelle, Departement de Systematique et Evolution, USM 0602: Taxonomie et collections, 16 rue Buffon, 75005 Paris, France 3Corresponding author ([email protected]) ABSTRACT Historical biogeography of major monocot groups was investigated by biogeographical analysis of a dated phylogeny including 79 of the 81 monocot families using the Angiosperm Phylogeny Group II (APG II) classification. Five major areas were used to describe the family distributions: Eurasia, North America, South America, Africa including Madagascar, and Australasia including New Guinea, New Caledonia, and New Zealand. In order to investigate the possible correspondence with continental breakup, the tree with its terminal distributions was fitted to the geological area cladogram «Eurasia, North America), (Africa, (South America, Australasia») and to alternative area cladograms using the TreeFitter program. -
N at U R O P
N AT UROPA " BULLETIN OF THE EUROPEAN INFORMATION CENTRE FOR NATURE CONSERVATION COUNCIL OF EUROPE NATUROPA Number 22 eu ro p ean “Naturopa” is the new title of the bulletin formerly entitled "Naturope" (French version) and "Nature in Focus" (English version). information EDITORIAL G. G. Aym onin 1 cen tre THE MEDITERRANEAN FLORA for MUST BE SAVED J. M elato-Beliz 3 nature PLANT SPECIES CONSERVATION IN THE ALPS - conservation POSSIBILITIES AND PROBLEMS h . Riedl 6 THREATENED AND PROTECTED PLANTS IN THE NETHERLANDS J. Mennem a 10 G. G. AYMONIN THE HEILIGENHAFEN CONFERENCE ON THE Deputy Director of the Laboratory INTERNATIONAL CONSERVATION of Phanerogamy National Museum of Natural History OF WETLANDS AND WILDFOWL G. V. T. M atthews 16 Paris ENVIRONMENTAL CONSERVATION PROBLEMS IN MALTA L. J. Saliba 20 An international meeting of experts attempting to penetrate by analysing Norway across Siberia. Still in its specialising in problems associated what they term the “ecosystems”. natural state, often very dense and ECOLOGY IN A NEW BRITISH CITY J. G. Kelcey 23 with the impoverishment in plant spe Europe’s natural environments are practically impenetrable in places, it 26 cies of numerous natural environments characterized by a great diversity in is a magnificent forest of immense News from Strasbourg in Europe took place at Arc-et-Senans, their biological and aesthetic features. biological and economic value. Notes 28 France, in November 1973, under the From one end of the continent to the To the west of Norway and south of patronage of the Secretary General other the contrasts are striking. Most Sweden begin the forests of Central of the Council of Europe. -
Embryological and Cytological Features of Gagea Bohemica (Liliaceae)
Turk J Bot 36 (2012) 462-472 © TÜBİTAK Research Article doi:10.3906/bot-1107-11 Embryological and cytological features of Gagea bohemica (Liliaceae) Filiz VARDAR*, Işıl İSMAİLOĞLU, Meral ÜNAL Department of Biology, Science and Arts Faculty, Marmara University, 34722 Göztepe, İstanbul - TURKEY Received: 19.07.2011 ● Accepted: 29.02.2012 Abstract: Th e present study describes the developmental features of the embryo sac and ovular structures, particularly the obturator, during development in Gagea bohemica (Zauschn.) Schult. & Schult. f. Th e nucellar epidermis is poorly developed and composed of 1-2 layers of cuboidal cells. Th e tissue at the chalazal end of the nucellus diff erentiates into a hypostase. Th e micropyle is formed by the inner integument and composed of 4-5 cell layers that include starch grains. Th e functional megaspore results in an 8-nucleated embryo sac and conforms to a tetrasporic, Fritillaria L. type. Cytoplasmic nucleoloids consisting of protein and RNA are obvious during megasporogenesis. Th e obturator attracts attention during embryo sac development. Cytochemical tests indicated that the cells of the obturator present a strong reaction in terms of insoluble polysaccharide, lipid, and protein. Obturator cells are coated by a smooth and thick surface layer that starts to accumulate partially and then merges. Ultrastructural studies reveal that obturator cells are rich in rough endoplasmic reticulum, polysomes, plastids with osmiophilic inclusions, dictyosomes with large vesicles, mitochondria, and osmiophilic secretory granules. Aft er fertilisation, the vacuolisation in obturator cells increases by fusing small vacuoles to form larger ones. Some of the small vacuoles contain electron dense deposits. -
Evolutionary History of Floral Key Innovations in Angiosperms Elisabeth Reyes
Evolutionary history of floral key innovations in angiosperms Elisabeth Reyes To cite this version: Elisabeth Reyes. Evolutionary history of floral key innovations in angiosperms. Botanics. Université Paris Saclay (COmUE), 2016. English. NNT : 2016SACLS489. tel-01443353 HAL Id: tel-01443353 https://tel.archives-ouvertes.fr/tel-01443353 Submitted on 23 Jan 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. NNT : 2016SACLS489 THESE DE DOCTORAT DE L’UNIVERSITE PARIS-SACLAY, préparée à l’Université Paris-Sud ÉCOLE DOCTORALE N° 567 Sciences du Végétal : du Gène à l’Ecosystème Spécialité de Doctorat : Biologie Par Mme Elisabeth Reyes Evolutionary history of floral key innovations in angiosperms Thèse présentée et soutenue à Orsay, le 13 décembre 2016 : Composition du Jury : M. Ronse de Craene, Louis Directeur de recherche aux Jardins Rapporteur Botaniques Royaux d’Édimbourg M. Forest, Félix Directeur de recherche aux Jardins Rapporteur Botaniques Royaux de Kew Mme. Damerval, Catherine Directrice de recherche au Moulon Président du jury M. Lowry, Porter Curateur en chef aux Jardins Examinateur Botaniques du Missouri M. Haevermans, Thomas Maître de conférences au MNHN Examinateur Mme. Nadot, Sophie Professeur à l’Université Paris-Sud Directeur de thèse M. -
GENOME EVOLUTION in MONOCOTS a Dissertation
GENOME EVOLUTION IN MONOCOTS A Dissertation Presented to The Faculty of the Graduate School At the University of Missouri In Partial Fulfillment Of the Requirements for the Degree Doctor of Philosophy By Kate L. Hertweck Dr. J. Chris Pires, Dissertation Advisor JULY 2011 The undersigned, appointed by the dean of the Graduate School, have examined the dissertation entitled GENOME EVOLUTION IN MONOCOTS Presented by Kate L. Hertweck A candidate for the degree of Doctor of Philosophy And hereby certify that, in their opinion, it is worthy of acceptance. Dr. J. Chris Pires Dr. Lori Eggert Dr. Candace Galen Dr. Rose‐Marie Muzika ACKNOWLEDGEMENTS I am indebted to many people for their assistance during the course of my graduate education. I would not have derived such a keen understanding of the learning process without the tutelage of Dr. Sandi Abell. Members of the Pires lab provided prolific support in improving lab techniques, computational analysis, greenhouse maintenance, and writing support. Team Monocot, including Dr. Mike Kinney, Dr. Roxi Steele, and Erica Wheeler were particularly helpful, but other lab members working on Brassicaceae (Dr. Zhiyong Xiong, Dr. Maqsood Rehman, Pat Edger, Tatiana Arias, Dustin Mayfield) all provided vital support as well. I am also grateful for the support of a high school student, Cady Anderson, and an undergraduate, Tori Docktor, for their assistance in laboratory procedures. Many people, scientist and otherwise, helped with field collections: Dr. Travis Columbus, Hester Bell, Doug and Judy McGoon, Julie Ketner, Katy Klymus, and William Alexander. Many thanks to Barb Sonderman for taking care of my greenhouse collection of many odd plants brought back from the field. -
Pollen Morphology of Erythronium L. (Liliaceae) and Its Systematic Relationships
J. Basic. Appl. Sci. Res., 2(2)1833-1838, 2012 ISSN 2090-4304 Journal of Basic and Applied © 2012, TextRoad Publication Scientific Research www.textroad.com Pollen Morphology of Erythronium L. (Liliaceae) and its Systematic Relationships Sayed-Mohammad Masoumi Department of Plant Protection, Razi University, Kermanshah, Iran ABSTRACT Pollen morphology of three genus of Erythronium was studied by the Light Microscopy (LM), Scanning Electron Microscopy (SEM) and Transmission Electron Microscopy (TEM). Sulcus long reaching the ends of the grains, with operculum (E. giganteum, E. sibiricum) or without it (E. caucasicum). With surface latticed ornamentation and large lattice, thickness of muri and size of Lumina in E. sibiricum are widely varied. Also, most palynomorphological characteristics of the data transmission electron microscopy (TEM) showed no strong differences between E. caucasicum and E. sibiricum, , but these species are well distinguished from E. giganteum according to ectexine thickness (thickness of the tectum and the foot layer), shape and diameter of the caput, height and width of the columella. KEY WORDS: Caput; Columella; Exine ornamentation; intine; Microrelief; Pollen grain; Tectum. INTRODUCTION Takhtajan, 1987 indicated that the genus of Erythronium in Tribe Tulipeae is of the Liliaceae family. Different sources have considered the species number of this genus varied from 24-30. Baranova (1999) introduced 24 species for this genus, of which 20 species were spread in North America. Allen et al. (2003) examined the genus of Erythronium, Amana, and Tulipa using the DNA sequences from the chloroplast gene matK and the internal transcribed spacer (ITS) of nuclear ribosomal DNA. Palynomorphological characters of 20 different pollen species of Erythronium were evaluated by different researchers (Ikuse, 1965; Beug (1963); Radulescu, 1973; Nakamura, 1980; Schulze, 1980; Kuprianova, 1983; Takahashi (1987); Kosenko, 1991b, 1992, 1996, 1999; Maassoumi, 2005a, 2005b, 2007). -
Advances in Alstroemeria Biotechnology
Title Advances in Alstroemeria Biotechnology Author(s) Hoshino, Yoichiro Floriculture, Ornamental and Plant Biotechnology : Advances and Topical Issues, Vol. 5. pp.540-547, Chapter 51. Citation ISBN: 978-4-903313-12-2 Issue Date 2008-05 Doc URL http://hdl.handle.net/2115/34118 Type bookchapter File Information FOPB5-51Hoshi08.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP ® 51 Advances in Alstroemeria Biotechnology Yoichiro Hoshino1,2* 1 Field Science Center for Northern Biosphere, Hokkaido University, Kita 11, Nishi 10, Kita-Ku, Sapporo 060-0811, Japan 2 Division of Innovative Research, Creative Research Initiative ‘Sousei’ (CRIS), Hokkaido University, Kita 21, Nishi 10, Kita-Ku, Sapporo 001-0021, Japan Correspondence: * [email protected] Keywords: genetic transformation, interspecific hybridization, tissue culture ABSTRACT The genus Alstroemeria belongs to the family Alstroemeriaceae and comprises many ornamental species. This genus, including more than 60 species, is indigenous to South America. Thus far, numerous cultivars, which are used as cut flowers and potted plants worldwide, have been produced by interspecific hybridization and mutation breeding. Recently, biotechnological approaches are being applied in order to improve Alstroemeria strains. Interspecific hybrid plants have been produced by ovule cultures. By improving certain culture techniques, sexual incompatibility was overcome in some cross combinations using ovule cultures. Plant regeneration systems that involved the use of explants, immature ovules, leaves, etc., through callus cultures have been reported. Isolation of protoplasts and cultures resulting in plant regeneration were achieved by using the embryogenic callus. Particle bombardment and Agrobacterium-mediated procedures were applied for genetic transformation, and some transformed plants with marker genes were produced.